Wall clock time and date at job start Tue Mar 31 2020 20:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35992 * 117.00023 * 2 1 4 4 C 1.38600 * 120.01147 * 0.02562 * 3 2 1 5 5 C 1.38814 * 120.01952 * 180.02562 * 4 3 2 6 6 N 1.40084 * 119.97859 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00146 * 34.08812 * 6 5 4 8 8 O 1.21285 * 119.99629 * 5.01499 * 7 6 5 9 9 C 1.50701 * 120.00099 * 185.01747 * 7 6 5 10 10 N 1.46893 * 109.47177 * 179.97438 * 9 7 6 11 11 C 1.46898 * 111.00287 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46723 * 325.00200 * 11 10 9 13 13 C 1.53008 * 109.47024 * 84.99900 * 11 10 9 14 14 C 1.50703 * 109.47440 * 204.99984 * 11 10 9 15 15 H 1.07997 * 119.99838 * 354.79338 * 14 11 10 16 16 C 1.37876 * 119.99860 * 174.78965 * 14 11 10 17 17 N 1.31508 * 120.00347 * 359.10992 * 16 14 11 18 18 Si 1.86796 * 119.99817 * 179.38415 * 16 14 11 19 19 H 1.48500 * 109.47383 * 264.73881 * 18 16 14 20 20 H 1.48504 * 109.47227 * 24.73573 * 18 16 14 21 21 H 1.48498 * 109.47416 * 144.73737 * 18 16 14 22 22 C 1.38812 * 120.04070 * 0.25451 * 5 4 3 23 23 C 1.38599 * 120.02210 * 359.48888 * 22 5 4 24 24 O 1.35997 * 120.01501 * 180.25502 * 23 22 5 25 25 C 1.42896 * 116.99717 * 0.25413 * 24 23 22 26 26 C 1.38988 * 120.00836 * 180.02562 * 3 2 1 27 27 O 1.36157 * 120.02195 * 359.97438 * 26 3 2 28 28 C 1.42904 * 116.99670 * 90.00199 * 27 26 3 29 29 H 1.09006 * 109.46772 * 59.99976 * 1 2 3 30 30 H 1.09000 * 109.47285 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47162 * 300.00203 * 1 2 3 32 32 H 1.07998 * 119.99005 * 0.04241 * 4 3 2 33 33 H 0.97006 * 119.99860 * 214.08902 * 6 5 4 34 34 H 1.09001 * 109.46892 * 59.99717 * 9 7 6 35 35 H 1.09002 * 109.47085 * 299.99715 * 9 7 6 36 36 H 1.00906 * 111.00214 * 56.04380 * 10 9 7 37 37 H 1.09001 * 109.46686 * 176.89052 * 13 11 10 38 38 H 1.08996 * 109.47002 * 296.88467 * 13 11 10 39 39 H 1.08995 * 109.46731 * 56.88819 * 13 11 10 40 40 H 0.97004 * 120.00209 * 180.27360 * 17 16 14 41 41 H 1.07999 * 119.99433 * 179.74730 * 22 5 4 42 42 H 1.08997 * 109.47427 * 179.97438 * 25 24 23 43 43 H 1.08997 * 109.47606 * 299.99993 * 25 24 23 44 44 H 1.09012 * 109.46890 * 60.00257 * 25 24 23 45 45 H 1.08995 * 109.47197 * 299.99776 * 28 27 26 46 46 H 1.08995 * 109.46969 * 60.00151 * 28 27 26 47 47 H 1.09000 * 109.46814 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2917 2.3742 0.0005 5 6 1.9218 3.6112 0.0000 6 7 1.1582 4.7856 0.0000 7 6 -0.0193 4.8239 0.6546 8 8 -0.3751 3.8734 1.3186 9 6 -0.8937 6.0477 0.5615 10 7 -2.1113 5.8412 1.3569 11 6 -2.9896 7.0168 1.2900 12 1 -2.3830 7.9212 1.2424 13 6 -3.8689 6.9262 0.0411 14 6 -3.8631 7.0618 2.5172 15 1 -3.8351 6.2509 3.2300 16 6 -4.6979 8.1383 2.7301 17 7 -4.7191 9.1339 1.8713 18 14 -5.7933 8.1859 4.2424 19 1 -7.1411 7.6690 3.8940 20 1 -5.2001 7.3413 5.3102 21 1 -5.9096 9.5853 4.7256 22 6 3.3079 3.6850 -0.0064 23 6 4.0642 2.5236 -0.0016 24 8 5.4223 2.5961 -0.0026 25 6 6.0021 3.9021 -0.0032 26 6 3.4343 1.2846 -0.0005 27 8 4.1765 0.1431 -0.0005 28 6 4.5297 -0.4010 -1.2739 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2132 2.3178 0.0016 33 1 1.4770 5.5714 -0.4712 34 1 -1.1654 6.2218 -0.4797 35 1 -0.3512 6.9120 0.9448 36 1 -1.8842 5.6138 2.3134 37 1 -4.5587 7.7699 0.0205 38 1 -3.2398 6.9495 -0.8486 39 1 -4.4346 5.9947 0.0620 40 1 -5.3035 9.8931 2.0231 41 1 3.7973 4.6477 -0.0110 42 1 7.0888 3.8173 -0.0035 43 1 5.6793 4.4427 -0.8929 44 1 5.6806 4.4428 0.8872 45 1 3.6237 -0.6407 -1.8305 46 1 5.1159 0.3295 -1.8312 47 1 5.1183 -1.3072 -1.1311 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602866941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:33 Heat of formation + Delta-G solvation = -130.728746 kcal Electronic energy + Delta-G solvation = -29394.171542 eV Core-core repulsion = 25157.018843 eV Total energy + Delta-G solvation = -4237.152698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.13653 -40.93324 -40.04254 -38.75118 -38.00885 -37.23139 -35.10853 -34.45227 -31.44562 -30.78452 -30.40253 -28.78622 -28.02156 -27.80999 -27.21088 -26.26662 -23.61811 -23.22604 -21.86967 -21.48777 -19.99127 -19.10281 -18.66225 -18.27456 -17.78839 -17.41840 -17.22285 -17.16518 -16.91357 -16.49673 -16.42724 -16.00346 -15.75646 -15.69598 -15.49024 -15.21986 -14.73711 -14.48187 -14.32930 -14.09576 -13.68104 -13.49303 -13.26610 -13.16371 -12.84569 -12.79068 -12.66899 -12.53190 -12.46623 -12.35041 -12.28660 -12.24573 -12.16197 -11.99612 -11.06763 -10.95297 -10.86453 -10.68374 -10.57544 -9.30492 -9.11604 -8.99051 -8.16785 -6.28044 -0.05447 0.23832 1.41222 1.43164 1.47648 1.53140 1.70454 1.92635 2.38950 2.41652 2.63883 2.88892 3.14632 3.57191 3.69684 3.89970 3.96479 4.04594 4.17662 4.27405 4.29669 4.36395 4.40781 4.42640 4.45444 4.49613 4.51019 4.52093 4.66730 4.76681 4.79748 4.83662 5.03544 5.07723 5.09501 5.13318 5.18340 5.40824 5.48163 5.64989 5.82509 5.98805 6.16395 6.18682 6.31605 6.40257 6.64688 6.72526 6.93001 7.07291 7.42200 8.90493 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.002253 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.336468 B =12425.322395 C =13242.942207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.316 6.316 3 C 0.156 3.844 4 C -0.249 4.249 5 C 0.221 3.779 6 N -0.659 5.659 7 C 0.520 3.480 8 O -0.538 6.538 9 C 0.046 3.954 10 N -0.681 5.681 11 C 0.218 3.782 12 H -0.012 1.012 13 C -0.112 4.112 14 C -0.539 4.539 15 H 0.053 0.947 16 C 0.018 3.982 17 N -0.915 5.915 18 Si 0.957 3.043 19 H -0.277 1.277 20 H -0.272 1.272 21 H -0.281 1.281 22 C -0.250 4.250 23 C 0.166 3.834 24 O -0.316 6.316 25 C 0.013 3.987 26 C -0.011 4.011 27 O -0.333 6.333 28 C 0.032 3.968 29 H 0.062 0.938 30 H 0.129 0.871 31 H 0.050 0.950 32 H 0.137 0.863 33 H 0.432 0.568 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.336 0.664 37 H 0.049 0.951 38 H 0.033 0.967 39 H 0.027 0.973 40 H 0.264 0.736 41 H 0.171 0.829 42 H 0.122 0.878 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.042 0.958 46 H 0.049 0.951 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.559 -11.111 -9.934 26.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.228 6.228 3 C 0.108 3.892 4 C -0.270 4.270 5 C 0.126 3.874 6 N -0.308 5.308 7 C 0.309 3.691 8 O -0.413 6.413 9 C -0.086 4.086 10 N -0.313 5.313 11 C 0.110 3.890 12 H 0.006 0.994 13 C -0.171 4.171 14 C -0.578 4.578 15 H 0.071 0.929 16 C -0.182 4.182 17 N -0.554 5.554 18 Si 0.783 3.217 19 H -0.203 1.203 20 H -0.196 1.196 21 H -0.206 1.206 22 C -0.271 4.271 23 C 0.118 3.882 24 O -0.229 6.229 25 C -0.081 4.081 26 C -0.057 4.057 27 O -0.250 6.250 28 C -0.062 4.062 29 H 0.080 0.920 30 H 0.147 0.853 31 H 0.069 0.931 32 H 0.155 0.845 33 H 0.272 0.728 34 H 0.133 0.867 35 H 0.091 0.909 36 H 0.153 0.847 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.188 0.812 42 H 0.140 0.860 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 21.110 -12.332 -9.849 26.358 hybrid contribution -0.643 1.580 0.908 1.932 sum 20.467 -10.753 -8.942 24.789 Atomic orbital electron populations 1.23319 0.76385 1.05624 1.01833 1.86092 1.23109 1.25670 1.87967 1.18881 0.90694 0.85056 0.94568 1.21066 1.01115 0.90907 1.13945 1.17234 0.89979 0.85837 0.94396 1.43484 1.20154 1.13986 1.53143 1.21157 0.80818 0.89601 0.77523 1.90702 1.72106 1.38495 1.39992 1.21880 0.91109 0.93324 1.02301 1.60411 1.14538 1.39874 1.16495 1.18961 0.90281 0.85412 0.94371 0.99412 1.21535 0.99547 0.99775 0.96239 1.21547 1.24092 1.04981 1.07152 0.92898 1.25631 0.98188 0.95049 0.99313 1.70013 1.39445 1.08738 1.37158 0.85558 0.79097 0.77308 0.79747 1.20300 1.19619 1.20610 1.20897 0.91662 0.99001 1.15515 1.18620 0.83592 0.91820 0.94120 1.86152 1.15489 1.33404 1.87844 1.23489 1.00266 0.81554 1.02789 1.17158 0.86437 0.85496 1.16628 1.86134 1.70199 1.38111 1.30568 1.23131 0.99772 0.99181 0.84147 0.91982 0.85337 0.93142 0.84548 0.72805 0.86719 0.90944 0.84667 0.93196 0.94802 0.95380 0.92720 0.81173 0.85953 0.90700 0.91652 0.93918 0.93218 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.81 113.37 1.11 1.60 16 2 O -0.32 -8.68 10.27 -79.43 -0.82 -9.49 16 3 C 0.16 4.44 6.69 22.54 0.15 4.60 16 4 C -0.25 -7.08 7.64 22.49 0.17 -6.90 16 5 C 0.22 5.35 6.27 38.10 0.24 5.59 16 6 N -0.66 -14.07 5.34 -303.47 -1.62 -15.69 16 7 C 0.52 15.38 7.60 87.66 0.67 16.05 16 8 O -0.54 -20.37 13.93 -3.05 -0.04 -20.41 16 9 C 0.05 1.42 5.97 85.56 0.51 1.93 16 10 N -0.68 -28.44 5.93 -499.46 -2.96 -31.40 16 11 C 0.22 10.60 2.50 44.17 0.11 10.71 16 12 H -0.01 -0.61 7.80 -2.39 -0.02 -0.62 16 13 C -0.11 -5.29 9.26 71.98 0.67 -4.62 16 14 C -0.54 -29.35 8.50 25.60 0.22 -29.13 16 15 H 0.05 2.91 7.67 -2.91 -0.02 2.89 16 16 C 0.02 0.98 5.30 84.66 0.45 1.42 16 17 N -0.91 -51.15 11.74 21.45 0.25 -50.90 16 18 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 C -0.25 -4.94 8.95 22.49 0.20 -4.73 16 23 C 0.17 3.86 6.69 22.54 0.15 4.01 16 24 O -0.32 -6.34 10.27 -79.48 -0.82 -7.15 16 25 C 0.01 0.13 9.81 113.37 1.11 1.24 16 26 C -0.01 -0.32 5.75 22.63 0.13 -0.19 16 27 O -0.33 -9.22 9.98 -71.12 -0.71 -9.92 16 28 C 0.03 0.61 11.14 113.37 1.26 1.88 16 29 H 0.06 1.25 7.66 -2.38 -0.02 1.23 16 30 H 0.13 1.97 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.24 7.66 -2.39 -0.02 1.22 16 32 H 0.14 4.26 4.69 -2.91 -0.01 4.24 16 33 H 0.43 5.59 8.82 -92.70 -0.82 4.77 16 34 H 0.11 3.15 7.49 -2.39 -0.02 3.13 16 35 H 0.07 2.00 8.05 -2.39 -0.02 1.99 16 36 H 0.34 14.74 7.95 -89.69 -0.71 14.03 16 37 H 0.05 2.58 6.47 -2.39 -0.02 2.56 16 38 H 0.03 1.35 7.53 -2.39 -0.02 1.33 16 39 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 41 H 0.17 2.11 6.29 -2.91 -0.02 2.09 16 42 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 0.50 7.65 -2.39 -0.02 0.48 16 44 H 0.06 0.58 7.67 -2.38 -0.02 0.57 16 45 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -72.57 390.76 1.95 -70.62 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -0.51 Total: 25.64 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 7.15 Total: 3.45 kcal Atomic # 7 Polarization: -93.66 SS G_CDS: -4.33 Total: -97.99 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -2.38 Total: -46.98 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -72.57 1.95 -70.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602866941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.112 kcal (2) G-P(sol) polarization free energy of solvation -72.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds