Wall clock time and date at job start Tue Mar 31 2020 20:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81006 * 1 3 3 C 1.76198 * 99.99881 * 2 1 4 4 N 1.32245 * 119.81624 * 359.97438 * 3 2 1 5 5 N 1.28478 * 122.00280 * 180.02562 * 4 3 2 6 6 C 1.31296 * 121.47347 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.27035 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47224 * 359.97353 * 7 6 5 9 9 C 1.53002 * 109.46927 * 119.97902 * 7 6 5 10 10 C 1.53010 * 109.46976 * 239.97457 * 7 6 5 11 11 C 1.41028 * 119.45907 * 359.97438 * 6 5 4 12 12 O 1.21981 * 120.91538 * 179.97438 * 11 6 5 13 13 N 1.35291 * 118.16911 * 0.25232 * 11 6 5 14 14 N 1.40101 * 120.73988 * 179.75076 * 13 11 6 15 15 C 1.28015 * 120.00100 * 66.14957 * 14 13 11 16 16 C 1.50702 * 120.00100 * 185.16525 * 15 14 13 17 17 H 1.08997 * 109.47086 * 0.02562 * 16 15 14 18 18 C 1.53001 * 109.46923 * 240.00025 * 16 15 14 19 19 C 1.53000 * 109.47045 * 120.00063 * 16 15 14 20 20 C 1.50704 * 109.46857 * 184.99887 * 19 16 15 21 21 H 1.07998 * 120.00218 * 0.02562 * 20 19 16 22 22 C 1.37881 * 119.99787 * 179.97438 * 20 19 16 23 23 N 1.31517 * 119.99892 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99872 * 180.02562 * 22 20 19 25 25 H 1.48489 * 109.47133 * 89.99986 * 24 22 20 26 26 H 1.48505 * 109.46891 * 210.00193 * 24 22 20 27 27 H 1.48502 * 109.47005 * 330.00014 * 24 22 20 28 28 H 1.09006 * 109.46652 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47146 * 299.99740 * 1 2 3 30 30 H 1.08998 * 109.46965 * 60.00327 * 1 2 3 31 31 H 1.09001 * 109.46949 * 60.00082 * 8 7 6 32 32 H 1.08999 * 109.46895 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.47240 * 299.99994 * 8 7 6 34 34 H 1.08995 * 109.47393 * 59.99780 * 9 7 6 35 35 H 1.09008 * 109.46622 * 179.97438 * 9 7 6 36 36 H 1.09001 * 109.46924 * 299.99722 * 9 7 6 37 37 H 1.08999 * 109.46485 * 60.00209 * 10 7 6 38 38 H 1.08994 * 109.46891 * 179.97438 * 10 7 6 39 39 H 1.09002 * 109.47096 * 300.00499 * 10 7 6 40 40 H 1.08006 * 119.99941 * 5.16394 * 15 14 13 41 41 H 1.08996 * 109.46939 * 60.00538 * 18 16 15 42 42 H 1.09001 * 109.46759 * 180.02562 * 18 16 15 43 43 H 1.08999 * 109.47360 * 299.99562 * 18 16 15 44 44 H 1.08998 * 109.47288 * 305.00093 * 19 16 15 45 45 H 1.09000 * 109.47333 * 65.00104 * 19 16 15 46 46 H 0.96997 * 119.99556 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.1002 2.5820 -0.0005 5 7 1.2748 3.8548 -0.0010 6 6 2.4774 4.3818 -0.0016 7 6 2.6509 5.8788 -0.0016 8 6 1.2767 6.5514 -0.0016 9 6 3.4262 6.3023 1.2476 10 6 3.4260 6.3024 -1.2509 11 6 3.6055 3.5354 -0.0010 12 8 4.7348 3.9964 -0.0020 13 7 3.4006 2.1981 -0.0052 14 7 4.4824 1.3079 -0.0102 15 6 5.2633 1.2439 1.0022 16 6 6.4924 0.3732 0.9520 17 1 6.5489 -0.1198 -0.0185 18 6 6.4152 -0.6822 2.0570 19 6 7.7382 1.2372 1.1579 20 6 8.9718 0.3888 0.9859 21 1 8.8768 -0.6614 0.7526 22 6 10.2218 0.9537 1.1254 23 7 10.3376 2.2329 1.4080 24 14 11.7510 -0.0977 0.9114 25 1 12.1724 -0.0746 -0.5122 26 1 12.8444 0.4404 1.7602 27 1 11.4518 -1.4948 1.3165 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.7245 6.2496 0.8885 32 1 1.4023 7.6342 -0.0011 33 1 0.7245 6.2497 -0.8915 34 1 4.4051 5.8231 1.2476 35 1 3.5520 7.3851 1.2473 36 1 2.8740 6.0006 2.1376 37 1 2.8737 6.0006 -2.1408 38 1 3.5511 7.3851 -1.2511 39 1 4.4050 5.8231 -1.2510 40 1 5.0414 1.8139 1.8923 41 1 5.5277 -1.2977 1.9102 42 1 7.3043 -1.3116 2.0210 43 1 6.3589 -0.1888 3.0274 44 1 7.7465 2.0435 0.4246 45 1 7.7252 1.6599 2.1625 46 1 11.2170 2.6301 1.5065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766010814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:58 Heat of formation + Delta-G solvation = 53.076868 kcal Electronic energy + Delta-G solvation = -27540.327843 eV Core-core repulsion = 23786.191176 eV Total energy + Delta-G solvation = -3754.136667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.20607 -38.52451 -38.15688 -36.55354 -35.17989 -32.93369 -31.73454 -31.19850 -29.18546 -27.48921 -27.28118 -27.15912 -26.25144 -25.10832 -24.04390 -22.18901 -20.20145 -19.67842 -19.35632 -18.67930 -17.64319 -16.77142 -16.24033 -15.89497 -15.49165 -14.72036 -14.61844 -14.37153 -14.15529 -13.90969 -13.82872 -13.41366 -13.39272 -13.14179 -13.02761 -12.69110 -12.54288 -12.15930 -12.10791 -11.92188 -11.89826 -11.59329 -11.45410 -11.34411 -11.20978 -11.05980 -11.00219 -10.86720 -10.82843 -10.64023 -10.55469 -10.34720 -10.08994 -9.67236 -9.39914 -9.20394 -8.94288 -8.44511 -8.17114 -6.08194 -4.12150 0.10930 0.60211 1.30388 1.48003 1.80768 1.87962 3.19463 3.28252 3.35039 3.36727 3.75551 3.88799 4.37484 4.52667 4.67766 4.78240 4.81434 4.86423 4.90687 4.93224 5.19149 5.28003 5.36520 5.48263 5.62187 5.62727 5.63190 5.76400 5.78009 5.80889 5.84967 5.88063 5.91215 6.10239 6.12552 6.17016 6.29546 6.38743 6.51842 6.71348 6.77232 7.12480 7.50101 7.55948 7.74513 7.87395 8.24511 8.35284 8.92354 9.52158 11.02927 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011322 B = 0.003437 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.548979 B = 8144.566502 C =10248.749265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S 0.042 5.958 3 C 0.307 3.693 4 N -0.343 5.343 5 N -0.179 5.179 6 C 0.016 3.984 7 C 0.008 3.992 8 C -0.129 4.129 9 C -0.146 4.146 10 C -0.145 4.145 11 C 0.490 3.510 12 O -0.484 6.484 13 N -0.371 5.371 14 N -0.295 5.295 15 C 0.204 3.796 16 C -0.050 4.050 17 H 0.089 0.911 18 C -0.130 4.130 19 C 0.035 3.965 20 C -0.520 4.520 21 H 0.061 0.939 22 C 0.060 3.940 23 N -0.891 5.891 24 Si 0.894 3.106 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.273 1.273 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.109 0.891 41 H 0.040 0.960 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.024 0.976 45 H 0.023 0.977 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.003 0.486 -0.588 21.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 S 0.273 5.727 3 C -0.063 4.063 4 N -0.192 5.192 5 N -0.013 5.013 6 C -0.161 4.161 7 C 0.005 3.995 8 C -0.186 4.186 9 C -0.204 4.204 10 C -0.203 4.203 11 C 0.280 3.720 12 O -0.351 6.351 13 N -0.177 5.177 14 N -0.096 5.096 15 C -0.006 4.006 16 C -0.071 4.071 17 H 0.107 0.893 18 C -0.188 4.188 19 C -0.003 4.003 20 C -0.558 4.558 21 H 0.079 0.921 22 C -0.143 4.143 23 N -0.529 5.529 24 Si 0.722 3.278 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.197 1.197 28 H 0.131 0.869 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.059 0.941 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.247 -0.169 -1.454 21.298 hybrid contribution 1.460 0.818 0.553 1.762 sum -19.787 0.649 -0.901 19.819 Atomic orbital electron populations 1.23736 0.93416 1.07019 1.08033 1.86369 1.07605 0.90774 1.87989 1.27503 0.82759 1.03758 0.92259 1.73917 1.21537 0.96975 1.26784 1.72048 1.21559 1.04020 1.03629 1.24327 0.88083 0.99054 1.04608 1.19227 0.97527 0.85094 0.97621 1.21723 0.94526 0.99467 1.02912 1.21954 1.01150 1.01938 0.95339 1.21945 1.01198 1.01804 0.95371 1.18350 0.92442 0.80918 0.80311 1.91041 1.23658 1.72739 1.47657 1.48079 1.04795 1.07218 1.57622 1.75566 0.98486 1.10849 1.24700 1.27706 0.91513 0.89434 0.91950 1.20757 0.89377 0.95567 1.01425 0.89300 1.21706 1.01873 0.97884 0.97340 1.19155 0.88604 0.94583 0.97969 1.21065 0.90193 0.95692 1.48882 0.92069 1.25010 0.99209 0.94951 0.95088 1.69971 1.23891 1.11040 1.48003 0.86559 0.82646 0.80477 0.78130 1.20615 1.21220 1.19739 0.86876 0.88441 0.88323 0.92046 0.92116 0.92040 0.90725 0.91351 0.92862 0.92852 0.91412 0.90718 0.87377 0.94066 0.89955 0.92808 0.95811 0.95829 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.65 101.05 0.97 -0.12 16 2 S 0.04 0.46 22.07 -107.50 -2.37 -1.91 16 3 C 0.31 4.51 7.95 -87.51 -0.70 3.82 16 4 N -0.34 -4.97 10.27 30.84 0.32 -4.65 16 5 N -0.18 -2.69 10.23 33.97 0.35 -2.34 16 6 C 0.02 0.25 5.69 -81.76 -0.46 -0.22 16 7 C 0.01 0.11 0.75 -155.66 -0.12 -0.01 16 8 C -0.13 -1.35 7.70 37.15 0.29 -1.07 16 9 C -0.15 -1.83 8.27 37.16 0.31 -1.53 16 10 C -0.15 -1.84 8.27 37.16 0.31 -1.54 16 11 C 0.49 8.79 7.04 -14.97 -0.11 8.68 16 12 O -0.48 -9.91 13.18 4.94 0.07 -9.84 16 13 N -0.37 -6.37 3.26 -14.46 -0.05 -6.42 16 14 N -0.30 -5.29 10.10 32.67 0.33 -4.96 16 15 C 0.20 3.61 8.90 -13.87 -0.12 3.48 16 16 C -0.05 -0.94 2.75 -91.77 -0.25 -1.19 16 17 H 0.09 1.71 8.11 -51.93 -0.42 1.29 16 18 C -0.13 -2.07 8.99 37.16 0.33 -1.74 16 19 C 0.04 0.85 4.43 -27.88 -0.12 0.73 16 20 C -0.52 -13.70 8.41 -34.44 -0.29 -13.98 16 21 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 24 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.11 0.51 8.14 -51.91 -0.42 0.09 16 29 H 0.10 0.70 8.12 -51.92 -0.42 0.28 16 30 H 0.10 0.72 8.12 -51.92 -0.42 0.30 16 31 H 0.06 0.65 8.07 -51.93 -0.42 0.23 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.65 8.07 -51.93 -0.42 0.24 16 34 H 0.07 1.13 6.39 -51.93 -0.33 0.80 16 35 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.15 6.39 -51.93 -0.33 0.81 16 40 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 1.40 6.95 -51.93 -0.36 1.04 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -31.31 392.59 -7.07 -38.39 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -7.28 Total: -1.55 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -0.06 Total: -3.15 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 1.68 Total: -43.72 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 0.46 SS G_CDS: -2.37 Total: -1.91 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.31 -7.07 -38.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766010814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.463 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds