Wall clock time and date at job start Tue Mar 31 2020 20:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46641 * 2 1 4 4 C 1.50692 * 109.47293 * 120.00098 * 2 1 3 5 5 H 1.08006 * 120.00002 * 120.00087 * 4 2 1 6 6 C 1.37878 * 120.00562 * 300.00184 * 4 2 1 7 7 N 1.31517 * 119.99281 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00207 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47258 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46875 * 120.00274 * 8 6 4 11 11 H 1.48504 * 109.46982 * 239.99835 * 8 6 4 12 12 N 1.46898 * 109.46972 * 240.00750 * 2 1 3 13 13 C 1.46907 * 111.00107 * 153.74898 * 12 2 1 14 14 H 1.09002 * 109.39513 * 31.57568 * 13 12 2 15 15 C 1.53066 * 109.40214 * 151.40263 * 13 12 2 16 16 C 1.53346 * 108.42311 * 169.03156 * 15 13 12 17 17 C 1.52938 * 108.65999 * 292.45501 * 16 15 13 18 18 N 1.45751 * 110.47891 * 50.78617 * 17 16 15 19 19 C 1.46501 * 117.94474 * 160.90944 * 18 17 16 20 20 C 1.50699 * 109.47081 * 269.97700 * 19 18 17 21 21 C 1.38223 * 119.98731 * 105.00389 * 20 19 18 22 22 C 1.38185 * 120.05091 * 179.97438 * 21 20 19 23 23 C 1.38494 * 120.02680 * 0.02562 * 22 21 20 24 24 F 1.35099 * 120.01541 * 179.97438 * 23 22 21 25 25 C 1.38397 * 119.97232 * 0.02562 * 23 22 21 26 26 C 1.38445 * 119.95058 * 359.72638 * 25 23 22 27 27 F 1.35100 * 120.01387 * 180.26825 * 26 25 23 28 28 C 1.33352 * 124.10523 * 340.88070 * 18 17 16 29 29 O 1.21284 * 118.24384 * 182.26939 * 28 18 17 30 30 H 1.08998 * 109.47479 * 306.00926 * 1 2 3 31 31 H 1.09000 * 109.47396 * 66.00953 * 1 2 3 32 32 H 1.08999 * 109.47081 * 186.01160 * 1 2 3 33 33 H 0.97004 * 119.99522 * 179.97438 * 7 6 4 34 34 H 1.00901 * 110.99746 * 277.70173 * 12 2 1 35 35 H 1.09002 * 109.67549 * 288.76552 * 15 13 12 36 36 H 1.08999 * 109.67421 * 49.29501 * 15 13 12 37 37 H 1.08996 * 109.60293 * 52.22695 * 16 15 13 38 38 H 1.09001 * 109.60244 * 172.71770 * 16 15 13 39 39 H 1.09001 * 109.31662 * 290.46654 * 17 16 15 40 40 H 1.08999 * 109.29050 * 171.08918 * 17 16 15 41 41 H 1.08999 * 109.47320 * 29.97935 * 19 18 17 42 42 H 1.09003 * 109.46853 * 149.97629 * 19 18 17 43 43 H 1.08003 * 119.97718 * 359.97276 * 21 20 19 44 44 H 1.08004 * 119.99048 * 180.02562 * 22 21 20 45 45 H 1.08000 * 120.02641 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.1466 -2.2871 3.6036 10 1 3.1467 -0.1876 4.8164 11 1 1.1662 -1.5869 4.8160 12 7 2.0196 -0.6923 -1.1995 13 6 3.3548 -0.2101 -1.5776 14 1 3.9012 0.0827 -0.6810 15 6 4.1154 -1.3288 -2.2939 16 6 5.3823 -0.7310 -2.9178 17 6 4.9718 0.2183 -4.0445 18 7 3.9653 1.1621 -3.5748 19 6 3.7621 2.3901 -4.3474 20 6 4.6757 3.4689 -3.8253 21 6 5.8017 3.8274 -4.5424 22 6 6.6400 4.8169 -4.0651 23 6 6.3531 5.4501 -2.8673 24 9 7.1731 6.4171 -2.4007 25 6 5.2265 5.0913 -2.1480 26 6 4.3846 4.1034 -2.6297 27 9 3.2816 3.7559 -1.9312 28 6 3.2174 0.9775 -2.4863 29 8 2.3813 1.8134 -2.2159 30 1 -0.3634 0.6042 0.8313 31 1 -0.3634 0.4178 -0.9389 32 1 -0.3633 -1.0220 0.1076 33 1 0.7089 1.1612 3.4845 34 1 2.0211 -1.6923 -1.0646 35 1 4.3894 -2.1033 -1.5776 36 1 3.4881 -1.7568 -3.0758 37 1 5.9384 -0.1801 -2.1594 38 1 6.0034 -1.5305 -3.3215 39 1 4.5640 -0.3606 -4.8731 40 1 5.8477 0.7677 -4.3895 41 1 3.9866 2.2004 -5.3970 42 1 2.7256 2.7132 -4.2502 43 1 6.0265 3.3339 -5.4763 44 1 7.5193 5.0965 -4.6264 45 1 5.0022 5.5842 -1.2137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615708452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:48 Heat of formation + Delta-G solvation = -90.844010 kcal Electronic energy + Delta-G solvation = -30579.296986 eV Core-core repulsion = 26232.786304 eV Total energy + Delta-G solvation = -4346.510682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.15231 -48.59706 -40.30722 -38.83769 -36.05785 -35.97448 -33.76830 -32.05223 -31.07557 -30.52396 -29.29265 -26.61905 -26.33728 -24.96492 -23.38122 -23.08657 -22.33496 -21.48298 -19.90219 -18.39251 -18.11177 -17.29433 -16.69057 -16.47364 -16.27153 -15.87149 -15.76237 -15.52112 -15.02955 -14.99826 -14.70402 -14.37070 -14.15490 -13.92647 -13.77532 -13.58141 -13.15430 -13.09718 -12.87987 -12.23535 -12.12672 -12.03813 -11.75756 -11.73006 -11.41450 -11.31210 -11.18706 -11.08051 -10.91405 -10.86082 -10.62368 -10.21456 -9.96945 -9.68780 -9.25812 -9.06077 -8.96229 -8.70829 -8.44568 -8.30062 -7.27970 -5.92746 -4.05189 0.76423 0.89801 3.02830 3.26650 3.28816 3.36988 3.38994 3.48586 3.81406 4.37181 4.40271 4.43669 4.54267 4.68106 4.76217 4.84078 4.84636 4.98642 5.14955 5.29248 5.33299 5.41564 5.45483 5.58652 5.67637 5.72539 5.76912 5.80150 5.84380 5.92232 5.94415 6.01593 6.08616 6.23111 6.45820 6.61505 6.70364 7.08871 7.32676 7.42631 7.62513 7.77560 7.84391 8.13185 8.25366 8.38055 8.71352 8.80973 9.08418 9.61843 11.09009 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.003776 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.240965 B = 7413.259132 C = 8405.085402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.211 3.789 3 H 0.047 0.953 4 C -0.549 4.549 5 H 0.052 0.948 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.887 3.113 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.672 5.672 13 C 0.086 3.914 14 H 0.079 0.921 15 C -0.126 4.126 16 C -0.132 4.132 17 C 0.120 3.880 18 N -0.612 5.612 19 C 0.152 3.848 20 C -0.154 4.154 21 C -0.053 4.053 22 C -0.175 4.175 23 C 0.129 3.871 24 F -0.135 7.135 25 C -0.201 4.201 26 C 0.155 3.845 27 F -0.091 7.091 28 C 0.518 3.482 29 O -0.503 6.503 30 H 0.076 0.924 31 H 0.015 0.985 32 H 0.020 0.980 33 H 0.260 0.740 34 H 0.333 0.667 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.187 3.441 -17.685 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.104 3.896 3 H 0.065 0.935 4 C -0.588 4.588 5 H 0.070 0.930 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.715 3.285 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.304 5.304 13 C -0.028 4.028 14 H 0.096 0.904 15 C -0.164 4.164 16 C -0.171 4.171 17 C -0.003 4.003 18 N -0.348 5.348 19 C 0.029 3.971 20 C -0.156 4.156 21 C -0.072 4.072 22 C -0.194 4.194 23 C 0.109 3.891 24 F -0.113 7.113 25 C -0.221 4.221 26 C 0.135 3.865 27 F -0.069 7.069 28 C 0.305 3.695 29 O -0.375 6.375 30 H 0.094 0.906 31 H 0.034 0.966 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.151 0.849 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.118 0.882 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 12.245 4.416 -17.733 21.997 hybrid contribution 1.027 -0.699 1.976 2.335 sum 13.272 3.717 -15.756 20.934 Atomic orbital electron populations 1.21599 0.97812 0.99088 0.99124 1.19242 0.92463 0.94707 0.83236 0.93514 1.21907 1.32080 1.12696 0.92132 0.92968 1.24928 0.94898 0.94822 0.98830 1.69945 1.36214 1.22570 1.23178 0.86635 0.78670 0.79667 0.83543 1.19971 1.21112 1.20966 1.60680 1.19599 1.09131 1.40990 1.21162 0.93101 0.92204 0.96314 0.90365 1.21895 0.95902 0.98107 1.00508 1.21838 0.98276 0.98860 0.98086 1.21292 0.90994 0.91106 0.96919 1.47509 1.39571 1.20125 1.27635 1.20169 0.99707 0.82734 0.94530 1.20501 0.98988 1.00541 0.95588 1.20742 0.91927 0.95323 0.99186 1.21092 1.02570 0.99488 0.96219 1.17337 0.89310 0.88663 0.93750 1.91519 1.70864 1.60495 1.88466 1.21170 0.96005 1.01576 1.03310 1.17428 0.84902 0.93720 0.90482 1.91852 1.48201 1.89784 1.77060 1.20563 0.80265 0.88387 0.80295 1.90741 1.33038 1.43294 1.70386 0.90562 0.96629 0.96040 0.93026 0.84867 0.90879 0.90752 0.91130 0.90077 0.92079 0.91472 0.89536 0.88152 0.84177 0.84281 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.20 37.16 0.34 -2.78 16 2 C 0.21 5.56 2.08 -68.87 -0.14 5.42 16 3 H 0.05 1.42 6.82 -51.93 -0.35 1.06 16 4 C -0.55 -15.15 8.34 -34.44 -0.29 -15.43 16 5 H 0.05 1.40 7.72 -52.48 -0.41 0.99 16 6 C 0.07 1.92 5.30 -17.82 -0.09 1.83 16 7 N -0.88 -26.06 11.39 55.43 0.63 -25.43 16 8 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 N -0.67 -14.64 5.93 -102.41 -0.61 -15.25 16 13 C 0.09 1.61 2.56 -69.08 -0.18 1.43 16 14 H 0.08 1.68 7.64 -51.93 -0.40 1.29 16 15 C -0.13 -1.69 5.25 -26.52 -0.14 -1.83 16 16 C -0.13 -1.36 6.02 -26.58 -0.16 -1.52 16 17 C 0.12 1.17 6.32 -4.48 -0.03 1.14 16 18 N -0.61 -8.38 2.80 -176.33 -0.49 -8.88 16 19 C 0.15 1.82 5.32 -5.19 -0.03 1.79 16 20 C -0.15 -1.83 5.46 -104.55 -0.57 -2.40 16 21 C -0.05 -0.46 9.66 -39.61 -0.38 -0.84 16 22 C -0.17 -1.59 10.02 -39.51 -0.40 -1.98 16 23 C 0.13 1.48 7.30 -39.43 -0.29 1.19 16 24 F -0.13 -1.59 17.27 2.25 0.04 -1.55 16 25 C -0.20 -2.66 10.01 -39.45 -0.39 -3.05 16 26 C 0.16 2.31 7.16 -39.43 -0.28 2.03 16 27 F -0.09 -1.78 12.93 2.25 0.03 -1.75 16 28 C 0.52 9.64 6.88 -11.87 -0.08 9.56 16 29 O -0.50 -11.41 11.04 5.55 0.06 -11.35 16 30 H 0.08 2.18 6.26 -51.93 -0.32 1.86 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.33 6.84 7.96 -39.29 -0.31 6.53 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 37 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 41 H 0.09 0.70 7.82 -51.93 -0.41 0.30 16 42 H 0.10 1.46 7.07 -51.93 -0.37 1.09 16 43 H 0.14 0.74 8.00 -52.48 -0.42 0.32 16 44 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 45 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -33.21 367.88 -9.27 -42.48 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.35 Total: 5.16 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -3.11 Total: -5.46 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.47 Total: -49.55 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.06 Total: -11.35 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.07 Total: -3.30 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.21 -9.27 -42.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615708452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.364 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds