Wall clock time and date at job start Tue Mar 31 2020 21:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47302 * 2 1 4 4 C 1.52997 * 109.47123 * 120.00348 * 2 1 3 5 5 N 1.46508 * 109.46872 * 294.99818 * 4 2 1 6 6 C 1.34779 * 119.99789 * 180.02562 * 5 4 2 7 7 O 1.21585 * 119.99725 * 354.91638 * 6 5 4 8 8 N 1.34774 * 119.99826 * 174.92226 * 6 5 4 9 9 C 1.47076 * 120.88092 * 184.71253 * 8 6 5 10 10 C 1.53695 * 108.27629 * 128.74980 * 9 8 6 11 11 N 1.46904 * 109.25492 * 54.08761 * 10 9 8 12 12 C 1.46897 * 111.00218 * 172.60786 * 11 10 9 13 13 C 1.50706 * 109.47003 * 294.29917 * 12 11 10 14 14 H 1.07994 * 119.99694 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00026 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99962 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00017 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46997 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47115 * 120.00333 * 17 15 13 20 20 H 1.48497 * 109.47346 * 240.00530 * 17 15 13 21 21 C 1.46901 * 111.26466 * 296.75144 * 11 10 9 22 22 C 1.47084 * 120.88219 * 4.99121 * 8 6 5 23 23 C 1.50697 * 109.47258 * 240.00266 * 2 1 3 24 24 N 1.29027 * 124.91673 * 299.69508 * 23 2 1 25 25 C 1.31781 * 117.12586 * 179.81140 * 24 23 2 26 26 C 1.33639 * 114.50045 * 0.47631 * 25 24 23 27 27 S 1.70981 * 124.91829 * 119.99952 * 23 2 1 28 28 H 1.09004 * 109.46842 * 59.99839 * 1 2 3 29 29 H 1.09000 * 109.47245 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47090 * 300.00199 * 1 2 3 31 31 H 1.08991 * 109.47430 * 54.99732 * 4 2 1 32 32 H 1.08996 * 109.47299 * 175.00414 * 4 2 1 33 33 H 0.96993 * 119.99802 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.63292 * 248.52284 * 9 8 6 35 35 H 1.09010 * 109.62750 * 9.10564 * 9 8 6 36 36 H 1.08993 * 109.65262 * 294.07950 * 10 9 8 37 37 H 1.09004 * 109.42335 * 173.94733 * 10 9 8 38 38 H 1.09006 * 109.47226 * 54.29410 * 12 11 10 39 39 H 1.08993 * 109.47661 * 174.29749 * 12 11 10 40 40 H 0.97002 * 119.99890 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.49775 * 303.14873 * 21 11 10 42 42 H 1.09004 * 109.49011 * 183.06211 * 21 11 10 43 43 H 1.09001 * 109.62837 * 350.89453 * 22 8 6 44 44 H 1.08994 * 109.62772 * 111.47645 * 22 8 6 45 45 H 1.07999 * 122.74968 * 180.22583 * 25 24 23 46 46 H 1.08000 * 126.03924 * 179.71761 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 0.0353 2.4424 6 6 1.9964 -0.4132 3.6659 7 8 2.5468 -1.4907 3.7858 8 7 1.7302 0.3327 4.7564 9 6 2.1877 -0.0886 6.0892 10 6 2.9300 1.0900 6.7389 11 7 2.0619 2.2751 6.7268 12 6 2.6623 3.3754 7.4928 13 6 2.7373 2.9917 8.9483 14 1 2.3756 2.0269 9.2717 15 6 3.2688 3.8721 9.8667 16 7 3.7097 5.0468 9.4727 17 14 3.3611 3.3969 11.6709 18 1 2.8029 2.0328 11.8527 19 1 4.7778 3.4149 12.1157 20 1 2.5764 4.3649 12.4786 21 6 1.7544 2.6962 5.3534 22 6 0.9692 1.5865 4.6461 23 6 2.0324 -0.7103 -1.2305 24 7 1.7844 -1.9417 -1.5253 25 6 2.2999 -2.4069 -2.6453 26 6 3.0313 -1.5214 -3.3286 27 16 3.0195 -0.0033 -2.4342 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6054 -1.7198 1.2951 32 1 3.1263 -0.7995 1.2056 33 1 1.1489 0.8594 2.3517 34 1 1.3290 -0.3662 6.7004 35 1 2.8624 -0.9394 5.9927 36 1 3.8419 1.3014 6.1807 37 1 3.1837 0.8356 7.7680 38 1 3.6661 3.5741 7.1173 39 1 2.0499 4.2704 7.3841 40 1 4.0833 5.6663 10.1190 41 1 2.6827 2.8852 4.8144 42 1 1.1555 3.6067 5.3777 43 1 0.8379 1.8438 3.5951 44 1 -0.0044 1.4669 5.1212 45 1 2.1474 -3.4219 -2.9814 46 1 3.5401 -1.7041 -4.2635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601595661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:54 Heat of formation + Delta-G solvation = 7.664326 kcal Electronic energy + Delta-G solvation = -26616.896520 eV Core-core repulsion = 22860.790618 eV Total energy + Delta-G solvation = -3756.105902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52633 -40.71828 -39.17507 -37.32757 -35.97922 -34.51559 -33.94058 -31.98603 -30.47953 -29.92543 -27.77613 -27.04812 -26.19692 -24.53625 -23.92397 -23.01112 -22.16276 -20.78656 -20.29095 -19.27951 -18.73819 -18.48052 -17.43007 -16.83147 -16.75250 -16.46634 -16.10543 -15.93516 -15.74792 -15.39716 -15.37499 -15.23656 -14.91464 -14.62776 -14.56717 -14.14734 -14.03070 -13.68655 -13.50880 -13.07115 -12.80848 -12.72390 -12.59119 -12.48736 -12.40103 -12.34282 -12.29480 -12.16125 -12.06164 -11.73888 -11.38113 -11.17326 -10.61278 -10.59353 -10.37370 -10.28390 -9.85446 -9.59651 -9.01933 -8.19922 -6.29151 -0.26915 0.39803 0.79036 1.42365 1.43529 1.55437 1.56864 1.88740 2.08689 2.41486 2.81130 3.12684 3.17458 3.25441 3.71186 3.83561 3.96774 3.97119 4.07551 4.17399 4.27856 4.36641 4.40346 4.46393 4.56540 4.57408 4.66461 4.72512 4.74604 4.87120 4.87624 4.96794 5.00197 5.04551 5.17604 5.19201 5.24955 5.34963 5.41283 5.45554 5.65599 5.90996 6.05235 6.27476 6.60682 6.78573 6.86829 6.91883 7.40578 7.49541 8.91236 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027871 B = 0.001925 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.369714 B =14545.226338 C =14824.083942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.017 4.017 3 H 0.119 0.881 4 C 0.161 3.839 5 N -0.730 5.730 6 C 0.706 3.294 7 O -0.635 6.635 8 N -0.627 5.627 9 C 0.145 3.855 10 C 0.057 3.943 11 N -0.538 5.538 12 C 0.208 3.792 13 C -0.522 4.522 14 H 0.065 0.935 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.263 1.263 19 H -0.282 1.282 20 H -0.278 1.278 21 C 0.037 3.963 22 C 0.126 3.874 23 C 0.036 3.964 24 N -0.496 5.496 25 C 0.018 3.982 26 C -0.253 4.253 27 S 0.146 5.854 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.411 0.589 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.010 0.990 37 H 0.079 0.921 38 H -0.042 1.042 39 H 0.013 0.987 40 H 0.264 0.736 41 H 0.020 0.980 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.192 0.808 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.170 -8.737 -27.639 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.040 4.040 3 H 0.137 0.863 4 C 0.035 3.965 5 N -0.389 5.389 6 C 0.407 3.593 7 O -0.517 6.517 8 N -0.364 5.364 9 C 0.022 3.978 10 C -0.072 4.072 11 N -0.263 5.263 12 C 0.082 3.918 13 C -0.560 4.560 14 H 0.083 0.917 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.187 1.187 19 H -0.208 1.208 20 H -0.204 1.204 21 C -0.092 4.092 22 C 0.003 3.997 23 C -0.241 4.241 24 N -0.211 5.211 25 C -0.132 4.132 26 C -0.392 4.392 27 S 0.401 5.599 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.251 0.749 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.028 0.972 37 H 0.097 0.903 38 H -0.024 1.024 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.109 0.891 43 H 0.130 0.870 44 H 0.107 0.893 45 H 0.209 0.791 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.008 -8.802 -27.107 29.127 hybrid contribution 0.972 -0.261 0.344 1.064 sum -5.035 -9.063 -26.764 28.702 Atomic orbital electron populations 1.21797 0.91190 1.02937 1.03537 1.20026 0.98314 0.98819 0.86797 0.86313 1.20971 0.98867 0.94861 0.81844 1.45006 1.61343 1.29144 1.03412 1.15926 0.79049 0.83153 0.81154 1.90875 1.51277 1.23501 1.86042 1.47405 1.58295 1.24509 1.06196 1.21582 0.99167 0.95858 0.81226 1.22362 0.93030 0.91171 1.00623 1.61996 1.45534 1.06422 1.12334 1.19380 0.90694 0.89010 0.92701 1.21509 1.39405 1.02189 0.92889 0.91672 1.25886 0.95030 0.94862 1.03887 1.70083 1.42578 1.08687 1.36104 0.85359 0.77622 0.78678 0.79111 1.18657 1.20780 1.20417 1.22544 0.98927 0.98829 0.88937 1.21889 0.94890 0.81322 1.01566 1.26946 1.01489 0.93625 1.02081 1.66206 1.24065 1.12438 1.18343 1.22175 0.97780 1.02805 0.90417 1.27501 1.08476 0.95550 1.07714 1.84013 1.45845 1.14820 1.15207 0.90923 0.92812 0.90033 0.92412 0.93216 0.74940 0.90264 0.89848 0.97201 0.90277 1.02392 0.96926 0.92748 0.96187 0.89054 0.86989 0.89339 0.79131 0.77854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.04 71.98 0.65 -0.92 16 2 C -0.02 -0.24 2.86 -11.54 -0.03 -0.27 16 3 H 0.12 1.08 8.12 -2.39 -0.02 1.06 16 4 C 0.16 3.28 5.04 86.38 0.44 3.72 16 5 N -0.73 -15.08 5.20 -478.54 -2.49 -17.57 16 6 C 0.71 21.14 8.31 179.05 1.49 22.63 16 7 O -0.64 -24.59 15.83 -3.98 -0.06 -24.65 16 8 N -0.63 -18.11 3.00 -835.04 -2.51 -20.62 16 9 C 0.15 4.76 6.61 86.50 0.57 5.34 16 10 C 0.06 2.23 5.47 86.54 0.47 2.71 16 11 N -0.54 -22.01 4.62 -898.86 -4.15 -26.16 16 12 C 0.21 10.74 4.72 85.56 0.40 11.15 16 13 C -0.52 -28.86 8.41 25.60 0.22 -28.65 16 14 H 0.07 3.53 7.12 -2.91 -0.02 3.51 16 15 C 0.00 0.08 5.46 84.65 0.46 0.54 16 16 N -0.93 -55.39 13.29 21.45 0.28 -55.10 16 17 Si 0.97 43.84 29.54 68.60 2.03 45.86 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 C 0.04 1.15 5.62 86.38 0.49 1.63 16 22 C 0.13 2.89 6.59 86.35 0.57 3.46 16 23 C 0.04 0.59 5.91 88.52 0.52 1.11 16 24 N -0.50 -9.53 10.53 -191.45 -2.02 -11.54 16 25 C 0.02 0.27 11.35 83.66 0.95 1.22 16 26 C -0.25 -2.76 11.37 66.78 0.76 -2.00 16 27 S 0.15 1.76 23.17 -56.49 -1.31 0.45 16 28 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.70 7.18 -2.39 -0.02 0.68 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.41 5.68 5.15 -92.71 -0.48 5.20 16 34 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.08 2.84 7.09 -2.38 -0.02 2.82 16 36 H 0.01 0.40 8.14 -2.39 -0.02 0.39 16 37 H 0.08 3.33 6.67 -2.38 -0.02 3.31 16 38 H -0.04 -2.38 8.12 -2.38 -0.02 -2.40 16 39 H 0.01 0.69 7.97 -2.39 -0.02 0.67 16 40 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 41 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 2.67 7.99 -2.39 -0.02 2.65 16 43 H 0.11 1.60 5.63 -2.39 -0.01 1.59 16 44 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.19 1.90 8.06 -2.91 -0.02 1.87 16 46 H 0.20 0.95 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -74.79 383.87 -1.76 -76.55 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.51 Total: 11.12 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 7.95 Total: 21.66 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -10.88 Total: -130.99 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.06 Total: -24.65 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -1.31 Total: 0.45 kcal Total: -74.79 -1.76 -76.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601595661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.211 kcal (2) G-P(sol) polarization free energy of solvation -74.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds