Wall clock time and date at job start Tue Mar 31 2020 21:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47019 * 2 1 4 4 C 1.52994 * 109.47600 * 120.00743 * 2 1 3 5 5 O 1.42900 * 109.46977 * 54.99447 * 4 2 1 6 6 C 1.42903 * 113.99896 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47122 * 180.02562 * 6 5 4 8 8 F 1.39895 * 109.47442 * 60.00058 * 7 6 5 9 9 F 1.39904 * 109.47493 * 180.02562 * 7 6 5 10 10 F 1.39901 * 109.47112 * 299.99978 * 7 6 5 11 11 N 1.46506 * 109.47108 * 240.00927 * 2 1 3 12 12 C 1.34770 * 120.00206 * 84.99314 * 11 2 1 13 13 O 1.21584 * 120.00098 * 5.08301 * 12 11 2 14 14 N 1.34777 * 119.99990 * 185.07826 * 12 11 2 15 15 C 1.46930 * 120.63129 * 354.94493 * 14 12 11 16 16 C 1.53193 * 108.77767 * 126.41238 * 15 14 12 17 17 C 1.53037 * 109.31528 * 54.63289 * 16 15 14 18 18 C 1.53040 * 109.53789 * 298.63873 * 17 16 15 19 19 H 1.09004 * 109.50136 * 301.41055 * 18 17 16 20 20 C 1.50699 * 109.52472 * 181.33086 * 18 17 16 21 21 H 1.08000 * 120.00242 * 0.07658 * 20 18 17 22 22 C 1.37877 * 120.00064 * 180.08106 * 20 18 17 23 23 N 1.31519 * 120.00024 * 179.97438 * 22 20 18 24 24 Si 1.86801 * 120.00307 * 359.97438 * 22 20 18 25 25 H 1.48498 * 109.46797 * 89.99921 * 24 22 20 26 26 H 1.48498 * 109.47294 * 210.00251 * 24 22 20 27 27 H 1.48505 * 109.46863 * 330.00468 * 24 22 20 28 28 C 1.46931 * 120.63305 * 174.96235 * 14 12 11 29 29 H 1.09002 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46767 * 299.99588 * 1 2 3 31 31 H 1.08996 * 109.47229 * 59.99520 * 1 2 3 32 32 H 1.08994 * 109.47834 * 175.00033 * 4 2 1 33 33 H 1.09002 * 109.46677 * 294.99939 * 4 2 1 34 34 H 1.09002 * 109.47070 * 300.00338 * 6 5 4 35 35 H 1.09004 * 109.46883 * 60.00407 * 6 5 4 36 36 H 0.97005 * 119.99639 * 265.00299 * 11 2 1 37 37 H 1.09005 * 109.58466 * 246.20165 * 15 14 12 38 38 H 1.08996 * 109.58242 * 6.47693 * 15 14 12 39 39 H 1.08998 * 109.49494 * 174.58731 * 16 15 14 40 40 H 1.09007 * 109.49200 * 294.68515 * 16 15 14 41 41 H 1.08989 * 109.46318 * 178.61521 * 17 16 15 42 42 H 1.09003 * 109.45750 * 58.65143 * 17 16 15 43 43 H 0.97004 * 120.00216 * 179.97438 * 23 22 20 44 44 H 1.09003 * 109.58557 * 113.79719 * 28 14 12 45 45 H 1.08999 * 109.70038 * 353.44685 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 8 1.4703 -2.0304 1.3092 6 6 1.8837 -2.7927 2.4450 7 6 1.2163 -4.1689 2.4060 8 9 1.5914 -4.8361 1.2350 9 9 1.6206 -4.9151 3.5182 10 9 -0.1739 -4.0138 2.4294 11 7 2.0184 -0.6904 -1.1963 12 6 2.1469 -0.0180 -2.3572 13 8 1.9467 1.1808 -2.3908 14 7 2.4977 -0.6744 -3.4809 15 6 2.8504 -2.1000 -3.4360 16 6 1.9892 -2.8534 -4.4546 17 6 2.1541 -2.2082 -5.8325 18 6 1.6773 -0.7550 -5.7776 19 1 0.6338 -0.7261 -5.4636 20 6 1.8093 -0.1297 -7.1424 21 1 2.1937 -0.7107 -7.9677 22 6 1.4394 1.1841 -7.3374 23 7 1.5550 1.7299 -8.5284 24 14 0.7739 2.1889 -5.9102 25 1 1.8977 2.8680 -5.2166 26 1 -0.1787 3.2063 -6.4227 27 1 0.0738 1.2911 -4.9567 28 6 2.5349 0.0222 -4.7741 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 3.1264 -0.7996 1.2054 33 1 1.7518 -0.1585 2.1368 34 1 2.9668 -2.9139 2.4265 35 1 1.5918 -2.2727 3.3574 36 1 2.2490 -1.6317 -1.1529 37 1 3.9042 -2.2237 -3.6858 38 1 2.6636 -2.4912 -2.4359 39 1 2.3072 -3.8949 -4.5001 40 1 0.9428 -2.8047 -4.1530 41 1 1.5615 -2.7574 -6.5639 42 1 3.2045 -2.2349 -6.1226 43 1 1.2944 2.6542 -8.6658 44 1 3.5630 0.0715 -5.1330 45 1 2.1391 1.0313 -4.6594 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595477816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:42 Heat of formation + Delta-G solvation = -248.777125 kcal Electronic energy + Delta-G solvation = -30958.147270 eV Core-core repulsion = 26174.018869 eV Total energy + Delta-G solvation = -4784.128401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.05469 -48.61396 -48.54508 -41.53839 -39.58574 -38.59901 -36.36731 -35.33183 -33.75787 -32.39543 -31.68360 -30.41372 -27.42328 -27.01871 -26.21001 -24.22388 -23.57025 -22.60124 -21.46559 -20.54820 -19.59590 -19.57807 -19.30991 -18.88036 -18.60245 -17.83463 -17.12426 -16.85482 -16.47153 -16.42530 -15.68402 -15.52682 -15.44653 -15.35382 -15.29743 -14.99385 -14.97746 -14.84073 -14.72620 -14.70793 -14.56491 -14.37788 -13.93242 -13.75710 -13.42517 -13.31329 -13.08350 -12.91385 -12.76164 -12.33440 -12.30818 -12.12816 -12.04844 -11.83994 -11.59492 -11.36727 -11.06088 -10.98186 -10.86568 -10.79197 -10.23923 -9.42029 -8.39086 -6.40520 1.23474 1.29519 1.41950 1.51219 1.64961 2.14023 2.21358 2.33810 2.88937 2.92977 3.00343 3.06313 3.45144 3.77997 3.96415 4.05033 4.07442 4.14246 4.18495 4.19224 4.35558 4.44293 4.46917 4.50774 4.57673 4.63783 4.71061 4.78003 4.87537 4.94852 4.98960 5.14114 5.20763 5.30489 5.41214 5.52674 5.54819 5.62189 5.70195 5.82193 6.01898 6.27101 6.68121 7.01476 7.25126 7.55692 8.76978 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.002940 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.834652 B = 9520.721051 C =10389.005366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.092 0.908 4 C 0.068 3.932 5 O -0.391 6.391 6 C 0.021 3.979 7 C 0.455 3.545 8 F -0.188 7.188 9 F -0.179 7.179 10 F -0.190 7.190 11 N -0.726 5.726 12 C 0.696 3.304 13 O -0.642 6.642 14 N -0.629 5.629 15 C 0.112 3.888 16 C -0.127 4.127 17 C -0.097 4.097 18 C 0.004 3.996 19 H 0.010 0.990 20 C -0.510 4.510 21 H 0.052 0.948 22 C 0.029 3.971 23 N -0.937 5.937 24 Si 0.940 3.060 25 H -0.280 1.280 26 H -0.294 1.294 27 H -0.272 1.272 28 C 0.128 3.872 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.022 0.978 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.410 0.590 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.267 0.733 44 H 0.062 0.938 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.469 -13.369 29.801 32.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.051 3.949 3 H 0.110 0.890 4 C -0.008 4.008 5 O -0.311 6.311 6 C -0.057 4.057 7 C 0.401 3.599 8 F -0.169 7.169 9 F -0.161 7.161 10 F -0.172 7.172 11 N -0.385 5.385 12 C 0.397 3.603 13 O -0.525 6.525 14 N -0.365 5.365 15 C -0.010 4.010 16 C -0.165 4.165 17 C -0.134 4.134 18 C -0.016 4.016 19 H 0.029 0.971 20 C -0.549 4.549 21 H 0.070 0.930 22 C -0.170 4.170 23 N -0.577 5.577 24 Si 0.770 3.230 25 H -0.207 1.207 26 H -0.222 1.222 27 H -0.198 1.198 28 C 0.005 3.995 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.041 0.959 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.249 0.751 37 H 0.104 0.896 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.153 -12.478 29.551 32.232 hybrid contribution -0.478 0.503 -0.095 0.700 sum 2.675 -11.975 29.456 31.909 Atomic orbital electron populations 1.22066 0.95315 1.02445 1.01622 1.21047 0.94572 0.96740 0.82514 0.88983 1.22947 0.98615 0.82000 0.97274 1.87888 1.70987 1.27990 1.44209 1.23691 1.01695 0.87099 0.93196 1.20636 0.76965 0.89047 0.73254 1.93203 1.91038 1.83260 1.49425 1.93210 1.90388 1.79027 1.53427 1.93202 1.32054 1.95824 1.96090 1.45208 1.71242 1.14196 1.07879 1.16183 0.77841 0.84737 0.81495 1.90855 1.60633 1.15222 1.85755 1.47574 1.70989 1.11925 1.06028 1.21903 1.00142 0.78196 1.00776 1.21933 0.99975 1.00377 0.94244 1.21359 1.00976 0.94090 0.97014 1.19434 0.94498 0.95164 0.92499 0.97138 1.21321 1.41879 0.96634 0.95045 0.92989 1.25611 0.95487 0.98968 0.96897 1.69986 1.49936 1.14559 1.23264 0.86028 0.78584 0.78943 0.79397 1.20739 1.22154 1.19768 1.21940 1.00370 0.95664 0.81498 0.91702 0.89432 0.95870 0.89771 0.87852 0.85908 0.85843 0.75090 0.89610 0.88021 0.87531 0.92756 0.92672 0.92013 0.92353 0.91994 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 9.29 71.98 0.67 -2.76 16 2 C 0.16 3.12 3.02 44.99 0.14 3.25 16 3 H 0.09 2.13 7.51 -2.39 -0.02 2.11 16 4 C 0.07 0.64 5.68 71.98 0.41 1.05 16 5 O -0.39 -4.46 9.08 -148.98 -1.35 -5.82 16 6 C 0.02 0.12 5.90 71.98 0.42 0.55 16 7 C 0.46 5.48 3.32 71.98 0.24 5.72 16 8 F -0.19 -3.00 17.26 44.97 0.78 -2.22 16 9 F -0.18 -2.13 17.32 44.97 0.78 -1.35 16 10 F -0.19 -3.14 17.26 44.97 0.78 -2.37 16 11 N -0.73 -18.05 4.97 -457.82 -2.28 -20.33 16 12 C 0.70 25.58 8.26 179.06 1.48 27.06 16 13 O -0.64 -29.91 15.41 -3.98 -0.06 -29.97 16 14 N -0.63 -22.84 2.97 -836.89 -2.49 -25.33 16 15 C 0.11 2.77 6.43 86.36 0.56 3.33 16 16 C -0.13 -3.39 6.08 30.67 0.19 -3.20 16 17 C -0.10 -3.53 5.11 30.62 0.16 -3.38 16 18 C 0.00 0.18 1.84 -11.46 -0.02 0.16 16 19 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 20 C -0.51 -29.33 9.15 25.60 0.23 -29.10 16 21 H 0.05 3.19 7.99 -2.91 -0.02 3.17 16 22 C 0.03 1.75 5.45 84.65 0.46 2.21 16 23 N -0.94 -59.63 13.96 21.45 0.30 -59.34 16 24 Si 0.94 51.26 24.32 68.60 1.67 52.93 16 25 H -0.28 -15.52 6.92 99.48 0.69 -14.83 16 26 H -0.29 -15.63 7.11 99.48 0.71 -14.92 16 27 H -0.27 -14.98 6.53 99.48 0.65 -14.33 16 28 C 0.13 5.88 5.10 86.36 0.44 6.32 16 29 H 0.06 1.42 7.56 -2.39 -0.02 1.41 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.10 0.42 8.14 -2.39 -0.02 0.41 16 34 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.12 0.08 8.14 -2.38 -0.02 0.06 16 36 H 0.41 7.95 5.84 -92.70 -0.54 7.41 16 37 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.10 1.82 5.56 -2.39 -0.01 1.80 16 39 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 44 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 45 H 0.05 2.46 2.36 -2.39 -0.01 2.46 16 Total: -1.00 -80.90 367.75 3.89 -77.01 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 0.40 Total: 5.56 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 5.37 Total: 11.23 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -4.47 Total: -104.99 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -1.41 Total: -35.79 kcal Atomic # 9 Polarization: -8.27 SS G_CDS: 2.33 Total: -5.94 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 1.67 Total: 52.93 kcal Total: -80.90 3.89 -77.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595477816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.770 kcal (2) G-P(sol) polarization free energy of solvation -80.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds