Wall clock time and date at job start Tue Mar 31 2020 21:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00152 * 2 1 4 4 C 1.52998 * 109.47318 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.47165 * 64.99590 * 4 3 2 6 6 C 1.42908 * 114.00073 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47012 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.46591 * 175.00098 * 7 6 5 9 9 C 1.52995 * 109.47098 * 54.99982 * 7 6 5 10 10 N 1.46495 * 109.47065 * 295.00181 * 7 6 5 11 11 C 1.34775 * 120.00061 * 205.00360 * 10 7 6 12 12 O 1.21595 * 119.99744 * 0.27463 * 11 10 7 13 13 N 1.34770 * 120.00478 * 179.97438 * 11 10 7 14 14 C 1.39942 * 120.00358 * 174.83218 * 13 11 10 15 15 C 1.38955 * 120.03417 * 326.19813 * 14 13 11 16 16 C 1.38163 * 120.06540 * 179.71947 * 15 14 13 17 17 C 1.38167 * 120.13847 * 0.55187 * 16 15 14 18 18 C 1.38901 * 120.06864 * 359.72048 * 17 16 15 19 19 O 1.35754 * 120.03309 * 179.97438 * 18 17 16 20 20 C 1.34832 * 116.99864 * 185.92996 * 19 18 17 21 21 H 1.08000 * 120.00358 * 5.41882 * 20 19 18 22 22 C 1.38658 * 119.99854 * 185.41709 * 20 19 18 23 23 N 1.31559 * 119.99866 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99908 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46860 * 60.00716 * 24 22 20 26 26 H 1.48500 * 109.46703 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47353 * 300.00074 * 24 22 20 28 28 C 1.38713 * 120.03465 * 146.46821 * 14 13 11 29 29 H 1.09009 * 109.47322 * 300.00394 * 1 2 3 30 30 H 1.08996 * 109.47225 * 60.00295 * 1 2 3 31 31 H 1.09004 * 109.47295 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47411 * 59.99531 * 3 2 1 33 33 H 1.09003 * 109.47082 * 300.00153 * 3 2 1 34 34 H 1.08999 * 109.47304 * 304.99639 * 4 3 2 35 35 H 1.08998 * 109.47290 * 184.99501 * 4 3 2 36 36 H 1.08997 * 109.46848 * 59.99973 * 6 5 4 37 37 H 1.09004 * 109.46559 * 299.99816 * 6 5 4 38 38 H 1.09004 * 109.47281 * 299.99804 * 9 7 6 39 39 H 1.09000 * 109.47611 * 60.00215 * 9 7 6 40 40 H 1.08997 * 109.47257 * 179.97438 * 9 7 6 41 41 H 0.97000 * 120.00519 * 24.99278 * 10 7 6 42 42 H 0.96999 * 120.00071 * 354.84083 * 13 11 10 43 43 H 1.08001 * 119.96753 * 359.97259 * 15 14 13 44 44 H 1.07999 * 119.93282 * 180.25295 * 16 15 14 45 45 H 1.08003 * 119.96417 * 179.70022 * 17 16 15 46 46 H 0.97005 * 120.00037 * 179.97438 * 23 22 20 47 47 H 1.07991 * 120.06735 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5791 -1.2200 6 6 5.3822 0.4186 -1.3215 7 6 5.7267 -0.2351 -2.6613 8 1 6.8097 -0.2767 -2.7773 9 6 5.1229 0.5883 -3.8006 10 7 5.1791 -1.5934 -2.6970 11 6 5.7390 -2.5249 -3.4940 12 8 6.7017 -2.2393 -4.1796 13 7 5.2356 -3.7747 -3.5266 14 6 5.7465 -4.7115 -4.4319 15 6 6.1912 -4.2996 -5.6823 16 6 6.7012 -5.2231 -6.5744 17 6 6.7601 -6.5601 -6.2310 18 6 6.3118 -6.9790 -4.9848 19 8 6.3696 -8.2929 -4.6484 20 6 5.8070 -8.6499 -3.4761 21 1 5.2624 -7.9209 -2.8943 22 6 5.9277 -9.9528 -3.0176 23 7 6.5914 -10.8407 -3.7261 24 14 5.1489 -10.4472 -1.3932 25 1 3.6821 -10.2246 -1.4595 26 1 5.4208 -11.8834 -1.1309 27 1 5.7252 -9.6267 -0.2979 28 6 5.8043 -6.0531 -4.0842 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.8507 0.5686 0.8427 35 1 3.9784 2.1765 0.0901 36 1 5.7354 -0.2136 -0.5068 37 1 5.8638 1.3945 -1.2592 38 1 4.0399 0.6300 -3.6846 39 1 5.5303 1.5990 -3.7741 40 1 5.3687 0.1230 -4.7551 41 1 4.4136 -1.8224 -2.1470 42 1 4.5190 -4.0248 -2.9226 43 1 6.1420 -3.2558 -5.9554 44 1 7.0500 -4.9000 -7.5441 45 1 7.1547 -7.2803 -6.9324 46 1 6.6761 -11.7522 -3.4052 47 1 5.4556 -6.3762 -3.1146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743102409.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:49 Heat of formation + Delta-G solvation = -141.971986 kcal Electronic energy + Delta-G solvation = -28697.882112 eV Core-core repulsion = 24460.241870 eV Total energy + Delta-G solvation = -4237.640242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.72083 -40.52052 -39.52638 -38.56611 -38.05018 -36.21215 -35.60880 -34.21848 -32.40975 -31.01275 -30.68165 -29.78264 -27.48323 -27.26899 -26.96416 -24.15536 -23.47365 -23.46557 -22.13006 -21.60756 -20.14183 -19.40899 -19.04897 -18.03660 -17.75226 -17.30299 -16.87992 -16.60359 -16.48490 -16.45986 -16.19713 -15.96064 -15.85955 -15.52653 -15.51948 -15.35556 -14.64271 -14.53115 -14.31679 -13.99826 -13.59501 -13.52141 -13.31544 -13.19196 -12.90182 -12.75779 -12.65221 -12.58753 -12.45098 -12.20723 -12.13799 -12.01467 -11.86804 -11.48437 -11.32281 -11.08241 -10.70985 -10.62650 -10.54114 -10.16631 -9.31051 -8.81782 -8.44537 -6.13136 0.47389 0.73052 1.36610 1.47512 1.52939 1.56881 2.06826 2.19663 2.65916 2.86983 2.90354 3.16816 3.19999 3.51718 3.79407 4.08764 4.14086 4.15751 4.26469 4.35204 4.35509 4.46294 4.47572 4.51648 4.53487 4.61271 4.61535 4.64707 4.65420 4.75296 4.81104 4.86433 4.89072 4.98460 5.05634 5.12854 5.35909 5.37142 5.50530 5.52957 5.69808 5.71499 5.97922 6.03656 6.17667 6.23273 6.31368 6.95453 6.99808 7.47193 7.79656 8.78366 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.010196 B = 0.002485 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.517465 B =11262.727574 C =13310.448032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.057 3.943 4 C 0.059 3.941 5 O -0.394 6.394 6 C 0.060 3.940 7 C 0.161 3.839 8 H 0.091 0.909 9 C -0.151 4.151 10 N -0.720 5.720 11 C 0.702 3.298 12 O -0.608 6.608 13 N -0.676 5.676 14 C 0.208 3.792 15 C -0.199 4.199 16 C -0.050 4.050 17 C -0.215 4.215 18 C 0.135 3.865 19 O -0.226 6.226 20 C -0.413 4.413 21 H 0.102 0.898 22 C -0.022 4.022 23 N -0.920 5.920 24 Si 1.018 2.982 25 H -0.255 1.255 26 H -0.273 1.273 27 H -0.258 1.258 28 C -0.262 4.262 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.036 0.964 41 H 0.411 0.589 42 H 0.417 0.583 43 H 0.128 0.872 44 H 0.154 0.846 45 H 0.120 0.880 46 H 0.273 0.727 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.513 28.884 10.232 32.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C -0.019 4.019 4 C -0.017 4.017 5 O -0.314 6.314 6 C -0.017 4.017 7 C 0.056 3.944 8 H 0.109 0.891 9 C -0.210 4.210 10 N -0.376 5.376 11 C 0.403 3.597 12 O -0.488 6.488 13 N -0.324 5.324 14 C 0.112 3.888 15 C -0.220 4.220 16 C -0.069 4.069 17 C -0.235 4.235 18 C 0.084 3.916 19 O -0.132 6.132 20 C -0.489 4.489 21 H 0.119 0.881 22 C -0.220 4.220 23 N -0.558 5.558 24 Si 0.837 3.163 25 H -0.179 1.179 26 H -0.198 1.198 27 H -0.183 1.183 28 C -0.284 4.284 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.056 0.944 41 H 0.247 0.753 42 H 0.255 0.745 43 H 0.146 0.854 44 H 0.172 0.828 45 H 0.138 0.862 46 H 0.082 0.918 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.543 28.616 9.412 31.600 hybrid contribution -0.842 -0.667 1.198 1.609 sum -10.384 27.949 10.610 31.648 Atomic orbital electron populations 1.22863 0.79935 1.03417 1.00729 1.87915 1.21010 1.28807 1.95582 1.22734 0.92389 0.84931 1.01839 1.22697 0.93448 0.98692 0.86856 1.87930 1.21883 1.82638 1.38951 1.22798 0.82255 1.01012 0.95630 1.21038 0.98732 0.79317 0.95284 0.89121 1.22012 1.01786 1.00109 0.97075 1.45100 1.35902 1.10130 1.46508 1.16039 0.82204 0.80495 0.80947 1.90911 1.29570 1.80640 1.47654 1.42488 1.40286 1.09674 1.39972 1.17191 0.95702 0.86995 0.88883 1.20848 1.08033 1.00175 0.92990 1.20906 0.95833 0.90543 0.99600 1.20458 1.10438 0.97216 0.95417 1.19585 0.93676 0.84290 0.94049 1.83986 1.70298 1.19978 1.38933 1.21762 1.32890 0.96895 0.97388 0.88067 1.26588 0.97490 0.94423 1.03488 1.70184 1.41134 1.04326 1.40163 0.84661 0.78804 0.77779 0.75053 1.17936 1.19772 1.18263 1.20792 1.13592 0.92226 1.01784 0.92764 0.93589 0.89468 0.89811 0.92419 0.92495 0.89240 0.92095 0.89097 0.91858 0.89834 0.94441 0.75277 0.74526 0.85372 0.82837 0.86196 0.91848 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.54 16 2 O -0.41 -6.84 10.67 -144.34 -1.54 -8.38 16 3 C 0.06 0.61 6.32 71.98 0.45 1.06 16 4 C 0.06 0.59 6.32 71.98 0.45 1.04 16 5 O -0.39 -5.72 9.16 -144.34 -1.32 -7.04 16 6 C 0.06 0.74 5.68 71.98 0.41 1.15 16 7 C 0.16 2.95 2.98 44.99 0.13 3.08 16 8 H 0.09 1.89 7.57 -2.39 -0.02 1.87 16 9 C -0.15 -2.73 9.29 71.98 0.67 -2.07 16 10 N -0.72 -15.86 5.06 -457.83 -2.32 -18.18 16 11 C 0.70 21.52 8.26 179.06 1.48 23.00 16 12 O -0.61 -23.01 13.73 -4.02 -0.06 -23.07 16 13 N -0.68 -21.07 5.35 -317.23 -1.70 -22.77 16 14 C 0.21 8.17 6.27 38.13 0.24 8.41 16 15 C -0.20 -7.73 8.65 22.42 0.19 -7.54 16 16 C -0.05 -1.90 10.03 22.24 0.22 -1.68 16 17 C -0.22 -9.63 9.99 22.41 0.22 -9.41 16 18 C 0.14 6.94 6.64 22.56 0.15 7.09 16 19 O -0.23 -13.70 9.76 -22.80 -0.22 -13.93 16 20 C -0.41 -24.07 9.44 67.92 0.64 -23.43 16 21 H 0.10 5.36 5.30 -2.91 -0.02 5.34 16 22 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 23 N -0.92 -56.70 13.67 21.61 0.30 -56.41 16 24 Si 1.02 42.66 29.55 68.60 2.03 44.69 16 25 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 28 C -0.26 -11.84 9.04 22.51 0.20 -11.64 16 29 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 1.18 7.56 -2.38 -0.02 1.16 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.41 7.68 8.40 -92.71 -0.78 6.90 16 42 H 0.42 10.37 8.83 -92.71 -0.82 9.55 16 43 H 0.13 4.84 6.45 -2.91 -0.02 4.82 16 44 H 0.15 4.57 8.06 -2.91 -0.02 4.55 16 45 H 0.12 5.19 8.06 -2.91 -0.02 5.16 16 46 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 47 H 0.13 5.68 5.71 -2.92 -0.02 5.67 16 Total: -1.00 -79.35 397.50 1.76 -77.59 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: -0.60 Total: 37.68 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 7.19 Total: -10.19 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -3.72 Total: -97.36 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -3.14 Total: -52.42 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -79.35 1.76 -77.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743102409.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.380 kcal (2) G-P(sol) polarization free energy of solvation -79.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds