Wall clock time and date at job start Tue Mar 31 2020 21:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47184 * 2 1 4 4 C 1.53006 * 109.46552 * 240.00125 * 2 1 3 5 5 O 1.42900 * 109.47176 * 305.00228 * 4 2 1 6 6 C 1.42900 * 113.99841 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47102 * 179.97438 * 6 5 4 8 8 F 1.39901 * 109.46804 * 59.99691 * 7 6 5 9 9 F 1.39897 * 109.47148 * 179.97438 * 7 6 5 10 10 F 1.39894 * 109.46954 * 300.00049 * 7 6 5 11 11 N 1.46495 * 109.47091 * 120.00328 * 2 1 3 12 12 C 1.34770 * 120.00074 * 274.99548 * 11 2 1 13 13 O 1.21584 * 120.00110 * 355.01205 * 12 11 2 14 14 N 1.34781 * 120.00170 * 175.01451 * 12 11 2 15 15 C 1.46924 * 120.63025 * 184.94480 * 14 12 11 16 16 C 1.52758 * 109.00886 * 233.57900 * 15 14 12 17 17 C 1.53037 * 109.38663 * 305.59100 * 16 15 14 18 18 C 1.50701 * 109.44900 * 181.25016 * 17 16 15 19 19 H 1.07998 * 119.99880 * 239.93857 * 18 17 16 20 20 C 1.37878 * 119.99491 * 59.94030 * 18 17 16 21 21 N 1.31512 * 120.00492 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99319 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47510 * 59.99861 * 22 20 18 24 24 H 1.48506 * 109.46791 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47037 * 299.99544 * 22 20 18 26 26 C 1.53041 * 109.53742 * 61.24018 * 17 16 15 27 27 C 1.46921 * 120.62907 * 5.22329 * 14 12 11 28 28 H 1.09001 * 109.47068 * 59.99115 * 1 2 3 29 29 H 1.08993 * 109.47535 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46685 * 299.99940 * 1 2 3 31 31 H 1.08997 * 109.46956 * 65.00288 * 4 2 1 32 32 H 1.08997 * 109.46638 * 185.00072 * 4 2 1 33 33 H 1.09008 * 109.46732 * 299.99187 * 6 5 4 34 34 H 1.08998 * 109.47268 * 59.99503 * 6 5 4 35 35 H 0.97004 * 120.00083 * 94.99347 * 11 2 1 36 36 H 1.08997 * 109.58983 * 353.41963 * 15 14 12 37 37 H 1.09003 * 109.58645 * 113.84321 * 15 14 12 38 38 H 1.09005 * 109.56540 * 185.55045 * 16 15 14 39 39 H 1.09008 * 109.38084 * 65.52224 * 16 15 14 40 40 H 1.09004 * 109.45846 * 301.21694 * 17 16 15 41 41 H 0.96999 * 120.00099 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.49695 * 178.68421 * 26 17 16 43 43 H 1.09003 * 109.52762 * 58.59756 * 26 17 16 44 44 H 1.09006 * 109.58887 * 246.15741 * 27 14 12 45 45 H 1.09001 * 109.59149 * 6.43991 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 1.4700 -2.0303 -1.3096 6 6 1.8842 -2.7929 -2.4449 7 6 1.2167 -4.1690 -2.4061 8 9 -0.1735 -4.0138 -2.4304 9 9 1.6217 -4.9153 -3.5179 10 9 1.5910 -4.8359 -1.2347 11 7 2.0184 -0.6907 1.1961 12 6 2.1472 -0.0184 2.3570 13 8 1.9454 1.1801 2.3911 14 7 2.4997 -0.6746 3.4803 15 6 2.5392 0.0222 4.7732 16 6 3.9120 -0.1872 5.4095 17 6 4.2098 -1.6860 5.4935 18 6 5.5505 -1.8953 6.1490 19 1 6.3395 -2.4032 5.6144 20 6 5.7696 -1.4384 7.4313 21 7 4.8089 -0.8195 8.0821 22 14 7.4318 -1.6973 8.2435 23 1 8.4855 -1.0281 7.4392 24 1 7.4099 -1.1187 9.6111 25 1 7.7211 -3.1515 8.3265 26 6 4.2324 -2.2831 4.0845 27 6 2.8577 -2.0988 3.4341 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.7516 -0.1583 -2.1370 32 1 3.1262 -0.7995 -1.2057 33 1 1.5928 -2.2730 -3.3576 34 1 2.9673 -2.9141 -2.4257 35 1 2.2490 -1.6319 1.1525 36 1 2.3678 1.0875 4.6195 37 1 1.7694 -0.3828 5.4302 38 1 3.9192 0.2418 6.4115 39 1 4.6719 0.3011 4.7992 40 1 3.4362 -2.1774 6.0837 41 1 4.9631 -0.4984 8.9843 42 1 4.4676 -3.3457 4.1434 43 1 4.9890 -1.7756 3.4859 44 1 2.1144 -2.6803 3.9796 45 1 2.8939 -2.4331 2.3972 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543772696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:28 Heat of formation + Delta-G solvation = -251.868566 kcal Electronic energy + Delta-G solvation = -30450.627341 eV Core-core repulsion = 25666.364885 eV Total energy + Delta-G solvation = -4784.262456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.05222 -48.61208 -48.54154 -41.44344 -39.52836 -38.48913 -36.31125 -35.36445 -33.16397 -32.30083 -31.23230 -30.34199 -27.94609 -27.31250 -24.84180 -24.22141 -23.98320 -22.48866 -21.48128 -20.47078 -19.58605 -19.57359 -19.18755 -18.63275 -18.28951 -17.78081 -17.08100 -16.64419 -16.53473 -16.43376 -15.66527 -15.45542 -15.38655 -15.26002 -14.99420 -14.98579 -14.78251 -14.72033 -14.70588 -14.65459 -14.29984 -14.19677 -13.88269 -13.45289 -13.34768 -13.20249 -12.92742 -12.77315 -12.74752 -12.49485 -12.29084 -12.15809 -11.98971 -11.90590 -11.41736 -11.28992 -10.92936 -10.85264 -10.78084 -10.39271 -10.17967 -9.37375 -8.06061 -6.20224 1.43209 1.43867 1.51219 1.52368 1.73241 2.17025 2.35210 2.44930 2.89876 2.97436 3.06746 3.20380 3.46371 3.81698 4.05912 4.11638 4.18698 4.19983 4.26137 4.34057 4.40089 4.48912 4.52391 4.58643 4.63849 4.74194 4.84918 4.91633 4.98608 5.01736 5.20968 5.24540 5.37045 5.48304 5.51380 5.59698 5.66978 5.84008 5.99531 6.09952 6.14059 6.39722 6.91197 7.03314 7.47830 7.60156 8.97195 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.002563 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.085673 B =10923.130652 C =12177.685154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.157 3.843 3 H 0.094 0.906 4 C 0.064 3.936 5 O -0.390 6.390 6 C 0.021 3.979 7 C 0.455 3.545 8 F -0.188 7.188 9 F -0.179 7.179 10 F -0.189 7.189 11 N -0.730 5.730 12 C 0.703 3.297 13 O -0.637 6.637 14 N -0.623 5.623 15 C 0.139 3.861 16 C -0.111 4.111 17 C 0.046 3.954 18 C -0.533 4.533 19 H 0.053 0.947 20 C 0.013 3.987 21 N -0.916 5.916 22 Si 0.951 3.049 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.270 1.270 26 C -0.115 4.115 27 C 0.119 3.881 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.032 0.968 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.407 0.593 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.021 0.979 40 H 0.002 0.998 41 H 0.260 0.740 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.405 -4.379 -25.845 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.052 3.948 3 H 0.112 0.888 4 C -0.012 4.012 5 O -0.310 6.310 6 C -0.057 4.057 7 C 0.401 3.599 8 F -0.170 7.170 9 F -0.161 7.161 10 F -0.171 7.171 11 N -0.389 5.389 12 C 0.404 3.596 13 O -0.519 6.519 14 N -0.359 5.359 15 C 0.016 3.984 16 C -0.150 4.150 17 C 0.028 3.972 18 C -0.571 4.571 19 H 0.071 0.929 20 C -0.186 4.186 21 N -0.555 5.555 22 Si 0.777 3.223 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.195 1.195 26 C -0.153 4.153 27 C -0.003 4.003 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.144 0.856 34 H 0.137 0.863 35 H 0.245 0.755 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.040 0.960 40 H 0.021 0.979 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.749 -3.555 -25.519 26.906 hybrid contribution 0.981 -0.592 0.986 1.511 sum -6.768 -4.147 -24.534 25.786 Atomic orbital electron populations 1.22047 0.94716 1.02422 1.02003 1.21048 0.94961 0.96573 0.82174 0.88809 1.22990 0.98440 0.82045 0.97769 1.87881 1.70817 1.28054 1.44250 1.23686 1.01555 0.87163 0.93305 1.20630 0.77016 0.89030 0.73216 1.93198 1.31898 1.95814 1.96084 1.93207 1.90382 1.79027 1.53451 1.93208 1.91083 1.83295 1.49470 1.45279 1.71206 1.14268 1.08148 1.16023 0.77799 0.84626 0.81109 1.90827 1.60985 1.14476 1.85658 1.47396 1.70376 1.11492 1.06614 1.21312 0.98067 0.96603 0.82398 1.21701 0.93338 1.00038 0.99932 1.18587 0.95064 0.91756 0.91812 1.21564 0.99289 1.36813 0.99474 0.92874 1.25718 0.99862 0.95010 0.98011 1.69973 1.33757 1.39486 1.12319 0.85729 0.80626 0.78559 0.77419 1.19992 1.21216 1.19523 1.21860 0.95575 1.00866 0.96996 1.21760 0.96804 0.80135 1.01641 0.89516 0.91951 0.94888 0.87693 0.90411 0.85646 0.86290 0.75456 0.91388 0.92406 0.90918 0.96039 0.97938 0.93062 0.90940 0.93465 0.91106 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.29 71.98 0.67 -2.27 16 2 C 0.16 2.98 3.02 45.00 0.14 3.11 16 3 H 0.09 2.03 7.51 -2.39 -0.02 2.01 16 4 C 0.06 0.65 5.68 71.98 0.41 1.06 16 5 O -0.39 -4.82 9.08 -148.98 -1.35 -6.18 16 6 C 0.02 0.15 5.90 71.98 0.42 0.57 16 7 C 0.46 6.06 3.32 71.98 0.24 6.30 16 8 F -0.19 -3.19 17.26 44.97 0.78 -2.42 16 9 F -0.18 -2.37 17.32 44.97 0.78 -1.59 16 10 F -0.19 -3.40 17.26 44.97 0.78 -2.62 16 11 N -0.73 -18.05 4.97 -457.82 -2.27 -20.32 16 12 C 0.70 24.40 8.26 179.06 1.48 25.88 16 13 O -0.64 -26.65 15.39 -3.98 -0.06 -26.71 16 14 N -0.62 -22.41 2.98 -837.75 -2.50 -24.91 16 15 C 0.14 5.80 6.41 86.22 0.55 6.36 16 16 C -0.11 -5.35 5.14 30.53 0.16 -5.20 16 17 C 0.05 2.24 2.07 -11.51 -0.02 2.22 16 18 C -0.53 -28.75 8.56 25.60 0.22 -28.53 16 19 H 0.05 2.80 7.74 -2.91 -0.02 2.77 16 20 C 0.01 0.69 5.30 84.66 0.45 1.14 16 21 N -0.92 -52.41 11.30 21.45 0.24 -52.17 16 22 Si 0.95 43.28 29.54 68.60 2.03 45.31 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 C -0.11 -4.33 5.30 30.67 0.16 -4.17 16 27 C 0.12 3.67 6.39 86.37 0.55 4.22 16 28 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.23 7.56 -2.39 -0.02 1.22 16 30 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.13 0.19 8.14 -2.38 -0.02 0.17 16 34 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.41 8.66 5.87 -92.71 -0.54 8.12 16 36 H 0.07 2.93 6.99 -2.39 -0.02 2.91 16 37 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.07 3.95 6.03 -2.38 -0.01 3.93 16 39 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 42 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 45 H 0.10 2.28 5.64 -2.39 -0.01 2.27 16 Total: -1.00 -69.91 374.41 4.31 -65.60 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.47 Total: 15.31 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 5.42 Total: 10.69 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -4.53 Total: -97.40 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.41 Total: -32.89 kcal Atomic # 9 Polarization: -8.96 SS G_CDS: 2.33 Total: -6.63 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -69.91 4.31 -65.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543772696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.266 kcal (2) G-P(sol) polarization free energy of solvation -69.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -256.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds