Wall clock time and date at job start Tue Mar 31 2020 21:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47430 * 2 1 4 4 C 1.50700 * 109.46916 * 239.99957 * 2 1 3 5 5 O 1.21277 * 120.00036 * 270.45205 * 4 2 1 6 6 N 1.34778 * 119.99760 * 90.44794 * 4 2 1 7 7 C 1.46497 * 120.00466 * 354.81743 * 6 4 2 8 8 C 1.46504 * 119.99779 * 174.81507 * 6 4 2 9 9 C 1.50707 * 109.46900 * 90.00138 * 8 6 4 10 10 H 1.07993 * 119.99965 * 359.97438 * 9 8 6 11 11 C 1.37875 * 119.99794 * 179.97438 * 9 8 6 12 12 N 1.31512 * 120.00105 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99990 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46884 * 60.00260 * 13 11 9 15 15 H 1.48496 * 109.47567 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47612 * 300.00604 * 13 11 9 17 17 N 1.46902 * 109.47264 * 120.00219 * 2 1 3 18 18 C 1.46647 * 110.99465 * 174.87739 * 17 2 1 19 19 C 1.50618 * 110.48727 * 176.00758 * 18 17 2 20 20 C 1.38739 * 118.43451 * 162.50532 * 19 18 17 21 21 C 1.38017 * 120.37468 * 179.55703 * 20 19 18 22 22 C 1.38265 * 119.87329 * 0.02562 * 21 20 19 23 23 C 1.38032 * 119.82594 * 0.07504 * 22 21 20 24 24 C 1.37834 * 121.84355 * 342.22200 * 19 18 17 25 25 C 1.50718 * 121.65386 * 0.77047 * 24 19 18 26 26 F 1.39907 * 109.38778 * 103.04005 * 25 24 19 27 27 F 1.39902 * 109.39179 * 222.74296 * 25 24 19 28 28 C 1.47159 * 111.00057 * 297.85191 * 17 2 1 29 29 H 1.09003 * 109.46798 * 305.56301 * 1 2 3 30 30 H 1.08993 * 109.46921 * 65.56476 * 1 2 3 31 31 H 1.08998 * 109.46662 * 185.56661 * 1 2 3 32 32 H 1.09001 * 109.47190 * 94.60618 * 7 6 4 33 33 H 1.08996 * 109.47478 * 214.61504 * 7 6 4 34 34 H 1.09004 * 109.46465 * 334.61066 * 7 6 4 35 35 H 1.08994 * 109.47102 * 209.99921 * 8 6 4 36 36 H 1.08994 * 109.47080 * 330.00238 * 8 6 4 37 37 H 0.97000 * 119.99821 * 179.97438 * 12 11 9 38 38 H 1.08998 * 109.29741 * 55.73062 * 18 17 2 39 39 H 1.09001 * 109.26112 * 296.25100 * 18 17 2 40 40 H 1.07994 * 119.81430 * 359.53417 * 20 19 18 41 41 H 1.07997 * 120.06426 * 180.02562 * 21 20 19 42 42 H 1.07995 * 120.08511 * 180.02562 * 22 21 20 43 43 H 1.07997 * 119.82747 * 180.02562 * 23 22 21 44 44 H 1.09007 * 109.62879 * 45.64108 * 28 17 2 45 45 H 1.08997 * 109.79424 * 285.15717 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.2266 -1.9072 -1.2029 6 7 2.2655 -0.0157 -2.3616 7 6 1.9242 1.4072 -2.4310 8 6 2.8605 -0.6837 -3.5219 9 6 1.7669 -1.2470 -4.3926 10 1 0.7324 -1.1205 -4.1097 11 6 2.0873 -1.9238 -5.5503 12 7 3.3471 -2.0783 -5.8945 13 14 0.7319 -2.6227 -6.6291 14 1 -0.1512 -1.5214 -7.0901 15 1 1.3348 -3.2996 -7.8052 16 1 -0.0657 -3.6031 -5.8493 17 7 2.0198 -0.6925 1.1994 18 6 3.4806 -0.8188 1.1736 19 6 3.9785 -1.4422 2.4511 20 6 5.2590 -1.9757 2.4705 21 6 5.7591 -2.5484 3.6224 22 6 4.9803 -2.5919 4.7640 23 6 3.7052 -2.0634 4.7458 24 6 3.2016 -1.4885 3.5887 25 6 1.8011 -0.9320 3.6133 26 9 0.8819 -1.9845 3.5451 27 9 1.6042 -0.2220 4.8026 28 6 1.5904 0.0038 2.4227 29 1 -0.3633 0.5977 0.8360 30 1 -0.3633 0.4251 -0.9356 31 1 -0.3632 -1.0228 0.0997 32 1 2.8026 2.0040 -2.1851 33 1 1.5892 1.6518 -3.4389 34 1 1.1267 1.6245 -1.7204 35 1 3.4463 0.0355 -4.0942 36 1 3.5080 -1.4923 -3.1831 37 1 3.5725 -2.5548 -6.7088 38 1 3.9255 0.1695 1.0583 39 1 3.7725 -1.4447 0.3303 40 1 5.8679 -1.9430 1.5792 41 1 6.7567 -2.9618 3.6320 42 1 5.3683 -3.0389 5.6674 43 1 3.0971 -2.0970 5.6376 44 1 0.5350 0.2647 2.3442 45 1 2.1821 0.9089 2.5591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610989965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:18 Heat of formation + Delta-G solvation = -106.977299 kcal Electronic energy + Delta-G solvation = -30391.737055 eV Core-core repulsion = 26044.526781 eV Total energy + Delta-G solvation = -4347.210274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.07905 -48.02917 -41.51781 -40.42819 -38.28710 -36.55126 -34.83784 -33.90440 -33.03529 -31.23416 -30.17219 -29.65690 -27.41491 -26.12722 -25.66735 -24.77671 -23.39663 -22.95883 -21.08224 -19.93089 -18.80322 -18.65364 -18.43677 -18.33176 -17.76274 -17.06178 -16.86499 -16.67641 -16.22792 -16.09183 -15.58233 -15.37962 -15.28744 -15.01546 -14.93744 -14.68891 -14.38095 -14.17772 -14.02189 -13.92529 -13.69691 -13.66540 -13.50537 -13.34853 -13.18615 -12.95149 -12.88290 -12.72727 -12.66036 -12.59205 -12.45733 -12.18668 -12.09893 -11.72035 -11.58081 -10.63985 -10.50304 -10.07108 -9.92637 -9.49494 -9.38480 -8.22219 -6.36302 0.08808 0.27075 1.36132 1.40670 1.47446 1.72847 2.04980 2.38589 2.54259 2.58156 2.68332 2.97806 3.07590 3.26515 3.49330 3.65664 3.76487 3.96239 3.99397 4.02952 4.08791 4.20142 4.26191 4.36025 4.38350 4.42321 4.46188 4.57052 4.68956 4.69624 4.78738 4.83396 4.90542 4.94499 5.00871 5.21376 5.22367 5.28965 5.36281 5.43007 5.55800 5.66970 5.71168 5.84774 5.88656 6.06697 6.70406 6.78164 7.29082 7.48781 8.84439 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.003152 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.546076 B = 8880.490446 C = 9622.376062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.079 3.921 3 H 0.100 0.900 4 C 0.501 3.499 5 O -0.576 6.576 6 N -0.609 5.609 7 C 0.073 3.927 8 C 0.264 3.736 9 C -0.542 4.542 10 H 0.052 0.948 11 C 0.009 3.991 12 N -0.928 5.928 13 Si 0.964 3.036 14 H -0.259 1.259 15 H -0.278 1.278 16 H -0.280 1.280 17 N -0.526 5.526 18 C 0.083 3.917 19 C -0.050 4.050 20 C -0.134 4.134 21 C -0.093 4.093 22 C -0.123 4.123 23 C -0.096 4.096 24 C -0.167 4.167 25 C 0.345 3.655 26 F -0.200 7.200 27 F -0.192 7.192 28 C 0.015 3.985 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.026 0.974 36 H -0.004 1.004 37 H 0.267 0.733 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.134 0.866 41 H 0.158 0.842 42 H 0.160 0.840 43 H 0.137 0.863 44 H 0.127 0.873 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.599 9.376 21.873 23.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 H 0.117 0.883 4 C 0.289 3.711 5 O -0.454 6.454 6 N -0.341 5.341 7 C -0.069 4.069 8 C 0.142 3.858 9 C -0.580 4.580 10 H 0.070 0.930 11 C -0.190 4.190 12 N -0.568 5.568 13 Si 0.788 3.212 14 H -0.183 1.183 15 H -0.203 1.203 16 H -0.206 1.206 17 N -0.252 5.252 18 C -0.044 4.044 19 C -0.051 4.051 20 C -0.153 4.153 21 C -0.110 4.110 22 C -0.141 4.141 23 C -0.114 4.114 24 C -0.168 4.168 25 C 0.308 3.692 26 F -0.181 7.181 27 F -0.173 7.173 28 C -0.113 4.113 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.044 0.956 36 H 0.014 0.986 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.152 0.848 41 H 0.175 0.825 42 H 0.177 0.823 43 H 0.155 0.845 44 H 0.145 0.855 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.575 8.228 21.736 23.248 hybrid contribution -0.164 -0.168 -0.995 1.023 sum 0.411 8.059 20.740 22.255 Atomic orbital electron populations 1.21856 0.90263 1.03306 1.04301 1.21690 0.98661 0.96421 0.86428 0.88300 1.20950 0.77866 0.87279 0.85048 1.90669 1.53052 1.16889 1.84830 1.48188 1.61101 1.11718 1.13109 1.22016 1.01659 0.79272 1.03946 1.18710 0.92847 0.91777 0.82453 1.21677 0.93463 1.36027 1.06858 0.92965 1.25816 0.97999 0.96082 0.99140 1.70031 1.18450 1.42796 1.25497 0.85527 0.79030 0.78835 0.77789 1.18335 1.20348 1.20622 1.61761 1.11089 1.51320 1.00995 1.21139 0.87129 1.00396 0.95781 1.19571 0.94598 0.97761 0.93148 1.21319 0.94697 0.99180 1.00072 1.21588 1.01102 0.96410 0.91926 1.21477 0.93375 0.99410 0.99838 1.21312 0.97048 0.96067 0.96971 1.19943 0.94798 1.06052 0.95988 1.19326 0.85381 0.81453 0.83032 1.93036 1.68722 1.59823 1.96497 1.93006 1.95928 1.78864 1.49479 1.23166 1.05919 0.94861 0.87375 0.87877 0.90387 0.93141 0.91044 0.91424 0.88592 0.95647 0.98578 0.92437 0.91043 0.90625 0.84792 0.82482 0.82265 0.84469 0.85474 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.64 71.98 0.62 -2.67 16 2 C 0.08 2.17 1.60 44.17 0.07 2.24 16 3 H 0.10 2.01 6.77 -2.39 -0.02 1.99 16 4 C 0.50 20.36 5.77 87.66 0.51 20.86 16 5 O -0.58 -30.08 14.94 -3.02 -0.05 -30.13 16 6 N -0.61 -24.93 2.86 -851.13 -2.43 -27.36 16 7 C 0.07 2.02 9.88 127.77 1.26 3.29 16 8 C 0.26 14.00 5.14 85.63 0.44 14.44 16 9 C -0.54 -31.17 9.39 25.60 0.24 -30.93 16 10 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 11 C 0.01 0.50 5.46 84.65 0.46 0.96 16 12 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 13 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 14 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 16 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 17 N -0.53 -15.07 4.31 -880.27 -3.79 -18.86 16 18 C 0.08 2.41 4.72 85.58 0.40 2.81 16 19 C -0.05 -1.35 5.79 -19.87 -0.12 -1.47 16 20 C -0.13 -3.15 9.65 22.34 0.22 -2.93 16 21 C -0.09 -1.69 10.05 22.22 0.22 -1.47 16 22 C -0.12 -2.15 10.05 22.23 0.22 -1.93 16 23 C -0.10 -2.07 9.34 22.33 0.21 -1.86 16 24 C -0.17 -4.30 5.35 -19.85 -0.11 -4.40 16 25 C 0.34 8.64 2.08 29.82 0.06 8.70 16 26 F -0.20 -6.05 17.04 44.97 0.77 -5.29 16 27 F -0.19 -4.41 16.50 44.97 0.74 -3.66 16 28 C 0.02 0.32 4.89 86.22 0.42 0.74 16 29 H 0.10 1.59 6.45 -2.39 -0.02 1.58 16 30 H 0.08 1.75 7.21 -2.39 -0.02 1.73 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 2.00 8.11 -2.39 -0.02 1.98 16 34 H 0.10 1.94 5.38 -2.38 -0.01 1.92 16 35 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 36 H 0.00 -0.24 7.50 -2.39 -0.02 -0.26 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.07 1.74 8.13 -2.39 -0.02 1.72 16 39 H 0.08 2.82 6.18 -2.39 -0.01 2.80 16 40 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 41 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 42 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 43 H 0.14 2.56 7.86 -2.91 -0.02 2.54 16 44 H 0.13 2.21 5.90 -2.38 -0.01 2.20 16 45 H 0.09 1.57 8.05 -2.39 -0.02 1.55 16 Total: -1.00 -78.32 369.76 3.70 -74.62 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.01 Total: 12.91 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 5.14 Total: 6.39 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -5.94 Total: -102.00 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.05 Total: -30.13 kcal Atomic # 9 Polarization: -10.46 SS G_CDS: 1.51 Total: -8.95 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -78.32 3.70 -74.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610989965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.362 kcal (2) G-P(sol) polarization free energy of solvation -78.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds