Wall clock time and date at job start Tue Mar 31 2020 20:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47192 * 2 1 4 4 C 1.53001 * 109.47269 * 119.99836 * 2 1 3 5 5 C 1.53000 * 109.47236 * 184.99909 * 4 2 1 6 6 C 1.52991 * 109.47466 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47247 * 180.02562 * 6 5 4 8 8 F 1.39900 * 109.47407 * 59.99782 * 7 6 5 9 9 F 1.39906 * 109.46883 * 179.97438 * 7 6 5 10 10 F 1.39899 * 109.46817 * 299.99325 * 7 6 5 11 11 N 1.46503 * 109.47168 * 239.99955 * 2 1 3 12 12 C 1.34784 * 119.99757 * 84.99563 * 11 2 1 13 13 O 1.21581 * 119.99786 * 0.02562 * 12 11 2 14 14 N 1.34777 * 119.99679 * 180.02562 * 12 11 2 15 15 C 1.47025 * 125.64772 * 359.69485 * 14 12 11 16 16 C 1.54338 * 107.26530 * 178.84898 * 15 14 12 17 17 C 1.55160 * 103.01987 * 338.14034 * 16 15 14 18 18 O 1.42897 * 111.00285 * 277.23491 * 17 16 15 19 19 C 1.50691 * 111.03789 * 153.39533 * 17 16 15 20 20 H 1.08000 * 120.00107 * 272.60813 * 19 17 16 21 21 C 1.37875 * 120.00285 * 92.60836 * 19 17 16 22 22 N 1.31519 * 120.00184 * 173.51798 * 21 19 17 23 23 Si 1.86800 * 119.99725 * 353.52226 * 21 19 17 24 24 H 1.48499 * 109.46957 * 87.32058 * 23 21 19 25 25 H 1.48495 * 109.47133 * 207.31876 * 23 21 19 26 26 H 1.48497 * 109.47208 * 327.32333 * 23 21 19 27 27 C 1.47414 * 125.64822 * 180.02562 * 14 12 11 28 28 H 1.08996 * 109.46942 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46811 * 299.99786 * 1 2 3 30 30 H 1.08996 * 109.47118 * 59.99947 * 1 2 3 31 31 H 1.08994 * 109.47065 * 304.99961 * 4 2 1 32 32 H 1.08996 * 109.47100 * 64.99985 * 4 2 1 33 33 H 1.09007 * 109.47040 * 300.00312 * 5 4 2 34 34 H 1.09006 * 109.46881 * 59.99965 * 5 4 2 35 35 H 1.09007 * 109.46975 * 300.00021 * 6 5 4 36 36 H 1.08996 * 109.47256 * 59.99840 * 6 5 4 37 37 H 0.97000 * 120.00112 * 264.99994 * 11 2 1 38 38 H 1.09001 * 109.88148 * 298.39341 * 15 14 12 39 39 H 1.09004 * 109.88288 * 59.55661 * 15 14 12 40 40 H 1.09003 * 110.84932 * 219.67555 * 16 15 14 41 41 H 1.08997 * 110.51656 * 96.44711 * 16 15 14 42 42 H 0.96702 * 114.00059 * 168.39974 * 18 17 16 43 43 H 0.96996 * 119.99660 * 180.02562 * 22 21 19 44 44 H 1.09004 * 110.37114 * 322.93112 * 27 14 12 45 45 H 1.09001 * 110.36903 * 85.14465 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0750 -1.3350 2.5625 7 6 5.5998 -1.2264 2.6272 8 9 5.9694 0.1217 2.6840 9 9 6.0661 -1.8859 3.7696 10 9 6.1579 -1.8155 1.4876 11 7 2.0183 -0.6906 -1.1962 12 6 2.1470 -0.0182 -2.3572 13 8 1.8581 1.1615 -2.4116 14 7 2.5957 -0.6537 -3.4578 15 6 2.9850 -2.0696 -3.5308 16 6 3.4025 -2.3553 -4.9889 17 6 2.6951 -1.2253 -5.7828 18 8 1.3341 -1.5652 -6.0548 19 6 3.4362 -0.9141 -7.0575 20 1 4.2415 -0.1945 -7.0520 21 6 3.0863 -1.5481 -8.2308 22 7 3.6441 -1.1861 -9.3655 23 14 1.8198 -2.9210 -8.2087 24 1 0.4590 -2.3413 -8.3402 25 1 2.0746 -3.8477 -9.3407 26 1 1.9190 -3.6654 -6.9276 27 6 2.7841 -0.0426 -4.7860 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6054 -0.2617 2.1369 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0728 0.4259 34 1 3.8532 0.4371 1.3573 35 1 3.6404 -0.8758 3.4505 36 1 3.7866 -2.3852 2.5185 37 1 2.2490 -1.6318 -1.1526 38 1 3.8227 -2.2588 -2.8594 39 1 2.1392 -2.7011 -3.2587 40 1 3.0455 -3.3339 -5.3100 41 1 4.4847 -2.2835 -5.0975 42 1 0.8037 -0.8285 -6.3881 43 1 3.3975 -1.6319 -10.1909 44 1 1.9945 0.6819 -4.9857 45 1 3.7615 0.4358 -4.8484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592018748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:12 Heat of formation + Delta-G solvation = -247.232239 kcal Electronic energy + Delta-G solvation = -30451.369031 eV Core-core repulsion = 25667.307621 eV Total energy + Delta-G solvation = -4784.061409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.40319 -47.91693 -47.86794 -40.07221 -38.19239 -36.78350 -34.72790 -34.23253 -32.37932 -31.43697 -29.86294 -28.57241 -28.26102 -25.26333 -24.43011 -22.73678 -22.08981 -21.20671 -19.90381 -19.77524 -18.86392 -18.64451 -18.01120 -17.55192 -17.35913 -16.39804 -15.62045 -15.41131 -15.09431 -14.87519 -14.82734 -14.55671 -14.32753 -14.30325 -14.23929 -14.02574 -14.02167 -13.73493 -13.62369 -13.38175 -12.71020 -12.68075 -12.53260 -12.42286 -12.36013 -12.04092 -11.93187 -11.70059 -11.56389 -11.38742 -11.26039 -11.04497 -10.95424 -10.50614 -10.39351 -10.21315 -9.82134 -9.24367 -9.03562 -8.67747 -8.53351 -8.00844 -6.19793 -4.31834 2.43784 2.89346 3.44382 3.44945 3.50889 3.51407 3.62536 3.67987 3.69504 4.21220 4.33480 4.45611 4.48955 4.62031 4.82776 4.90664 4.95297 5.01518 5.13265 5.23898 5.31590 5.35005 5.36388 5.53118 5.56205 5.60470 5.72643 5.77261 5.83717 5.94435 6.08454 6.13586 6.48602 6.53192 6.63645 6.65696 6.71765 7.04650 7.32759 7.47971 8.11893 8.28068 8.61589 8.81215 8.89374 9.41644 10.89110 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.002662 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.411893 B =10516.651226 C =11416.851272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.161 3.839 3 H 0.089 0.911 4 C -0.122 4.122 5 C -0.127 4.127 6 C -0.165 4.165 7 C 0.449 3.551 8 F -0.184 7.184 9 F -0.188 7.188 10 F -0.182 7.182 11 N -0.745 5.745 12 C 0.720 3.280 13 O -0.598 6.598 14 N -0.628 5.628 15 C 0.102 3.898 16 C -0.120 4.120 17 C 0.220 3.780 18 O -0.559 6.559 19 C -0.552 4.552 20 H 0.081 0.919 21 C 0.074 3.926 22 N -0.888 5.888 23 Si 0.952 3.048 24 H -0.293 1.293 25 H -0.327 1.327 26 H -0.270 1.270 27 C 0.108 3.892 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.393 0.607 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.371 0.629 43 H 0.267 0.733 44 H 0.069 0.931 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.920 -2.915 25.909 26.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.055 3.945 3 H 0.107 0.893 4 C -0.160 4.160 5 C -0.165 4.165 6 C -0.203 4.203 7 C 0.396 3.604 8 F -0.165 7.165 9 F -0.170 7.170 10 F -0.163 7.163 11 N -0.401 5.401 12 C 0.422 3.578 13 O -0.477 6.477 14 N -0.365 5.365 15 C -0.022 4.022 16 C -0.158 4.158 17 C 0.179 3.821 18 O -0.367 6.367 19 C -0.589 4.589 20 H 0.099 0.901 21 C -0.131 4.131 22 N -0.523 5.523 23 Si 0.788 3.212 24 H -0.221 1.221 25 H -0.258 1.258 26 H -0.196 1.196 27 C -0.014 4.014 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.227 0.773 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.219 0.781 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.881 -2.571 25.959 26.154 hybrid contribution -0.332 -0.655 -0.224 0.768 sum -2.213 -3.226 25.735 26.031 Atomic orbital electron populations 1.22198 0.95437 1.02002 1.02600 1.20733 0.93765 0.97352 0.82628 0.89302 1.21852 0.94243 1.01735 0.98167 1.21646 0.96810 1.01804 0.96209 1.22921 0.87956 1.06018 1.03412 1.20673 0.92789 0.73590 0.73396 1.93194 1.93376 1.33892 1.96065 1.93188 1.90926 1.81224 1.51625 1.93208 1.87785 1.84079 1.51269 1.45220 1.72518 1.13490 1.08918 1.15468 0.78270 0.84507 0.79590 1.90884 1.58124 1.14374 1.84319 1.47714 1.67789 1.11316 1.09677 1.22043 0.98296 0.82137 0.99679 1.22948 1.01183 1.00813 0.90862 1.20248 0.79840 0.89215 0.92790 1.86104 1.23864 1.40514 1.86212 1.21107 1.19916 1.27116 0.90787 0.90055 1.25119 0.96261 0.96890 0.94817 1.69971 1.42854 1.40887 0.98562 0.85630 0.79956 0.80488 0.75140 1.22098 1.25843 1.19613 1.22981 1.01343 0.97497 0.79609 0.92646 0.91913 0.91693 0.89891 0.90935 0.90163 0.90198 0.87270 0.87243 0.77307 0.92785 0.92553 0.90223 0.89641 0.78078 0.92399 0.91262 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.48 37.16 0.35 -1.21 16 2 C 0.16 1.57 2.57 -67.93 -0.17 1.40 16 3 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 4 C -0.12 -0.72 4.75 -26.73 -0.13 -0.85 16 5 C -0.13 -0.84 4.86 -26.74 -0.13 -0.97 16 6 C -0.16 -0.83 5.26 -26.73 -0.14 -0.97 16 7 C 0.45 3.58 3.16 37.16 0.12 3.70 16 8 F -0.18 -1.73 16.80 2.25 0.04 -1.70 16 9 F -0.19 -1.61 17.32 2.25 0.04 -1.57 16 10 F -0.18 -1.78 16.80 2.25 0.04 -1.74 16 11 N -0.74 -9.01 4.49 -58.67 -0.26 -9.28 16 12 C 0.72 12.33 8.45 -86.91 -0.73 11.59 16 13 O -0.60 -12.38 16.26 5.29 0.09 -12.30 16 14 N -0.63 -11.05 3.33 -176.21 -0.59 -11.64 16 15 C 0.10 1.57 6.15 -3.06 -0.02 1.55 16 16 C -0.12 -2.26 5.90 -24.89 -0.15 -2.40 16 17 C 0.22 4.74 0.70 -89.61 -0.06 4.67 16 18 O -0.56 -11.97 8.52 -35.23 -0.30 -12.27 16 19 C -0.55 -14.38 8.89 -34.45 -0.31 -14.69 16 20 H 0.08 2.31 8.00 -52.49 -0.42 1.89 16 21 C 0.07 2.03 5.46 -17.82 -0.10 1.94 16 22 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 23 Si 0.95 23.05 24.93 -169.99 -4.24 18.81 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.33 -8.15 7.11 56.52 0.40 -7.75 16 26 H -0.27 -6.35 5.42 56.52 0.31 -6.04 16 27 C 0.11 2.18 6.07 -2.52 -0.02 2.17 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.65 7.41 -51.93 -0.38 0.26 16 34 H 0.08 0.61 7.80 -51.93 -0.41 0.20 16 35 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.39 3.96 7.59 -40.82 -0.31 3.65 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.54 6.65 -51.93 -0.35 1.19 16 41 H 0.09 1.59 8.03 -51.93 -0.42 1.17 16 42 H 0.37 7.19 8.99 45.56 0.41 7.60 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.07 1.44 8.02 -51.93 -0.42 1.02 16 45 H 0.07 1.43 7.99 -51.93 -0.41 1.02 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -32.80 373.38 -6.40 -39.21 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.13 Total: 6.23 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -1.48 Total: 5.93 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.08 Total: -46.24 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.21 Total: -24.56 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.11 Total: -5.01 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.24 Total: 18.81 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.80 -6.40 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592018748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.026 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds