Wall clock time and date at job start Tue Mar 31 2020 21:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46267 * 2 1 4 4 C 1.50693 * 109.47256 * 120.00010 * 2 1 3 5 5 O 1.21280 * 120.00281 * 120.00435 * 4 2 1 6 6 N 1.34781 * 120.00227 * 300.00152 * 4 2 1 7 7 C 1.46505 * 119.99845 * 0.02562 * 6 4 2 8 8 C 1.46497 * 119.99917 * 179.97438 * 6 4 2 9 9 C 1.50699 * 109.47389 * 90.00266 * 8 6 4 10 10 H 1.08009 * 119.99470 * 359.97438 * 9 8 6 11 11 C 1.37879 * 120.00333 * 179.97438 * 9 8 6 12 12 N 1.31516 * 119.99886 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 119.99858 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.46927 * 90.00163 * 13 11 9 15 15 H 1.48498 * 109.47107 * 209.99978 * 13 11 9 16 16 H 1.48496 * 109.47112 * 330.00064 * 13 11 9 17 17 N 1.46890 * 109.47125 * 240.00567 * 2 1 3 18 18 C 1.47016 * 111.00239 * 306.03957 * 17 2 1 19 19 C 1.53095 * 109.26218 * 182.39479 * 18 17 2 20 20 O 1.43020 * 109.29124 * 303.13039 * 19 18 17 21 21 C 1.43091 * 113.68830 * 58.65137 * 20 19 18 22 22 C 1.52998 * 109.50041 * 61.29656 * 21 20 19 23 23 C 1.52995 * 109.52935 * 181.39446 * 21 20 19 24 24 F 1.39904 * 109.47503 * 179.82354 * 23 21 20 25 25 F 1.39906 * 109.47009 * 299.82088 * 23 21 20 26 26 F 1.39900 * 109.47176 * 59.82109 * 23 21 20 27 27 C 1.47013 * 111.00431 * 69.67978 * 17 2 1 28 28 H 1.09000 * 109.46901 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47288 * 299.99619 * 1 2 3 30 30 H 1.09001 * 109.47623 * 59.99864 * 1 2 3 31 31 H 1.08999 * 109.47030 * 89.99516 * 7 6 4 32 32 H 1.09003 * 109.46649 * 209.99737 * 7 6 4 33 33 H 1.09000 * 109.46920 * 329.99644 * 7 6 4 34 34 H 1.09005 * 109.47113 * 209.99851 * 8 6 4 35 35 H 1.09004 * 109.47353 * 329.99939 * 8 6 4 36 36 H 0.96999 * 119.99949 * 179.97438 * 12 11 9 37 37 H 1.09008 * 109.50469 * 62.46058 * 18 17 2 38 38 H 1.09003 * 109.50515 * 302.33528 * 18 17 2 39 39 H 1.09002 * 109.50646 * 63.08857 * 19 18 17 40 40 H 1.09003 * 109.50955 * 183.17410 * 19 18 17 41 41 H 1.09000 * 109.47137 * 300.19611 * 22 21 20 42 42 H 1.09007 * 109.47016 * 60.19457 * 22 21 20 43 43 H 1.09002 * 109.47249 * 180.19534 * 22 21 20 44 44 H 1.09000 * 109.50641 * 297.53969 * 27 17 2 45 45 H 1.08997 * 109.51027 * 57.62626 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6964 1.1192 6 7 1.7068 -0.2500 2.4546 7 6 0.8640 0.9408 2.5890 8 6 2.1947 -0.9409 3.6507 9 6 3.5224 -0.3580 4.0611 10 1 3.9592 0.4465 3.4880 11 6 4.1794 -0.8516 5.1683 12 7 5.3383 -0.3431 5.5261 13 14 3.4235 -2.2425 6.1598 14 1 3.8825 -3.5453 5.6148 15 1 3.8439 -2.1239 7.5791 16 1 1.9431 -2.1639 6.0739 17 7 2.0197 -0.6923 -1.1994 18 6 1.4340 -2.0364 -1.3080 19 6 2.0152 -2.7430 -2.5355 20 8 1.7669 -1.9495 -3.6991 21 6 2.3241 -0.6334 -3.6272 22 6 3.8448 -0.7295 -3.4898 23 6 1.9739 0.1405 -4.8997 24 9 2.5157 1.4282 -4.8264 25 9 2.5026 -0.5253 -6.0108 26 9 0.5832 0.2262 -5.0255 27 6 1.7460 0.0946 -2.4107 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.1838 0.6425 2.6225 32 1 1.1218 1.4664 3.5086 33 1 1.0272 1.5996 1.7361 34 1 1.4767 -0.8154 4.4611 35 1 2.3155 -2.0022 3.4334 36 1 5.8003 -0.6901 6.3052 37 1 0.3521 -1.9546 -1.4134 38 1 1.6706 -2.6100 -0.4118 39 1 3.0897 -2.8728 -2.4059 40 1 1.5423 -3.7181 -2.6521 41 1 4.0936 -1.2822 -2.5839 42 1 4.2559 -1.2479 -4.3562 43 1 4.2685 0.2732 -3.4316 44 1 0.6692 0.2105 -2.5338 45 1 2.2096 1.0767 -2.3192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879507632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:41 Heat of formation + Delta-G solvation = -199.523376 kcal Electronic energy + Delta-G solvation = -31976.668775 eV Core-core repulsion = 27194.676178 eV Total energy + Delta-G solvation = -4781.992598 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.35053 -47.86410 -47.79726 -40.70465 -39.14753 -36.24755 -35.05202 -33.35776 -32.68126 -31.15155 -28.97519 -28.10475 -26.81094 -26.37859 -25.62574 -24.10027 -23.05576 -21.57501 -19.73725 -18.91912 -18.69620 -18.54145 -18.04021 -17.00797 -16.77830 -16.39175 -15.68943 -15.59594 -15.24455 -14.87713 -14.82073 -14.70777 -14.55166 -14.29677 -14.24205 -13.96903 -13.96017 -13.87944 -13.73668 -13.54088 -13.18711 -12.85611 -12.53085 -12.45878 -12.35150 -12.21966 -11.93598 -11.76866 -11.64065 -11.42796 -11.33843 -11.28313 -10.93781 -10.64826 -10.56603 -10.18292 -10.09069 -9.57138 -9.01785 -8.62465 -8.40112 -7.76075 -6.11964 -4.11079 2.21754 3.01232 3.21516 3.25122 3.26877 3.31909 3.33761 3.63917 3.75719 3.97953 4.22842 4.30871 4.35963 4.53456 4.71507 4.82858 4.95484 5.00219 5.06644 5.15031 5.21212 5.25898 5.32113 5.38596 5.39593 5.50593 5.57589 5.62369 5.69945 5.75756 5.88563 5.93826 6.04536 6.13712 6.55816 6.61076 6.74489 6.80851 6.90239 7.26366 7.56631 8.16532 8.42901 8.87850 8.93541 9.47914 11.01422 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.002938 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.050091 B = 9527.661983 C = 9701.146658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.065 3.935 3 H 0.108 0.892 4 C 0.516 3.484 5 O -0.523 6.523 6 N -0.596 5.596 7 C 0.080 3.920 8 C 0.218 3.782 9 C -0.529 4.529 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.897 5.897 13 Si 0.876 3.124 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.266 1.266 17 N -0.502 5.502 18 C 0.006 3.994 19 C 0.066 3.934 20 O -0.365 6.365 21 C 0.081 3.919 22 C -0.177 4.177 23 C 0.470 3.530 24 F -0.173 7.173 25 F -0.174 7.174 26 F -0.177 7.177 27 C 0.026 3.974 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.030 0.970 35 H 0.036 0.964 36 H 0.265 0.735 37 H 0.045 0.955 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.220 1.601 -18.471 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.046 4.046 3 H 0.125 0.875 4 C 0.301 3.699 5 O -0.398 6.398 6 N -0.329 5.329 7 C -0.063 4.063 8 C 0.097 3.903 9 C -0.568 4.568 10 H 0.093 0.907 11 C -0.130 4.130 12 N -0.535 5.535 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.226 5.226 18 C -0.122 4.122 19 C -0.010 4.010 20 O -0.284 6.284 21 C 0.039 3.961 22 C -0.234 4.234 23 C 0.416 3.584 24 F -0.155 7.155 25 F -0.155 7.155 26 F -0.158 7.158 27 C -0.102 4.102 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.290 0.944 -18.505 21.195 hybrid contribution -1.073 -0.183 0.571 1.229 sum -11.364 0.761 -17.934 21.245 Atomic orbital electron populations 1.22680 0.95564 1.03474 1.03831 1.21660 0.94100 0.99094 0.89769 0.87473 1.19951 0.80923 0.85173 0.83806 1.90626 1.36899 1.26540 1.85785 1.47793 1.50007 1.28429 1.06622 1.21829 0.93499 0.88004 1.03013 1.19658 0.95344 0.93628 0.81658 1.21318 1.03076 1.20383 1.12005 0.90750 1.24860 0.94628 0.96453 0.97056 1.69896 1.14765 1.42307 1.26520 0.86850 0.79958 0.83277 0.79571 1.19906 1.21067 1.19130 1.62009 1.58358 1.02191 1.00036 1.23089 0.97098 0.90788 1.01185 1.22860 1.01879 0.93469 0.82788 1.88014 1.76848 1.22434 1.41145 1.22408 0.97180 0.85910 0.90600 1.22372 0.90957 1.04886 1.05167 1.20047 0.74643 0.78025 0.85732 1.93199 1.85906 1.39897 1.96455 1.93194 1.86204 1.80341 1.55740 1.93191 1.30003 1.96188 1.96433 1.22713 1.00131 0.97901 0.89473 0.91634 0.89769 0.91855 0.93341 0.90495 0.92055 0.95257 0.94582 0.92534 0.93674 0.86623 0.90878 0.87483 0.88094 0.90975 0.90219 0.92461 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.10 8.07 37.16 0.30 -1.80 16 2 C 0.07 0.89 1.93 -68.87 -0.13 0.76 16 3 H 0.11 1.34 7.30 -51.92 -0.38 0.96 16 4 C 0.52 9.68 6.78 -10.99 -0.07 9.60 16 5 O -0.52 -11.81 13.90 5.56 0.08 -11.73 16 6 N -0.60 -11.45 2.86 -182.95 -0.52 -11.97 16 7 C 0.08 1.13 8.80 59.85 0.53 1.65 16 8 C 0.22 5.10 4.23 -5.20 -0.02 5.08 16 9 C -0.53 -14.83 9.94 -34.44 -0.34 -15.17 16 10 H 0.07 2.30 8.06 -52.48 -0.42 1.88 16 11 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 12 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 13 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 17 N -0.50 -6.64 3.79 -227.72 -0.86 -7.50 16 18 C 0.01 0.07 4.66 -3.71 -0.02 0.06 16 19 C 0.07 0.74 6.61 37.21 0.25 0.98 16 20 O -0.37 -4.40 10.18 -35.23 -0.36 -4.76 16 21 C 0.08 0.91 0.59 -90.57 -0.05 0.85 16 22 C -0.18 -1.88 7.93 37.16 0.29 -1.59 16 23 C 0.47 5.22 2.38 37.16 0.09 5.31 16 24 F -0.17 -1.82 16.35 2.25 0.04 -1.78 16 25 F -0.17 -2.03 16.74 2.25 0.04 -1.99 16 26 F -0.18 -2.06 16.69 2.25 0.04 -2.02 16 27 C 0.03 0.29 3.83 -3.71 -0.01 0.28 16 28 H 0.06 0.74 6.38 -51.93 -0.33 0.41 16 29 H 0.08 0.82 4.53 -51.93 -0.24 0.59 16 30 H 0.06 0.58 6.73 -51.93 -0.35 0.23 16 31 H 0.05 0.55 6.95 -51.93 -0.36 0.19 16 32 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 33 H 0.06 0.70 6.01 -51.93 -0.31 0.39 16 34 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 35 H 0.04 0.90 6.85 -51.93 -0.36 0.55 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.05 0.53 6.37 -51.92 -0.33 0.20 16 38 H 0.12 1.76 5.85 -51.93 -0.30 1.45 16 39 H 0.07 0.84 6.49 -51.93 -0.34 0.51 16 40 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.10 1.22 6.12 -51.93 -0.32 0.90 16 42 H 0.07 0.71 7.80 -51.92 -0.41 0.31 16 43 H 0.08 0.78 7.81 -51.93 -0.41 0.38 16 44 H 0.06 0.61 6.29 -51.93 -0.33 0.28 16 45 H 0.10 0.98 7.85 -51.93 -0.41 0.58 16 LS Contribution 352.95 15.07 5.32 5.32 Total: -1.00 -32.81 352.95 -5.39 -38.20 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.96 Total: 0.32 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 0.70 Total: 7.99 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.61 Total: -45.97 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.28 Total: -16.50 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.11 Total: -5.79 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.81 -5.39 -38.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879507632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.328 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds