Wall clock time and date at job start Tue Mar 31 2020 21:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47430 * 2 1 4 4 C 1.50700 * 109.46916 * 239.99957 * 2 1 3 5 5 O 1.21277 * 120.00036 * 270.45205 * 4 2 1 6 6 N 1.34778 * 119.99760 * 90.44794 * 4 2 1 7 7 C 1.46497 * 120.00466 * 354.81743 * 6 4 2 8 8 C 1.46504 * 119.99779 * 174.81507 * 6 4 2 9 9 C 1.50707 * 109.46900 * 90.00138 * 8 6 4 10 10 H 1.07993 * 119.99965 * 359.97438 * 9 8 6 11 11 C 1.37875 * 119.99794 * 179.97438 * 9 8 6 12 12 N 1.31512 * 120.00105 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99990 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46884 * 60.00260 * 13 11 9 15 15 H 1.48496 * 109.47567 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47612 * 300.00604 * 13 11 9 17 17 N 1.46902 * 109.47264 * 120.00219 * 2 1 3 18 18 C 1.46647 * 110.99465 * 174.87739 * 17 2 1 19 19 C 1.50618 * 110.48727 * 176.00758 * 18 17 2 20 20 C 1.38739 * 118.43451 * 162.50532 * 19 18 17 21 21 C 1.38017 * 120.37468 * 179.55703 * 20 19 18 22 22 C 1.38265 * 119.87329 * 0.02562 * 21 20 19 23 23 C 1.38032 * 119.82594 * 0.07504 * 22 21 20 24 24 C 1.37834 * 121.84355 * 342.22200 * 19 18 17 25 25 C 1.50718 * 121.65386 * 0.77047 * 24 19 18 26 26 F 1.39907 * 109.38778 * 103.04005 * 25 24 19 27 27 F 1.39902 * 109.39179 * 222.74296 * 25 24 19 28 28 C 1.47159 * 111.00057 * 297.85191 * 17 2 1 29 29 H 1.09003 * 109.46798 * 305.56301 * 1 2 3 30 30 H 1.08993 * 109.46921 * 65.56476 * 1 2 3 31 31 H 1.08998 * 109.46662 * 185.56661 * 1 2 3 32 32 H 1.09001 * 109.47190 * 94.60618 * 7 6 4 33 33 H 1.08996 * 109.47478 * 214.61504 * 7 6 4 34 34 H 1.09004 * 109.46465 * 334.61066 * 7 6 4 35 35 H 1.08994 * 109.47102 * 209.99921 * 8 6 4 36 36 H 1.08994 * 109.47080 * 330.00238 * 8 6 4 37 37 H 0.97000 * 119.99821 * 179.97438 * 12 11 9 38 38 H 1.08998 * 109.29741 * 55.73062 * 18 17 2 39 39 H 1.09001 * 109.26112 * 296.25100 * 18 17 2 40 40 H 1.07994 * 119.81430 * 359.53417 * 20 19 18 41 41 H 1.07997 * 120.06426 * 180.02562 * 21 20 19 42 42 H 1.07995 * 120.08511 * 180.02562 * 22 21 20 43 43 H 1.07997 * 119.82747 * 180.02562 * 23 22 21 44 44 H 1.09007 * 109.62879 * 45.64108 * 28 17 2 45 45 H 1.08997 * 109.79424 * 285.15717 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.2266 -1.9072 -1.2029 6 7 2.2655 -0.0157 -2.3616 7 6 1.9242 1.4072 -2.4310 8 6 2.8605 -0.6837 -3.5219 9 6 1.7669 -1.2470 -4.3926 10 1 0.7324 -1.1205 -4.1097 11 6 2.0873 -1.9238 -5.5503 12 7 3.3471 -2.0783 -5.8945 13 14 0.7319 -2.6227 -6.6291 14 1 -0.1512 -1.5214 -7.0901 15 1 1.3348 -3.2996 -7.8052 16 1 -0.0657 -3.6031 -5.8493 17 7 2.0198 -0.6925 1.1994 18 6 3.4806 -0.8188 1.1736 19 6 3.9785 -1.4422 2.4511 20 6 5.2590 -1.9757 2.4705 21 6 5.7591 -2.5484 3.6224 22 6 4.9803 -2.5919 4.7640 23 6 3.7052 -2.0634 4.7458 24 6 3.2016 -1.4885 3.5887 25 6 1.8011 -0.9320 3.6133 26 9 0.8819 -1.9845 3.5451 27 9 1.6042 -0.2220 4.8026 28 6 1.5904 0.0038 2.4227 29 1 -0.3633 0.5977 0.8360 30 1 -0.3633 0.4251 -0.9356 31 1 -0.3632 -1.0228 0.0997 32 1 2.8026 2.0040 -2.1851 33 1 1.5892 1.6518 -3.4389 34 1 1.1267 1.6245 -1.7204 35 1 3.4463 0.0355 -4.0942 36 1 3.5080 -1.4923 -3.1831 37 1 3.5725 -2.5548 -6.7088 38 1 3.9255 0.1695 1.0583 39 1 3.7725 -1.4447 0.3303 40 1 5.8679 -1.9430 1.5792 41 1 6.7567 -2.9618 3.6320 42 1 5.3683 -3.0389 5.6674 43 1 3.0971 -2.0970 5.6376 44 1 0.5350 0.2647 2.3442 45 1 2.1821 0.9089 2.5591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610989965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:18 Heat of formation + Delta-G solvation = -85.654720 kcal Electronic energy + Delta-G solvation = -30390.812438 eV Core-core repulsion = 26044.526781 eV Total energy + Delta-G solvation = -4346.285658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.06598 -46.99372 -40.35420 -39.22697 -37.11494 -34.84116 -33.16928 -32.43949 -32.12631 -30.16613 -29.22403 -27.82766 -25.99647 -25.00966 -24.35405 -23.41394 -22.37501 -21.66061 -20.09246 -18.51299 -17.83450 -17.42707 -17.07585 -16.60863 -16.50829 -16.01050 -15.60833 -15.21041 -15.06150 -14.54793 -14.48965 -14.25303 -14.11081 -13.88444 -13.86612 -13.35892 -13.32311 -13.02257 -12.76675 -12.76349 -12.63555 -12.31760 -12.18204 -12.02486 -11.93258 -11.71184 -11.56278 -11.45166 -11.21627 -11.17391 -10.90821 -10.65531 -10.59212 -10.17207 -9.66615 -9.20167 -9.05617 -8.89160 -8.44964 -8.42415 -7.69755 -6.06170 -4.10731 0.96559 1.14427 3.07712 3.31251 3.35440 3.36147 3.42877 3.44085 3.58535 3.92139 3.95275 4.22266 4.43559 4.49020 4.67235 4.80607 4.84916 4.88207 5.06297 5.12345 5.14377 5.19227 5.28193 5.28764 5.32141 5.37458 5.51968 5.53743 5.66983 5.74731 5.76449 5.82179 5.84349 6.11015 6.13317 6.22820 6.28082 6.29189 6.65044 6.70091 6.75843 7.02413 7.36944 7.48537 7.89890 8.20372 8.33874 8.87264 9.03777 9.54469 11.01936 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.003152 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.546076 B = 8880.490446 C = 9622.376062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.065 3.935 3 H 0.062 0.938 4 C 0.507 3.493 5 O -0.515 6.515 6 N -0.603 5.603 7 C 0.080 3.920 8 C 0.248 3.752 9 C -0.526 4.526 10 H 0.057 0.943 11 C 0.062 3.938 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.502 5.502 18 C 0.076 3.924 19 C -0.030 4.030 20 C -0.119 4.119 21 C -0.095 4.095 22 C -0.129 4.129 23 C -0.085 4.085 24 C -0.148 4.148 25 C 0.349 3.651 26 F -0.182 7.182 27 F -0.196 7.196 28 C 0.011 3.989 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.032 0.968 36 H 0.042 0.958 37 H 0.264 0.736 38 H 0.055 0.945 39 H 0.117 0.883 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.109 0.891 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.428 7.653 20.246 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.046 4.046 3 H 0.080 0.920 4 C 0.292 3.708 5 O -0.390 6.390 6 N -0.336 5.336 7 C -0.065 4.065 8 C 0.129 3.871 9 C -0.565 4.565 10 H 0.075 0.925 11 C -0.140 4.140 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.227 5.227 18 C -0.051 4.051 19 C -0.030 4.030 20 C -0.138 4.138 21 C -0.113 4.113 22 C -0.147 4.147 23 C -0.103 4.103 24 C -0.149 4.149 25 C 0.312 3.688 26 F -0.163 7.163 27 F -0.177 7.177 28 C -0.118 4.118 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.134 0.866 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.128 0.872 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.420 6.444 20.093 21.149 hybrid contribution -0.502 0.398 -0.562 0.852 sum 0.919 6.843 19.531 20.715 Atomic orbital electron populations 1.21815 0.91803 1.04118 1.02245 1.21759 0.97766 0.95808 0.89247 0.91992 1.19945 0.79305 0.87730 0.83825 1.90705 1.50669 1.13921 1.83726 1.48194 1.61476 1.09554 1.14348 1.21703 0.99169 0.82488 1.03093 1.19274 0.93805 0.92933 0.81063 1.21378 0.93224 1.35648 1.06229 0.92479 1.24925 0.95633 0.95831 0.97659 1.69914 1.16530 1.42112 1.24916 0.86562 0.81881 0.79341 0.79673 1.20265 1.21182 1.20113 1.61896 1.10908 1.49844 1.00032 1.21324 0.86878 1.00261 0.96600 1.19530 0.93701 0.96423 0.93370 1.21109 0.94903 0.98740 0.99015 1.21222 0.99879 0.97542 0.92696 1.21075 0.94188 1.00690 0.98780 1.21042 0.96074 0.96093 0.97082 1.19803 0.94666 1.04997 0.95402 1.19164 0.85676 0.81544 0.82391 1.93073 1.68052 1.58780 1.96371 1.93005 1.95956 1.79102 1.49669 1.23093 1.04514 0.94773 0.89424 0.91955 0.90943 0.90377 0.93777 0.90652 0.92296 0.94965 0.94009 0.92656 0.92696 0.86550 0.84991 0.85339 0.85455 0.85558 0.87245 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.64 37.16 0.32 -1.52 16 2 C 0.07 0.95 1.60 -68.86 -0.11 0.84 16 3 H 0.06 0.75 6.77 -51.93 -0.35 0.40 16 4 C 0.51 10.09 5.77 -10.98 -0.06 10.02 16 5 O -0.52 -12.67 14.94 5.56 0.08 -12.59 16 6 N -0.60 -12.17 2.86 -182.95 -0.52 -12.70 16 7 C 0.08 1.18 9.88 59.85 0.59 1.77 16 8 C 0.25 6.30 5.14 -5.19 -0.03 6.27 16 9 C -0.53 -14.70 9.39 -34.44 -0.32 -15.03 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 13 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 N -0.50 -7.37 4.31 -229.58 -0.99 -8.36 16 18 C 0.08 1.09 4.72 -5.15 -0.02 1.07 16 19 C -0.03 -0.40 5.79 -104.62 -0.61 -1.00 16 20 C -0.12 -1.40 9.65 -39.48 -0.38 -1.78 16 21 C -0.10 -0.95 10.05 -39.65 -0.40 -1.35 16 22 C -0.13 -1.28 10.05 -39.65 -0.40 -1.67 16 23 C -0.08 -0.98 9.34 -39.49 -0.37 -1.35 16 24 C -0.15 -1.95 5.35 -104.60 -0.56 -2.51 16 25 C 0.35 4.59 2.08 -27.93 -0.06 4.53 16 26 F -0.18 -2.79 17.04 2.25 0.04 -2.75 16 27 F -0.20 -2.44 16.50 2.25 0.04 -2.40 16 28 C 0.01 0.13 4.89 -3.74 -0.02 0.11 16 29 H 0.06 0.61 6.45 -51.93 -0.34 0.28 16 30 H 0.07 0.91 7.21 -51.93 -0.37 0.54 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 34 H 0.06 0.70 5.38 -51.93 -0.28 0.42 16 35 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.04 1.19 7.50 -51.93 -0.39 0.80 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 39 H 0.12 2.00 6.18 -51.93 -0.32 1.68 16 40 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.13 1.28 7.86 -52.49 -0.41 0.87 16 44 H 0.11 1.14 5.90 -51.93 -0.31 0.83 16 45 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -33.61 369.76 -8.69 -42.30 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.11 Total: -0.32 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -2.52 Total: 0.06 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.78 Total: -46.63 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.08 Total: -5.15 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.61 -8.69 -42.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610989965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.353 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds