Wall clock time and date at job start Tue Mar 31 2020 20:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46893 * 2 1 4 4 C 1.53004 * 109.47480 * 119.99905 * 2 1 3 5 5 C 1.52999 * 109.47210 * 184.99975 * 4 2 1 6 6 C 1.53000 * 109.46885 * 180.02562 * 5 4 2 7 7 C 1.53007 * 109.46659 * 180.02562 * 6 5 4 8 8 F 1.39894 * 109.47508 * 60.00511 * 7 6 5 9 9 F 1.39903 * 109.46681 * 180.02562 * 7 6 5 10 10 F 1.39903 * 109.47087 * 299.99864 * 7 6 5 11 11 N 1.46496 * 109.47277 * 240.00328 * 2 1 3 12 12 C 1.34778 * 119.99967 * 84.99845 * 11 2 1 13 13 O 1.21585 * 119.99945 * 359.97438 * 12 11 2 14 14 N 1.34774 * 120.00134 * 180.02562 * 12 11 2 15 15 C 1.47031 * 125.64691 * 0.02562 * 14 12 11 16 16 C 1.54327 * 107.26879 * 181.01415 * 15 14 12 17 17 C 1.55156 * 102.94181 * 22.19441 * 16 15 14 18 18 O 1.42897 * 111.00579 * 82.57426 * 17 16 15 19 19 C 1.50708 * 110.99876 * 206.38340 * 17 16 15 20 20 H 1.07995 * 120.00149 * 0.02562 * 19 17 16 21 21 C 1.37875 * 119.99534 * 180.02562 * 19 17 16 22 22 N 1.31519 * 120.00164 * 359.97438 * 21 19 17 23 23 Si 1.86799 * 119.99936 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47735 * 89.99495 * 23 21 19 25 25 H 1.48505 * 109.47173 * 210.00035 * 23 21 19 26 26 H 1.48511 * 109.46932 * 329.99328 * 23 21 19 27 27 C 1.47422 * 125.65171 * 179.97438 * 14 12 11 28 28 H 1.09002 * 109.46893 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47152 * 299.99292 * 1 2 3 30 30 H 1.08998 * 109.46995 * 59.99705 * 1 2 3 31 31 H 1.08996 * 109.47226 * 305.00267 * 4 2 1 32 32 H 1.08998 * 109.46222 * 65.00237 * 4 2 1 33 33 H 1.08996 * 109.47265 * 300.00268 * 5 4 2 34 34 H 1.09000 * 109.46818 * 60.00133 * 5 4 2 35 35 H 1.08996 * 109.47304 * 300.00141 * 6 5 4 36 36 H 1.08993 * 109.46793 * 60.00656 * 6 5 4 37 37 H 0.97000 * 120.00179 * 264.99590 * 11 2 1 38 38 H 1.08998 * 109.88059 * 61.59780 * 15 14 12 39 39 H 1.08994 * 109.87878 * 300.43060 * 15 14 12 40 40 H 1.09001 * 110.71763 * 140.55775 * 16 15 14 41 41 H 1.08997 * 110.72099 * 263.64813 * 16 15 14 42 42 H 0.96698 * 114.00190 * 179.97438 * 18 17 16 43 43 H 0.97003 * 119.99594 * 180.02562 * 22 21 19 44 44 H 1.09000 * 110.36378 * 37.07938 * 27 14 12 45 45 H 1.09001 * 110.46274 * 274.80114 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3136 6 6 4.0750 -1.3350 2.5625 7 6 5.5998 -1.2264 2.6272 8 9 5.9694 0.1216 2.6842 9 9 6.0663 -1.8869 3.7689 10 9 6.1580 -1.8154 1.4875 11 7 2.0184 -0.6905 -1.1962 12 6 2.1471 -0.0181 -2.3571 13 8 1.8574 1.1615 -2.4117 14 7 2.5959 -0.6534 -3.4577 15 6 2.9787 -2.0711 -3.5325 16 6 3.4511 -2.3424 -4.9764 17 6 3.8432 -0.9300 -5.4850 18 8 5.1628 -0.5813 -5.0618 19 6 3.7191 -0.8421 -6.9844 20 1 3.3914 -1.7015 -7.5504 21 6 4.0238 0.3355 -7.6334 22 7 4.4224 1.3822 -6.9440 23 14 3.8693 0.4448 -9.4918 24 1 2.4991 0.8921 -9.8492 25 1 4.8604 1.4194 -10.0145 26 1 4.1258 -0.8905 -10.0891 27 6 2.7833 -0.0425 -4.7862 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.6055 -0.2618 2.1370 32 1 1.7517 -1.7715 1.2055 33 1 3.9995 -1.0727 0.4259 34 1 3.8532 0.4370 1.3573 35 1 3.6404 -0.8760 3.4505 36 1 3.7867 -2.3852 2.5183 37 1 2.2491 -1.6317 -1.1527 38 1 2.1194 -2.6998 -3.2993 39 1 3.7896 -2.2734 -2.8329 40 1 4.3147 -3.0075 -4.9810 41 1 2.6415 -2.7599 -5.5751 42 1 5.4521 0.2931 -5.3562 43 1 4.6364 2.2109 -7.4007 44 1 3.1504 0.9789 -4.6856 45 1 1.8486 -0.0553 -5.3468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592018749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:15 Heat of formation + Delta-G solvation = -274.208646 kcal Electronic energy + Delta-G solvation = -30593.770431 eV Core-core repulsion = 25808.539237 eV Total energy + Delta-G solvation = -4785.231194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.04704 -48.55891 -48.54808 -41.28725 -39.32485 -37.69103 -36.04400 -34.96587 -34.14734 -32.51068 -31.10580 -29.51444 -29.14783 -26.94531 -25.15542 -24.24767 -22.66400 -21.95002 -21.40024 -20.99935 -19.49864 -19.33655 -19.22422 -18.83788 -18.20260 -17.38719 -17.00736 -16.75055 -16.26326 -16.07231 -15.64929 -15.49380 -15.19273 -15.11480 -14.97750 -14.82539 -14.72528 -14.69562 -14.62784 -14.55828 -14.18549 -13.70921 -13.49698 -13.32748 -13.16997 -13.13357 -13.01834 -12.83797 -12.62313 -12.47907 -12.31401 -12.20849 -12.08480 -12.05734 -11.80336 -11.61265 -11.28745 -11.16703 -10.64701 -10.32617 -10.12319 -9.28487 -8.25304 -6.42502 1.42215 1.44041 1.54143 1.75577 1.89453 2.22192 2.38344 2.91458 3.00857 3.07646 3.15073 3.15753 3.74760 3.82271 3.98816 4.06565 4.13034 4.19730 4.28345 4.36143 4.43798 4.52857 4.63917 4.65724 4.68859 4.77287 4.87954 4.89511 5.02693 5.06104 5.10830 5.16724 5.29413 5.34380 5.38931 5.42364 5.46278 5.70192 5.77414 6.03849 6.24735 6.65145 7.13798 7.30477 7.39641 7.65354 8.80235 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014518 B = 0.002792 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.161275 B =10026.466860 C =11050.276199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.152 3.848 3 H 0.056 0.944 4 C -0.106 4.106 5 C -0.129 4.129 6 C -0.151 4.151 7 C 0.440 3.560 8 F -0.198 7.198 9 F -0.191 7.191 10 F -0.197 7.197 11 N -0.723 5.723 12 C 0.709 3.291 13 O -0.647 6.647 14 N -0.634 5.634 15 C 0.109 3.891 16 C -0.111 4.111 17 C 0.232 3.768 18 O -0.591 6.591 19 C -0.555 4.555 20 H 0.071 0.929 21 C 0.023 3.977 22 N -0.919 5.919 23 Si 0.966 3.034 24 H -0.277 1.277 25 H -0.284 1.284 26 H -0.264 1.264 27 C 0.127 3.873 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.024 0.976 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.407 0.593 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.376 0.624 43 H 0.270 0.730 44 H 0.034 0.966 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.997 -10.028 21.355 24.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.074 0.926 4 C -0.144 4.144 5 C -0.167 4.167 6 C -0.188 4.188 7 C 0.387 3.613 8 F -0.179 7.179 9 F -0.172 7.172 10 F -0.179 7.179 11 N -0.380 5.380 12 C 0.411 3.589 13 O -0.530 6.530 14 N -0.371 5.371 15 C -0.013 4.013 16 C -0.149 4.149 17 C 0.191 3.809 18 O -0.400 6.400 19 C -0.593 4.593 20 H 0.089 0.911 21 C -0.177 4.177 22 N -0.559 5.559 23 Si 0.792 3.208 24 H -0.202 1.202 25 H -0.210 1.210 26 H -0.188 1.188 27 C 0.003 3.997 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.043 0.957 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.244 0.756 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.227 0.773 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.167 -9.567 21.672 24.247 hybrid contribution 0.706 1.079 -1.654 2.097 sum -4.461 -8.488 20.018 22.196 Atomic orbital electron populations 1.22136 0.94574 1.02912 1.01855 1.20985 0.94429 0.96446 0.83385 0.92571 1.21793 0.93085 1.02926 0.96548 1.21603 0.97728 1.00836 0.96548 1.22941 0.85078 1.07554 1.03248 1.21271 0.94504 0.72800 0.72760 1.93165 1.93689 1.35007 1.96078 1.93173 1.91192 1.81137 1.51735 1.93183 1.88270 1.84265 1.52176 1.45103 1.71321 1.13916 1.07696 1.15808 0.78235 0.84181 0.80679 1.90838 1.60097 1.16791 1.85239 1.47844 1.67677 1.12363 1.09191 1.22090 1.00045 0.80806 0.98369 1.22599 1.01408 0.96439 0.94469 1.19862 0.79278 0.90554 0.91196 1.86047 1.33728 1.40735 1.79472 1.21855 1.46511 0.98466 0.92514 0.91061 1.25869 0.93407 0.94982 1.03447 1.69700 1.45606 1.02958 1.37647 0.85424 0.77775 0.78215 0.79420 1.20247 1.21013 1.18776 1.22640 0.98753 0.97723 0.80609 0.90676 0.89421 0.95703 0.87080 0.88182 0.92125 0.92150 0.84692 0.84667 0.75633 0.88987 0.91108 0.89821 0.89204 0.77326 0.92062 0.94721 0.94161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.48 71.98 0.68 -2.30 16 2 C 0.15 3.22 2.57 44.99 0.12 3.33 16 3 H 0.06 1.57 7.58 -2.39 -0.02 1.56 16 4 C -0.11 -1.12 4.75 30.60 0.15 -0.97 16 5 C -0.13 -1.85 4.86 30.59 0.15 -1.70 16 6 C -0.15 -1.38 5.26 30.60 0.16 -1.22 16 7 C 0.44 7.55 3.16 71.98 0.23 7.77 16 8 F -0.20 -4.22 16.80 44.97 0.76 -3.47 16 9 F -0.19 -3.33 17.32 44.97 0.78 -2.55 16 10 F -0.20 -4.34 16.80 44.97 0.76 -3.59 16 11 N -0.72 -19.20 4.49 -457.81 -2.06 -21.25 16 12 C 0.71 28.39 8.45 179.05 1.51 29.91 16 13 O -0.65 -32.24 16.26 -3.98 -0.06 -32.30 16 14 N -0.63 -26.00 3.33 -829.75 -2.76 -28.76 16 15 C 0.11 3.46 6.15 86.73 0.53 3.99 16 16 C -0.11 -4.16 6.12 31.78 0.19 -3.97 16 17 C 0.23 11.33 0.89 -10.15 -0.01 11.32 16 18 O -0.59 -31.28 13.18 -148.98 -1.96 -33.24 16 19 C -0.56 -29.03 8.25 25.60 0.21 -28.82 16 20 H 0.07 3.57 7.76 -2.91 -0.02 3.54 16 21 C 0.02 1.23 5.30 84.65 0.45 1.68 16 22 N -0.92 -51.11 10.72 21.45 0.23 -50.88 16 23 Si 0.97 42.09 29.54 68.60 2.03 44.12 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 27 C 0.13 6.36 5.63 86.85 0.49 6.85 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 1.13 7.41 -2.39 -0.02 1.11 16 34 H 0.06 1.10 7.80 -2.39 -0.02 1.08 16 35 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.41 8.23 7.59 -92.71 -0.70 7.52 16 38 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.09 3.09 8.02 -2.39 -0.02 3.07 16 42 H 0.38 21.21 6.93 -74.06 -0.51 20.69 16 43 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 44 H 0.03 2.02 7.64 -2.39 -0.02 2.00 16 45 H 0.04 2.09 8.03 -2.39 -0.02 2.07 16 Total: -1.00 -72.85 379.12 2.37 -70.48 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.19 Total: 35.57 kcal Atomic # 6 Polarization: 21.01 SS G_CDS: 4.86 Total: 25.87 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -4.59 Total: -100.89 kcal Atomic # 8 Polarization: -63.52 SS G_CDS: -2.03 Total: -65.55 kcal Atomic # 9 Polarization: -11.89 SS G_CDS: 2.29 Total: -9.60 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -72.85 2.37 -70.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592018749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.726 kcal (2) G-P(sol) polarization free energy of solvation -72.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds