Wall clock time and date at job start Tue Mar 31 2020 20:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47192 * 2 1 4 4 C 1.53001 * 109.47269 * 119.99836 * 2 1 3 5 5 C 1.53000 * 109.47236 * 184.99909 * 4 2 1 6 6 C 1.52991 * 109.47466 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47247 * 180.02562 * 6 5 4 8 8 F 1.39900 * 109.47407 * 59.99782 * 7 6 5 9 9 F 1.39906 * 109.46883 * 179.97438 * 7 6 5 10 10 F 1.39899 * 109.46817 * 299.99325 * 7 6 5 11 11 N 1.46503 * 109.47168 * 239.99955 * 2 1 3 12 12 C 1.34784 * 119.99757 * 84.99563 * 11 2 1 13 13 O 1.21581 * 119.99786 * 0.02562 * 12 11 2 14 14 N 1.34777 * 119.99679 * 180.02562 * 12 11 2 15 15 C 1.47025 * 125.64772 * 359.69485 * 14 12 11 16 16 C 1.54338 * 107.26530 * 178.84898 * 15 14 12 17 17 C 1.55160 * 103.01987 * 338.14034 * 16 15 14 18 18 O 1.42897 * 111.00285 * 277.23491 * 17 16 15 19 19 C 1.50691 * 111.03789 * 153.39533 * 17 16 15 20 20 H 1.08000 * 120.00107 * 272.60813 * 19 17 16 21 21 C 1.37875 * 120.00285 * 92.60836 * 19 17 16 22 22 N 1.31519 * 120.00184 * 173.51798 * 21 19 17 23 23 Si 1.86800 * 119.99725 * 353.52226 * 21 19 17 24 24 H 1.48499 * 109.46957 * 87.32058 * 23 21 19 25 25 H 1.48495 * 109.47133 * 207.31876 * 23 21 19 26 26 H 1.48497 * 109.47208 * 327.32333 * 23 21 19 27 27 C 1.47414 * 125.64822 * 180.02562 * 14 12 11 28 28 H 1.08996 * 109.46942 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46811 * 299.99786 * 1 2 3 30 30 H 1.08996 * 109.47118 * 59.99947 * 1 2 3 31 31 H 1.08994 * 109.47065 * 304.99961 * 4 2 1 32 32 H 1.08996 * 109.47100 * 64.99985 * 4 2 1 33 33 H 1.09007 * 109.47040 * 300.00312 * 5 4 2 34 34 H 1.09006 * 109.46881 * 59.99965 * 5 4 2 35 35 H 1.09007 * 109.46975 * 300.00021 * 6 5 4 36 36 H 1.08996 * 109.47256 * 59.99840 * 6 5 4 37 37 H 0.97000 * 120.00112 * 264.99994 * 11 2 1 38 38 H 1.09001 * 109.88148 * 298.39341 * 15 14 12 39 39 H 1.09004 * 109.88288 * 59.55661 * 15 14 12 40 40 H 1.09003 * 110.84932 * 219.67555 * 16 15 14 41 41 H 1.08997 * 110.51656 * 96.44711 * 16 15 14 42 42 H 0.96702 * 114.00059 * 168.39974 * 18 17 16 43 43 H 0.96996 * 119.99660 * 180.02562 * 22 21 19 44 44 H 1.09004 * 110.37114 * 322.93112 * 27 14 12 45 45 H 1.09001 * 110.36903 * 85.14465 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0750 -1.3350 2.5625 7 6 5.5998 -1.2264 2.6272 8 9 5.9694 0.1217 2.6840 9 9 6.0661 -1.8859 3.7696 10 9 6.1579 -1.8155 1.4876 11 7 2.0183 -0.6906 -1.1962 12 6 2.1470 -0.0182 -2.3572 13 8 1.8581 1.1615 -2.4116 14 7 2.5957 -0.6537 -3.4578 15 6 2.9850 -2.0696 -3.5308 16 6 3.4025 -2.3553 -4.9889 17 6 2.6951 -1.2253 -5.7828 18 8 1.3341 -1.5652 -6.0548 19 6 3.4362 -0.9141 -7.0575 20 1 4.2415 -0.1945 -7.0520 21 6 3.0863 -1.5481 -8.2308 22 7 3.6441 -1.1861 -9.3655 23 14 1.8198 -2.9210 -8.2087 24 1 0.4590 -2.3413 -8.3402 25 1 2.0746 -3.8477 -9.3407 26 1 1.9190 -3.6654 -6.9276 27 6 2.7841 -0.0426 -4.7860 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6054 -0.2617 2.1369 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0728 0.4259 34 1 3.8532 0.4371 1.3573 35 1 3.6404 -0.8758 3.4505 36 1 3.7866 -2.3852 2.5185 37 1 2.2490 -1.6318 -1.1526 38 1 3.8227 -2.2588 -2.8594 39 1 2.1392 -2.7011 -3.2587 40 1 3.0455 -3.3339 -5.3100 41 1 4.4847 -2.2835 -5.0975 42 1 0.8037 -0.8285 -6.3881 43 1 3.3975 -1.6319 -10.1909 44 1 1.9945 0.6819 -4.9857 45 1 3.7615 0.4358 -4.8484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592018748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:12 Heat of formation + Delta-G solvation = -270.880699 kcal Electronic energy + Delta-G solvation = -30452.394505 eV Core-core repulsion = 25667.307621 eV Total energy + Delta-G solvation = -4785.086884 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.04229 -48.55468 -48.54283 -41.39194 -39.58315 -37.75505 -36.30586 -34.98128 -34.45110 -32.59762 -31.17878 -29.87853 -29.15200 -27.04806 -25.13370 -24.13557 -22.67757 -22.02210 -21.48422 -21.08740 -19.59084 -19.49409 -19.26554 -18.92927 -18.21417 -17.43059 -17.00786 -16.97968 -16.53141 -16.11689 -15.63368 -15.54712 -15.45477 -15.15448 -15.02949 -14.95411 -14.74090 -14.69235 -14.59221 -14.53215 -14.23064 -14.00072 -13.69791 -13.39143 -13.20105 -13.14199 -13.12253 -13.01972 -12.73564 -12.59738 -12.28449 -12.20426 -12.05586 -11.94195 -11.79456 -11.60752 -11.29545 -11.19417 -10.63338 -10.40018 -10.15396 -9.39167 -8.33313 -6.47143 1.51806 1.53992 1.66890 1.75906 1.89765 2.18090 2.46622 2.91607 2.97992 3.07950 3.09255 3.15692 3.50013 3.74698 3.86393 3.99601 4.06652 4.08972 4.27285 4.28575 4.43652 4.44135 4.53396 4.62080 4.65606 4.69626 4.83905 4.87989 4.89198 4.96336 5.03498 5.13751 5.22882 5.23377 5.31144 5.38947 5.39904 5.54973 5.68521 6.05598 6.16250 6.58913 6.90220 7.06589 7.30837 7.60556 8.79844 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.002662 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.411893 B =10516.651226 C =11416.851272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.155 3.845 3 H 0.063 0.937 4 C -0.108 4.108 5 C -0.127 4.127 6 C -0.153 4.153 7 C 0.441 3.559 8 F -0.197 7.197 9 F -0.192 7.192 10 F -0.196 7.196 11 N -0.724 5.724 12 C 0.715 3.285 13 O -0.641 6.641 14 N -0.632 5.632 15 C 0.109 3.891 16 C -0.119 4.119 17 C 0.218 3.782 18 O -0.558 6.558 19 C -0.548 4.548 20 H 0.042 0.958 21 C 0.024 3.976 22 N -0.938 5.938 23 Si 1.013 2.987 24 H -0.287 1.287 25 H -0.338 1.338 26 H -0.253 1.253 27 C 0.118 3.882 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.026 0.974 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.408 0.592 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.379 0.621 43 H 0.267 0.733 44 H 0.056 0.944 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.519 -5.255 29.324 29.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.050 3.950 3 H 0.081 0.919 4 C -0.146 4.146 5 C -0.165 4.165 6 C -0.190 4.190 7 C 0.388 3.612 8 F -0.179 7.179 9 F -0.174 7.174 10 F -0.178 7.178 11 N -0.381 5.381 12 C 0.417 3.583 13 O -0.523 6.523 14 N -0.369 5.369 15 C -0.013 4.013 16 C -0.157 4.157 17 C 0.177 3.823 18 O -0.367 6.367 19 C -0.586 4.586 20 H 0.061 0.939 21 C -0.176 4.176 22 N -0.576 5.576 23 Si 0.846 3.154 24 H -0.214 1.214 25 H -0.270 1.270 26 H -0.178 1.178 27 C -0.007 4.007 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.045 0.955 31 H 0.127 0.873 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.244 0.756 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.228 0.772 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.484 -4.942 29.443 30.057 hybrid contribution 0.239 0.188 -1.246 1.283 sum -3.244 -4.754 28.196 28.778 Atomic orbital electron populations 1.22149 0.94908 1.02732 1.01915 1.20965 0.94157 0.96624 0.83248 0.91899 1.21798 0.93350 1.02804 0.96647 1.21600 0.97446 1.00981 0.96502 1.22948 0.85159 1.07505 1.03432 1.21244 0.94423 0.72813 0.72759 1.93168 1.93679 1.34931 1.96081 1.93177 1.91193 1.81237 1.51790 1.93178 1.88260 1.84255 1.52079 1.45140 1.71116 1.14016 1.07825 1.15678 0.78022 0.84147 0.80480 1.90856 1.59863 1.16483 1.85098 1.47630 1.68274 1.12113 1.08836 1.22114 1.00434 0.80877 0.97864 1.22852 1.00726 0.99415 0.92679 1.20116 0.79669 0.91280 0.91247 1.86058 1.23430 1.41057 1.86109 1.21350 1.18894 1.25418 0.92969 0.93934 1.25900 0.98216 0.99104 0.94389 1.70096 1.45306 1.42806 0.99408 0.84642 0.77704 0.77770 0.75270 1.21448 1.27047 1.17767 1.22586 1.00106 0.96725 0.81246 0.91110 0.89536 0.95487 0.87295 0.88531 0.91689 0.91793 0.84908 0.84895 0.75597 0.89424 0.90214 0.90008 0.89914 0.77204 0.92424 0.92538 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.48 71.98 0.68 -1.92 16 2 C 0.15 2.65 2.57 44.99 0.12 2.76 16 3 H 0.06 1.44 7.58 -2.39 -0.02 1.42 16 4 C -0.11 -0.81 4.75 30.59 0.15 -0.66 16 5 C -0.13 -1.31 4.86 30.59 0.15 -1.16 16 6 C -0.15 -0.97 5.26 30.59 0.16 -0.81 16 7 C 0.44 6.20 3.16 71.98 0.23 6.42 16 8 F -0.20 -3.53 16.80 44.97 0.76 -2.77 16 9 F -0.19 -2.92 17.32 44.97 0.78 -2.14 16 10 F -0.20 -3.57 16.80 44.97 0.76 -2.81 16 11 N -0.72 -15.70 4.49 -457.81 -2.06 -17.75 16 12 C 0.71 23.69 8.45 179.05 1.51 25.21 16 13 O -0.64 -26.84 16.26 -3.97 -0.06 -26.90 16 14 N -0.63 -21.30 3.33 -829.68 -2.76 -24.06 16 15 C 0.11 3.00 6.15 86.73 0.53 3.53 16 16 C -0.12 -4.21 5.90 31.79 0.19 -4.03 16 17 C 0.22 9.27 0.70 -10.14 -0.01 9.26 16 18 O -0.56 -22.90 8.52 -148.98 -1.27 -24.17 16 19 C -0.55 -29.30 8.89 25.60 0.23 -29.07 16 20 H 0.04 2.55 8.00 -2.91 -0.02 2.52 16 21 C 0.02 1.31 5.46 84.65 0.46 1.78 16 22 N -0.94 -56.93 13.96 21.45 0.30 -56.63 16 23 Si 1.01 47.22 24.93 68.60 1.71 48.93 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.34 -16.31 7.11 99.48 0.71 -15.60 16 26 H -0.25 -10.95 5.42 99.48 0.54 -10.41 16 27 C 0.12 4.77 6.07 86.87 0.53 5.30 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.06 0.87 7.41 -2.38 -0.02 0.86 16 34 H 0.06 0.87 7.80 -2.38 -0.02 0.85 16 35 H 0.13 0.27 8.14 -2.38 -0.02 0.25 16 36 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.41 6.54 7.59 -92.71 -0.70 5.84 16 38 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.08 2.89 6.65 -2.39 -0.02 2.88 16 41 H 0.08 2.96 8.03 -2.39 -0.02 2.94 16 42 H 0.38 14.25 8.99 -74.06 -0.67 13.58 16 43 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 44 H 0.06 2.40 8.02 -2.39 -0.02 2.38 16 45 H 0.05 2.32 7.99 -2.39 -0.02 2.30 16 Total: -1.00 -75.02 373.38 2.56 -72.45 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -0.51 Total: 19.26 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 4.93 Total: 16.60 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -4.52 Total: -98.45 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -1.33 Total: -51.07 kcal Atomic # 9 Polarization: -10.02 SS G_CDS: 2.29 Total: -7.73 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.71 Total: 48.93 kcal Total: -75.02 2.56 -72.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592018748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.426 kcal (2) G-P(sol) polarization free energy of solvation -75.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds