Wall clock time and date at job start Tue Mar 31 2020 21:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47302 * 2 1 4 4 C 1.52997 * 109.47123 * 120.00348 * 2 1 3 5 5 N 1.46508 * 109.46872 * 294.99818 * 4 2 1 6 6 C 1.34779 * 119.99789 * 180.02562 * 5 4 2 7 7 O 1.21585 * 119.99725 * 354.91638 * 6 5 4 8 8 N 1.34774 * 119.99826 * 174.92226 * 6 5 4 9 9 C 1.47076 * 120.88092 * 184.71253 * 8 6 5 10 10 C 1.53695 * 108.27629 * 128.74980 * 9 8 6 11 11 N 1.46904 * 109.25492 * 54.08761 * 10 9 8 12 12 C 1.46897 * 111.00218 * 172.60786 * 11 10 9 13 13 C 1.50706 * 109.47003 * 294.29917 * 12 11 10 14 14 H 1.07994 * 119.99694 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00026 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99962 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00017 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46997 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47115 * 120.00333 * 17 15 13 20 20 H 1.48497 * 109.47346 * 240.00530 * 17 15 13 21 21 C 1.46901 * 111.26466 * 296.75144 * 11 10 9 22 22 C 1.47084 * 120.88219 * 4.99121 * 8 6 5 23 23 C 1.50697 * 109.47258 * 240.00266 * 2 1 3 24 24 N 1.29027 * 124.91673 * 299.69508 * 23 2 1 25 25 C 1.31781 * 117.12586 * 179.81140 * 24 23 2 26 26 C 1.33639 * 114.50045 * 0.47631 * 25 24 23 27 27 S 1.70981 * 124.91829 * 119.99952 * 23 2 1 28 28 H 1.09004 * 109.46842 * 59.99839 * 1 2 3 29 29 H 1.09000 * 109.47245 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47090 * 300.00199 * 1 2 3 31 31 H 1.08991 * 109.47430 * 54.99732 * 4 2 1 32 32 H 1.08996 * 109.47299 * 175.00414 * 4 2 1 33 33 H 0.96993 * 119.99802 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.63292 * 248.52284 * 9 8 6 35 35 H 1.09010 * 109.62750 * 9.10564 * 9 8 6 36 36 H 1.08993 * 109.65262 * 294.07950 * 10 9 8 37 37 H 1.09004 * 109.42335 * 173.94733 * 10 9 8 38 38 H 1.09006 * 109.47226 * 54.29410 * 12 11 10 39 39 H 1.08993 * 109.47661 * 174.29749 * 12 11 10 40 40 H 0.97002 * 119.99890 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.49775 * 303.14873 * 21 11 10 42 42 H 1.09004 * 109.49011 * 183.06211 * 21 11 10 43 43 H 1.09001 * 109.62837 * 350.89453 * 22 8 6 44 44 H 1.08994 * 109.62772 * 111.47645 * 22 8 6 45 45 H 1.07999 * 122.74968 * 180.22583 * 25 24 23 46 46 H 1.08000 * 126.03924 * 179.71761 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 0.0353 2.4424 6 6 1.9964 -0.4132 3.6659 7 8 2.5468 -1.4907 3.7858 8 7 1.7302 0.3327 4.7564 9 6 2.1877 -0.0886 6.0892 10 6 2.9300 1.0900 6.7389 11 7 2.0619 2.2751 6.7268 12 6 2.6623 3.3754 7.4928 13 6 2.7373 2.9917 8.9483 14 1 2.3756 2.0269 9.2717 15 6 3.2688 3.8721 9.8667 16 7 3.7097 5.0468 9.4727 17 14 3.3611 3.3969 11.6709 18 1 2.8029 2.0328 11.8527 19 1 4.7778 3.4149 12.1157 20 1 2.5764 4.3649 12.4786 21 6 1.7544 2.6962 5.3534 22 6 0.9692 1.5865 4.6461 23 6 2.0324 -0.7103 -1.2305 24 7 1.7844 -1.9417 -1.5253 25 6 2.2999 -2.4069 -2.6453 26 6 3.0313 -1.5214 -3.3286 27 16 3.0195 -0.0033 -2.4342 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6054 -1.7198 1.2951 32 1 3.1263 -0.7995 1.2056 33 1 1.1489 0.8594 2.3517 34 1 1.3290 -0.3662 6.7004 35 1 2.8624 -0.9394 5.9927 36 1 3.8419 1.3014 6.1807 37 1 3.1837 0.8356 7.7680 38 1 3.6661 3.5741 7.1173 39 1 2.0499 4.2704 7.3841 40 1 4.0833 5.6663 10.1190 41 1 2.6827 2.8852 4.8144 42 1 1.1555 3.6067 5.3777 43 1 0.8379 1.8438 3.5951 44 1 -0.0044 1.4669 5.1212 45 1 2.1474 -3.4219 -2.9814 46 1 3.5401 -1.7041 -4.2635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601595661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:55 Heat of formation + Delta-G solvation = 31.327923 kcal Electronic energy + Delta-G solvation = -26615.870390 eV Core-core repulsion = 22860.790618 eV Total energy + Delta-G solvation = -3755.079772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.42752 -39.99725 -37.79054 -36.40448 -34.40830 -33.21034 -32.33109 -30.67515 -29.83149 -28.31370 -26.80804 -25.81455 -25.15867 -23.21116 -22.44617 -22.04858 -20.74885 -19.86466 -19.39505 -18.34944 -17.84098 -16.49158 -16.22896 -15.86849 -15.75652 -15.21168 -15.00576 -14.68797 -14.46580 -14.44605 -14.04561 -13.90825 -13.77480 -13.64096 -13.50558 -13.21367 -12.71204 -12.24958 -12.17544 -12.01051 -11.94654 -11.72074 -11.48615 -11.29248 -11.13560 -10.84806 -10.73785 -10.60038 -10.51118 -10.04565 -9.96224 -9.85793 -9.80059 -9.31526 -9.26783 -9.15798 -8.48995 -8.31883 -7.32768 -6.06783 -4.08337 0.28352 0.93020 1.33089 2.42822 2.71673 3.29507 3.32141 3.37245 3.41995 3.63370 3.95419 4.36673 4.39695 4.45219 4.58182 4.77687 4.79181 4.93246 5.08134 5.20478 5.28109 5.30394 5.36522 5.40109 5.44099 5.51809 5.64223 5.68705 5.73859 5.83701 5.90344 5.94851 6.04623 6.18944 6.39485 6.42814 6.56687 6.68831 7.04844 7.21596 7.27777 7.33846 7.74430 7.99193 8.01688 8.12103 8.47351 8.68693 8.99412 9.56386 11.04075 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027871 B = 0.001925 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.369714 B =14545.226338 C =14824.083942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.025 4.025 3 H 0.096 0.904 4 C 0.155 3.845 5 N -0.750 5.750 6 C 0.709 3.291 7 O -0.594 6.594 8 N -0.625 5.625 9 C 0.133 3.867 10 C 0.051 3.949 11 N -0.535 5.535 12 C 0.193 3.807 13 C -0.508 4.508 14 H 0.065 0.935 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.040 3.960 22 C 0.119 3.881 23 C 0.058 3.942 24 N -0.466 5.466 25 C 0.041 3.959 26 C -0.262 4.262 27 S 0.125 5.875 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.395 0.605 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.097 0.903 38 H -0.009 1.009 39 H 0.031 0.969 40 H 0.261 0.739 41 H 0.026 0.974 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.177 0.823 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.118 -8.787 -26.314 28.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.048 4.048 3 H 0.115 0.885 4 C 0.028 3.972 5 N -0.409 5.409 6 C 0.410 3.590 7 O -0.472 6.472 8 N -0.362 5.362 9 C 0.011 3.989 10 C -0.079 4.079 11 N -0.260 5.260 12 C 0.069 3.931 13 C -0.547 4.547 14 H 0.083 0.917 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.089 4.089 22 C -0.005 4.005 23 C -0.220 4.220 24 N -0.180 5.180 25 C -0.110 4.110 26 C -0.401 4.401 27 S 0.380 5.620 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.232 0.768 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.043 0.957 37 H 0.115 0.885 38 H 0.009 0.991 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.194 0.806 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.917 -8.872 -25.740 27.666 hybrid contribution 0.606 -0.245 0.052 0.656 sum -4.311 -9.117 -25.687 27.596 Atomic orbital electron populations 1.21820 0.91995 1.03722 1.02315 1.20042 0.97728 0.98339 0.88655 0.88534 1.21042 0.99865 0.95326 0.80929 1.45201 1.62228 1.28886 1.04619 1.15768 0.79359 0.83617 0.80247 1.90900 1.49454 1.21543 1.85349 1.47405 1.58181 1.23789 1.06824 1.21835 0.99258 0.97522 0.80330 1.22458 0.93241 0.90629 1.01533 1.62077 1.46375 1.07616 1.09917 1.19731 0.92615 0.88122 0.92680 1.21186 1.39637 1.02211 0.91646 0.91682 1.24998 0.95455 0.94955 0.99240 1.69966 1.41710 1.07595 1.34506 0.86435 0.77571 0.78650 0.84732 1.19579 1.21133 1.21025 1.22385 0.98516 0.96836 0.91204 1.21767 0.95713 0.83811 0.99216 1.26813 1.00576 0.93467 1.01184 1.66206 1.23056 1.11533 1.17181 1.21850 0.97045 1.01652 0.90460 1.27127 1.09555 0.96240 1.07201 1.84133 1.46918 1.14921 1.16022 0.92117 0.91015 0.91345 0.90292 0.91702 0.76825 0.91122 0.89369 0.95734 0.88485 0.99132 0.95060 0.92952 0.95543 0.90129 0.91351 0.90575 0.80625 0.80509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.04 37.16 0.34 -0.61 16 2 C -0.03 -0.19 2.86 -91.77 -0.26 -0.45 16 3 H 0.10 0.58 8.12 -51.93 -0.42 0.16 16 4 C 0.15 1.64 5.04 -4.04 -0.02 1.62 16 5 N -0.75 -8.47 5.20 -65.23 -0.34 -8.81 16 6 C 0.71 11.03 8.31 -86.92 -0.72 10.31 16 7 O -0.59 -11.49 15.83 5.29 0.08 -11.40 16 8 N -0.62 -9.50 3.00 -177.91 -0.53 -10.03 16 9 C 0.13 2.22 6.61 -3.37 -0.02 2.19 16 10 C 0.05 0.97 5.47 -3.46 -0.02 0.95 16 11 N -0.53 -10.91 4.62 -235.46 -1.09 -12.00 16 12 C 0.19 4.86 4.72 -4.97 -0.02 4.83 16 13 C -0.51 -13.86 8.41 -34.44 -0.29 -14.15 16 14 H 0.07 1.75 7.12 -52.49 -0.37 1.38 16 15 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 17 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.04 0.65 5.62 -3.70 -0.02 0.63 16 22 C 0.12 1.53 6.59 -3.60 -0.02 1.51 16 23 C 0.06 0.50 5.91 -13.46 -0.08 0.42 16 24 N -0.47 -4.59 10.53 -11.86 -0.12 -4.72 16 25 C 0.04 0.32 11.35 -19.18 -0.22 0.10 16 26 C -0.26 -1.68 11.37 29.12 0.33 -1.35 16 27 S 0.13 0.87 23.17 -107.50 -2.49 -1.62 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.40 7.18 -51.93 -0.37 0.03 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.39 3.41 5.15 -40.82 -0.21 3.20 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.09 1.49 7.09 -51.92 -0.37 1.12 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 1.98 6.67 -51.93 -0.35 1.64 16 38 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 39 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 1.24 7.99 -51.93 -0.41 0.83 16 43 H 0.07 0.64 5.63 -51.93 -0.29 0.35 16 44 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -33.55 383.87 -11.12 -44.67 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.00 Total: -0.10 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -1.13 Total: 7.43 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: -1.35 Total: -61.05 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.49 Total: -1.62 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.55 -11.12 -44.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601595661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.999 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds