Wall clock time and date at job start Tue Mar 31 2020 21:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47019 * 2 1 4 4 C 1.52994 * 109.47600 * 120.00743 * 2 1 3 5 5 O 1.42900 * 109.46977 * 54.99447 * 4 2 1 6 6 C 1.42903 * 113.99896 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47122 * 180.02562 * 6 5 4 8 8 F 1.39895 * 109.47442 * 60.00058 * 7 6 5 9 9 F 1.39904 * 109.47493 * 180.02562 * 7 6 5 10 10 F 1.39901 * 109.47112 * 299.99978 * 7 6 5 11 11 N 1.46506 * 109.47108 * 240.00927 * 2 1 3 12 12 C 1.34770 * 120.00206 * 84.99314 * 11 2 1 13 13 O 1.21584 * 120.00098 * 5.08301 * 12 11 2 14 14 N 1.34777 * 119.99990 * 185.07826 * 12 11 2 15 15 C 1.46930 * 120.63129 * 354.94493 * 14 12 11 16 16 C 1.53193 * 108.77767 * 126.41238 * 15 14 12 17 17 C 1.53037 * 109.31528 * 54.63289 * 16 15 14 18 18 C 1.53040 * 109.53789 * 298.63873 * 17 16 15 19 19 H 1.09004 * 109.50136 * 301.41055 * 18 17 16 20 20 C 1.50699 * 109.52472 * 181.33086 * 18 17 16 21 21 H 1.08000 * 120.00242 * 0.07658 * 20 18 17 22 22 C 1.37877 * 120.00064 * 180.08106 * 20 18 17 23 23 N 1.31519 * 120.00024 * 179.97438 * 22 20 18 24 24 Si 1.86801 * 120.00307 * 359.97438 * 22 20 18 25 25 H 1.48498 * 109.46797 * 89.99921 * 24 22 20 26 26 H 1.48498 * 109.47294 * 210.00251 * 24 22 20 27 27 H 1.48505 * 109.46863 * 330.00468 * 24 22 20 28 28 C 1.46931 * 120.63305 * 174.96235 * 14 12 11 29 29 H 1.09002 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46767 * 299.99588 * 1 2 3 31 31 H 1.08996 * 109.47229 * 59.99520 * 1 2 3 32 32 H 1.08994 * 109.47834 * 175.00033 * 4 2 1 33 33 H 1.09002 * 109.46677 * 294.99939 * 4 2 1 34 34 H 1.09002 * 109.47070 * 300.00338 * 6 5 4 35 35 H 1.09004 * 109.46883 * 60.00407 * 6 5 4 36 36 H 0.97005 * 119.99639 * 265.00299 * 11 2 1 37 37 H 1.09005 * 109.58466 * 246.20165 * 15 14 12 38 38 H 1.08996 * 109.58242 * 6.47693 * 15 14 12 39 39 H 1.08998 * 109.49494 * 174.58731 * 16 15 14 40 40 H 1.09007 * 109.49200 * 294.68515 * 16 15 14 41 41 H 1.08989 * 109.46318 * 178.61521 * 17 16 15 42 42 H 1.09003 * 109.45750 * 58.65143 * 17 16 15 43 43 H 0.97004 * 120.00216 * 179.97438 * 23 22 20 44 44 H 1.09003 * 109.58557 * 113.79719 * 28 14 12 45 45 H 1.08999 * 109.70038 * 353.44685 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 8 1.4703 -2.0304 1.3092 6 6 1.8837 -2.7927 2.4450 7 6 1.2163 -4.1689 2.4060 8 9 1.5914 -4.8361 1.2350 9 9 1.6206 -4.9151 3.5182 10 9 -0.1739 -4.0138 2.4294 11 7 2.0184 -0.6904 -1.1963 12 6 2.1469 -0.0180 -2.3572 13 8 1.9467 1.1808 -2.3908 14 7 2.4977 -0.6744 -3.4809 15 6 2.8504 -2.1000 -3.4360 16 6 1.9892 -2.8534 -4.4546 17 6 2.1541 -2.2082 -5.8325 18 6 1.6773 -0.7550 -5.7776 19 1 0.6338 -0.7261 -5.4636 20 6 1.8093 -0.1297 -7.1424 21 1 2.1937 -0.7107 -7.9677 22 6 1.4394 1.1841 -7.3374 23 7 1.5550 1.7299 -8.5284 24 14 0.7739 2.1889 -5.9102 25 1 1.8977 2.8680 -5.2166 26 1 -0.1787 3.2063 -6.4227 27 1 0.0738 1.2911 -4.9567 28 6 2.5349 0.0222 -4.7741 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 3.1264 -0.7996 1.2054 33 1 1.7518 -0.1585 2.1368 34 1 2.9668 -2.9139 2.4265 35 1 1.5918 -2.2727 3.3574 36 1 2.2490 -1.6317 -1.1529 37 1 3.9042 -2.2237 -3.6858 38 1 2.6636 -2.4912 -2.4359 39 1 2.3072 -3.8949 -4.5001 40 1 0.9428 -2.8047 -4.1530 41 1 1.5615 -2.7574 -6.5639 42 1 3.2045 -2.2349 -6.1226 43 1 1.2944 2.6542 -8.6658 44 1 3.5630 0.0715 -5.1330 45 1 2.1391 1.0313 -4.6594 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595477816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:43 Heat of formation + Delta-G solvation = -223.843046 kcal Electronic energy + Delta-G solvation = -30957.066047 eV Core-core repulsion = 26174.018869 eV Total energy + Delta-G solvation = -4783.047178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.49542 -48.06360 -47.93896 -40.19282 -38.88200 -37.20459 -35.25589 -33.46463 -32.03310 -31.12288 -30.35393 -29.68844 -26.71740 -25.18622 -24.67011 -23.75649 -22.01299 -21.54613 -20.09215 -19.08045 -19.03036 -19.01243 -18.29167 -17.71862 -17.07539 -16.67680 -16.52366 -15.76811 -15.10364 -14.96937 -14.87299 -14.76988 -14.41210 -14.30395 -14.12660 -14.11631 -14.04310 -13.87732 -13.74278 -13.61441 -12.97352 -12.92629 -12.75093 -12.62340 -12.27137 -12.14919 -12.14048 -11.62965 -11.30145 -11.14209 -11.02670 -10.57751 -10.46321 -10.37226 -10.06932 -9.78247 -9.67649 -9.20362 -9.07560 -8.98474 -8.55495 -7.94166 -6.07163 -4.08552 1.98046 2.80884 2.95985 3.34663 3.42359 3.50228 3.52140 3.56786 3.62439 3.96803 4.13871 4.39377 4.46436 4.47649 4.51005 4.68841 4.84545 5.14832 5.24038 5.25725 5.32713 5.38049 5.48249 5.62505 5.83195 5.90129 6.02989 6.13526 6.18626 6.23342 6.27037 6.44371 6.57516 6.63831 6.67223 6.76723 6.91352 7.15449 7.36236 7.49168 7.76765 8.29661 8.51471 8.94934 8.96898 9.54678 11.04766 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.002940 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.834652 B = 9520.721051 C =10389.005366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.165 3.835 3 H 0.105 0.895 4 C 0.056 3.944 5 O -0.368 6.368 6 C 0.018 3.982 7 C 0.461 3.539 8 F -0.174 7.174 9 F -0.179 7.179 10 F -0.175 7.175 11 N -0.747 5.747 12 C 0.703 3.297 13 O -0.594 6.594 14 N -0.624 5.624 15 C 0.116 3.884 16 C -0.136 4.136 17 C -0.099 4.099 18 C 0.004 3.996 19 H 0.030 0.970 20 C -0.515 4.515 21 H 0.077 0.923 22 C 0.072 3.928 23 N -0.897 5.897 24 Si 0.882 3.118 25 H -0.272 1.272 26 H -0.297 1.297 27 H -0.264 1.264 28 C 0.120 3.880 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.397 0.603 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.265 0.735 44 H 0.063 0.937 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.496 -11.456 26.379 28.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.059 3.941 3 H 0.123 0.877 4 C -0.020 4.020 5 O -0.287 6.287 6 C -0.061 4.061 7 C 0.407 3.593 8 F -0.155 7.155 9 F -0.160 7.160 10 F -0.156 7.156 11 N -0.407 5.407 12 C 0.404 3.596 13 O -0.472 6.472 14 N -0.360 5.360 15 C -0.008 4.008 16 C -0.174 4.174 17 C -0.137 4.137 18 C -0.016 4.016 19 H 0.048 0.952 20 C -0.554 4.554 21 H 0.095 0.905 22 C -0.130 4.130 23 N -0.535 5.535 24 Si 0.712 3.288 25 H -0.198 1.198 26 H -0.225 1.225 27 H -0.189 1.189 28 C -0.001 4.001 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.234 0.766 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.178 -10.498 26.077 28.195 hybrid contribution -0.169 0.011 0.947 0.963 sum 2.009 -10.487 27.025 29.058 Atomic orbital electron populations 1.22132 0.94731 1.02857 1.02385 1.20812 0.95022 0.96542 0.81689 0.87706 1.23051 0.97858 0.82181 0.98917 1.87949 1.70353 1.27626 1.42771 1.23507 1.00550 0.88911 0.93114 1.20183 0.77482 0.87896 0.73784 1.93234 1.91007 1.82746 1.48562 1.93213 1.90496 1.78782 1.53521 1.93232 1.30630 1.95730 1.96054 1.45324 1.72660 1.13820 1.08864 1.15939 0.78104 0.85135 0.80382 1.90893 1.58667 1.12829 1.84853 1.47665 1.70717 1.10161 1.07452 1.21557 0.99160 0.81180 0.98868 1.21983 0.99967 0.98418 0.97077 1.21422 1.01056 0.97172 0.94047 1.19507 0.95172 0.92058 0.94860 0.95211 1.20960 1.43893 0.97113 0.93386 0.90488 1.25048 0.94680 0.97763 0.95528 1.69897 1.47826 1.13979 1.21762 0.86952 0.79588 0.80323 0.81975 1.19844 1.22460 1.18922 1.22476 1.01178 0.97039 0.79396 0.91605 0.92013 0.91759 0.91669 0.90884 0.88533 0.88531 0.76593 0.91640 0.91624 0.91725 0.92000 0.92268 0.92535 0.92552 0.91858 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.29 37.16 0.35 -1.55 16 2 C 0.17 1.84 3.02 -67.93 -0.21 1.63 16 3 H 0.11 1.28 7.51 -51.93 -0.39 0.89 16 4 C 0.06 0.39 5.68 37.15 0.21 0.60 16 5 O -0.37 -2.86 9.08 -35.23 -0.32 -3.18 16 6 C 0.02 0.09 5.90 37.16 0.22 0.31 16 7 C 0.46 3.41 3.32 37.16 0.12 3.53 16 8 F -0.17 -1.60 17.26 2.25 0.04 -1.56 16 9 F -0.18 -1.28 17.32 2.25 0.04 -1.25 16 10 F -0.18 -1.62 17.26 2.25 0.04 -1.58 16 11 N -0.75 -10.16 4.97 -58.68 -0.29 -10.45 16 12 C 0.70 13.24 8.26 -86.92 -0.72 12.53 16 13 O -0.59 -13.65 15.41 5.29 0.08 -13.57 16 14 N -0.62 -11.75 2.97 -178.49 -0.53 -12.28 16 15 C 0.12 1.66 6.43 -3.71 -0.02 1.63 16 16 C -0.14 -2.04 6.08 -26.61 -0.16 -2.20 16 17 C -0.10 -1.88 5.11 -26.69 -0.14 -2.02 16 18 C 0.00 0.09 1.84 -91.65 -0.17 -0.08 16 19 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 20 C -0.52 -14.43 9.15 -34.44 -0.31 -14.74 16 21 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 22 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 23 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 24 Si 0.88 23.65 24.32 -169.99 -4.13 19.51 16 25 H -0.27 -7.38 6.92 56.52 0.39 -6.99 16 26 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 27 H -0.26 -7.13 6.53 56.52 0.37 -6.76 16 28 C 0.12 2.74 5.10 -3.71 -0.02 2.72 16 29 H 0.06 0.78 7.56 -51.93 -0.39 0.39 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.40 4.59 5.84 -40.82 -0.24 4.36 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.75 5.56 -51.93 -0.29 0.46 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 1.12 8.14 -51.94 -0.42 0.70 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 44 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.08 2.02 2.36 -51.93 -0.12 1.90 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -34.87 367.75 -6.19 -41.06 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.48 Total: 0.33 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.95 Total: 4.39 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.05 Total: -49.69 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.24 Total: -16.75 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.12 Total: -4.39 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -4.13 Total: 19.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.87 -6.19 -41.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595477816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.784 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds