Wall clock time and date at job start Tue Mar 31 2020 20:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35992 * 117.00023 * 2 1 4 4 C 1.38600 * 120.01147 * 0.02562 * 3 2 1 5 5 C 1.38814 * 120.01952 * 180.02562 * 4 3 2 6 6 N 1.40084 * 119.97859 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00146 * 34.08812 * 6 5 4 8 8 O 1.21285 * 119.99629 * 5.01499 * 7 6 5 9 9 C 1.50701 * 120.00099 * 185.01747 * 7 6 5 10 10 N 1.46893 * 109.47177 * 179.97438 * 9 7 6 11 11 C 1.46898 * 111.00287 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46723 * 325.00200 * 11 10 9 13 13 C 1.53008 * 109.47024 * 84.99900 * 11 10 9 14 14 C 1.50703 * 109.47440 * 204.99984 * 11 10 9 15 15 H 1.07997 * 119.99838 * 354.79338 * 14 11 10 16 16 C 1.37876 * 119.99860 * 174.78965 * 14 11 10 17 17 N 1.31508 * 120.00347 * 359.10992 * 16 14 11 18 18 Si 1.86796 * 119.99817 * 179.38415 * 16 14 11 19 19 H 1.48500 * 109.47383 * 264.73881 * 18 16 14 20 20 H 1.48504 * 109.47227 * 24.73573 * 18 16 14 21 21 H 1.48498 * 109.47416 * 144.73737 * 18 16 14 22 22 C 1.38812 * 120.04070 * 0.25451 * 5 4 3 23 23 C 1.38599 * 120.02210 * 359.48888 * 22 5 4 24 24 O 1.35997 * 120.01501 * 180.25502 * 23 22 5 25 25 C 1.42896 * 116.99717 * 0.25413 * 24 23 22 26 26 C 1.38988 * 120.00836 * 180.02562 * 3 2 1 27 27 O 1.36157 * 120.02195 * 359.97438 * 26 3 2 28 28 C 1.42904 * 116.99670 * 90.00199 * 27 26 3 29 29 H 1.09006 * 109.46772 * 59.99976 * 1 2 3 30 30 H 1.09000 * 109.47285 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47162 * 300.00203 * 1 2 3 32 32 H 1.07998 * 119.99005 * 0.04241 * 4 3 2 33 33 H 0.97006 * 119.99860 * 214.08902 * 6 5 4 34 34 H 1.09001 * 109.46892 * 59.99717 * 9 7 6 35 35 H 1.09002 * 109.47085 * 299.99715 * 9 7 6 36 36 H 1.00906 * 111.00214 * 56.04380 * 10 9 7 37 37 H 1.09001 * 109.46686 * 176.89052 * 13 11 10 38 38 H 1.08996 * 109.47002 * 296.88467 * 13 11 10 39 39 H 1.08995 * 109.46731 * 56.88819 * 13 11 10 40 40 H 0.97004 * 120.00209 * 180.27360 * 17 16 14 41 41 H 1.07999 * 119.99433 * 179.74730 * 22 5 4 42 42 H 1.08997 * 109.47427 * 179.97438 * 25 24 23 43 43 H 1.08997 * 109.47606 * 299.99993 * 25 24 23 44 44 H 1.09012 * 109.46890 * 60.00257 * 25 24 23 45 45 H 1.08995 * 109.47197 * 299.99776 * 28 27 26 46 46 H 1.08995 * 109.46969 * 60.00151 * 28 27 26 47 47 H 1.09000 * 109.46814 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2917 2.3742 0.0005 5 6 1.9218 3.6112 0.0000 6 7 1.1582 4.7856 0.0000 7 6 -0.0193 4.8239 0.6546 8 8 -0.3751 3.8734 1.3186 9 6 -0.8937 6.0477 0.5615 10 7 -2.1113 5.8412 1.3569 11 6 -2.9896 7.0168 1.2900 12 1 -2.3830 7.9212 1.2424 13 6 -3.8689 6.9262 0.0411 14 6 -3.8631 7.0618 2.5172 15 1 -3.8351 6.2509 3.2300 16 6 -4.6979 8.1383 2.7301 17 7 -4.7191 9.1339 1.8713 18 14 -5.7933 8.1859 4.2424 19 1 -7.1411 7.6690 3.8940 20 1 -5.2001 7.3413 5.3102 21 1 -5.9096 9.5853 4.7256 22 6 3.3079 3.6850 -0.0064 23 6 4.0642 2.5236 -0.0016 24 8 5.4223 2.5961 -0.0026 25 6 6.0021 3.9021 -0.0032 26 6 3.4343 1.2846 -0.0005 27 8 4.1765 0.1431 -0.0005 28 6 4.5297 -0.4010 -1.2739 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2132 2.3178 0.0016 33 1 1.4770 5.5714 -0.4712 34 1 -1.1654 6.2218 -0.4797 35 1 -0.3512 6.9120 0.9448 36 1 -1.8842 5.6138 2.3134 37 1 -4.5587 7.7699 0.0205 38 1 -3.2398 6.9495 -0.8486 39 1 -4.4346 5.9947 0.0620 40 1 -5.3035 9.8931 2.0231 41 1 3.7973 4.6477 -0.0110 42 1 7.0888 3.8173 -0.0035 43 1 5.6793 4.4427 -0.8929 44 1 5.6806 4.4428 0.8872 45 1 3.6237 -0.6407 -1.8305 46 1 5.1159 0.3295 -1.8312 47 1 5.1183 -1.3072 -1.1311 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602866941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:33 Heat of formation + Delta-G solvation = -106.545660 kcal Electronic energy + Delta-G solvation = -29393.122884 eV Core-core repulsion = 25157.018843 eV Total energy + Delta-G solvation = -4236.104041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16096 -39.81074 -39.16980 -37.81912 -36.85308 -35.61108 -34.04455 -32.55608 -30.11811 -29.85535 -29.03604 -28.03332 -27.25813 -26.59698 -25.55311 -24.77915 -22.56580 -22.28417 -20.54372 -19.86302 -19.02751 -17.84071 -17.65126 -17.02138 -16.61307 -16.42020 -16.19036 -16.02541 -15.69098 -15.46673 -15.12645 -14.88403 -14.70747 -14.61693 -14.24773 -13.68359 -13.47576 -13.36000 -13.14738 -12.78987 -12.55636 -12.40916 -12.05132 -11.95910 -11.78340 -11.70152 -11.43146 -11.38701 -11.25564 -10.98130 -10.76304 -10.49002 -10.28654 -10.12801 -10.05779 -9.76280 -9.62335 -8.92872 -8.54531 -8.36570 -8.02106 -7.42682 -6.10862 -4.15871 0.94119 1.19227 2.57345 2.66154 2.93181 3.27143 3.33633 3.34047 3.38414 3.45031 3.82184 4.36317 4.67961 4.72394 4.79771 4.85776 4.96729 5.00480 5.06627 5.15554 5.16334 5.20432 5.22358 5.24815 5.26778 5.28820 5.37343 5.48688 5.55221 5.69539 5.74576 5.96338 6.04401 6.13316 6.46612 6.71717 6.86157 7.00428 7.03227 7.06901 7.24772 7.35778 7.56861 7.72297 7.76289 8.11759 8.17418 8.23078 8.54996 8.94531 9.50650 10.97248 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.002253 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.336468 B =12425.322395 C =13242.942207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.302 6.302 3 C 0.170 3.830 4 C -0.236 4.236 5 C 0.234 3.766 6 N -0.682 5.682 7 C 0.513 3.487 8 O -0.498 6.498 9 C 0.045 3.955 10 N -0.673 5.673 11 C 0.212 3.788 12 H 0.008 0.992 13 C -0.122 4.122 14 C -0.519 4.519 15 H 0.062 0.938 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.273 1.273 21 H -0.287 1.287 22 C -0.266 4.266 23 C 0.167 3.833 24 O -0.302 6.302 25 C 0.025 3.975 26 C 0.005 3.995 27 O -0.311 6.311 28 C 0.035 3.965 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.152 0.848 33 H 0.412 0.588 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.343 0.657 37 H 0.073 0.927 38 H 0.005 0.995 39 H 0.034 0.966 40 H 0.262 0.738 41 H 0.138 0.862 42 H 0.101 0.899 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.043 0.957 46 H 0.042 0.958 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.978 -11.618 -9.370 24.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.214 6.214 3 C 0.122 3.878 4 C -0.257 4.257 5 C 0.138 3.862 6 N -0.329 5.329 7 C 0.301 3.699 8 O -0.370 6.370 9 C -0.088 4.088 10 N -0.306 5.306 11 C 0.105 3.895 12 H 0.025 0.975 13 C -0.181 4.181 14 C -0.558 4.558 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.198 1.198 21 H -0.213 1.213 22 C -0.288 4.288 23 C 0.120 3.880 24 O -0.214 6.214 25 C -0.071 4.071 26 C -0.041 4.041 27 O -0.227 6.227 28 C -0.060 4.060 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.169 0.831 33 H 0.248 0.752 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.161 0.839 37 H 0.092 0.908 38 H 0.024 0.976 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.155 0.845 42 H 0.119 0.881 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 19.482 -12.859 -9.244 25.107 hybrid contribution -0.297 1.772 0.788 1.962 sum 19.185 -11.086 -8.456 23.717 Atomic orbital electron populations 1.23185 0.77529 1.04049 1.02396 1.86120 1.21897 1.25576 1.87853 1.18740 0.90301 0.84911 0.93814 1.21107 1.01717 0.90004 1.12918 1.17132 0.89209 0.86203 0.93702 1.43836 1.21513 1.13452 1.54059 1.21409 0.80146 0.90599 0.77703 1.90700 1.70951 1.37336 1.37978 1.21832 0.92435 0.92239 1.02258 1.60553 1.12238 1.41422 1.16428 1.19172 0.90206 0.85076 0.95086 0.97485 1.21698 0.99792 1.01383 0.95217 1.21236 1.23278 1.05106 1.06149 0.91953 1.24920 0.97010 0.95306 0.96738 1.69921 1.38839 1.08352 1.35850 0.86486 0.80879 0.77193 0.82893 1.20613 1.19788 1.21252 1.20681 0.92633 0.97915 1.17528 1.18558 0.82683 0.92095 0.94642 1.86155 1.16421 1.30683 1.88185 1.23129 0.99149 0.83130 1.01641 1.16858 0.86309 0.84686 1.16259 1.86198 1.70162 1.37804 1.28526 1.22961 0.99424 0.98317 0.85324 0.92471 0.88003 0.91544 0.83082 0.75168 0.88377 0.92846 0.83867 0.90775 0.97581 0.94634 0.92866 0.84471 0.88057 0.92481 0.92319 0.93857 0.93952 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.24 16 2 O -0.30 -4.05 10.27 -34.39 -0.35 -4.40 16 3 C 0.17 2.39 6.69 -39.17 -0.26 2.13 16 4 C -0.24 -3.33 7.64 -39.23 -0.30 -3.63 16 5 C 0.23 2.98 6.27 -83.66 -0.52 2.46 16 6 N -0.68 -7.95 5.34 -9.85 -0.05 -8.00 16 7 C 0.51 7.86 7.60 -10.99 -0.08 7.77 16 8 O -0.50 -9.37 13.93 5.55 0.08 -9.29 16 9 C 0.05 0.73 5.97 -4.98 -0.03 0.70 16 10 N -0.67 -14.14 5.93 -109.22 -0.65 -14.78 16 11 C 0.21 5.15 2.50 -68.86 -0.17 4.98 16 12 H 0.01 0.19 7.80 -51.93 -0.40 -0.21 16 13 C -0.12 -2.90 9.26 37.16 0.34 -2.56 16 14 C -0.52 -14.01 8.50 -34.44 -0.29 -14.31 16 15 H 0.06 1.69 7.67 -52.49 -0.40 1.29 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 17 N -0.89 -24.87 11.74 55.43 0.65 -24.22 16 18 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 22 C -0.27 -2.94 8.95 -39.24 -0.35 -3.29 16 23 C 0.17 2.07 6.69 -39.17 -0.26 1.81 16 24 O -0.30 -3.33 10.27 -34.41 -0.35 -3.69 16 25 C 0.02 0.16 9.81 101.05 0.99 1.15 16 26 C 0.00 0.07 5.75 -39.03 -0.22 -0.16 16 27 O -0.31 -4.33 9.98 -45.58 -0.45 -4.78 16 28 C 0.03 0.35 11.14 101.05 1.13 1.47 16 29 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.77 7.66 -51.93 -0.40 0.37 16 32 H 0.15 2.28 4.69 -52.49 -0.25 2.03 16 33 H 0.41 3.31 8.82 -40.82 -0.36 2.95 16 34 H 0.10 1.46 7.49 -51.93 -0.39 1.08 16 35 H 0.05 0.80 8.05 -51.93 -0.42 0.38 16 36 H 0.34 7.45 7.95 -39.29 -0.31 7.14 16 37 H 0.07 1.91 6.47 -51.93 -0.34 1.58 16 38 H 0.01 0.11 7.53 -51.93 -0.39 -0.28 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.14 1.12 6.29 -52.49 -0.33 0.79 16 42 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 44 H 0.06 0.36 7.67 -51.92 -0.40 -0.04 16 45 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 390.76 15.07 5.89 5.89 Total: -1.00 -33.18 390.76 -6.26 -39.44 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.85 Total: 6.43 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 0.86 Total: 1.36 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.05 Total: -47.01 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -1.08 Total: -22.17 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.18 -6.26 -39.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602866941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.102 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds