Wall clock time and date at job start Tue Mar 31 2020 21:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46267 * 2 1 4 4 C 1.50693 * 109.47256 * 120.00010 * 2 1 3 5 5 O 1.21280 * 120.00281 * 120.00435 * 4 2 1 6 6 N 1.34781 * 120.00227 * 300.00152 * 4 2 1 7 7 C 1.46505 * 119.99845 * 0.02562 * 6 4 2 8 8 C 1.46497 * 119.99917 * 179.97438 * 6 4 2 9 9 C 1.50699 * 109.47389 * 90.00266 * 8 6 4 10 10 H 1.08009 * 119.99470 * 359.97438 * 9 8 6 11 11 C 1.37879 * 120.00333 * 179.97438 * 9 8 6 12 12 N 1.31516 * 119.99886 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 119.99858 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.46927 * 90.00163 * 13 11 9 15 15 H 1.48498 * 109.47107 * 209.99978 * 13 11 9 16 16 H 1.48496 * 109.47112 * 330.00064 * 13 11 9 17 17 N 1.46890 * 109.47125 * 240.00567 * 2 1 3 18 18 C 1.47016 * 111.00239 * 306.03957 * 17 2 1 19 19 C 1.53095 * 109.26218 * 182.39479 * 18 17 2 20 20 O 1.43020 * 109.29124 * 303.13039 * 19 18 17 21 21 C 1.43091 * 113.68830 * 58.65137 * 20 19 18 22 22 C 1.52998 * 109.50041 * 61.29656 * 21 20 19 23 23 C 1.52995 * 109.52935 * 181.39446 * 21 20 19 24 24 F 1.39904 * 109.47503 * 179.82354 * 23 21 20 25 25 F 1.39906 * 109.47009 * 299.82088 * 23 21 20 26 26 F 1.39900 * 109.47176 * 59.82109 * 23 21 20 27 27 C 1.47013 * 111.00431 * 69.67978 * 17 2 1 28 28 H 1.09000 * 109.46901 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47288 * 299.99619 * 1 2 3 30 30 H 1.09001 * 109.47623 * 59.99864 * 1 2 3 31 31 H 1.08999 * 109.47030 * 89.99516 * 7 6 4 32 32 H 1.09003 * 109.46649 * 209.99737 * 7 6 4 33 33 H 1.09000 * 109.46920 * 329.99644 * 7 6 4 34 34 H 1.09005 * 109.47113 * 209.99851 * 8 6 4 35 35 H 1.09004 * 109.47353 * 329.99939 * 8 6 4 36 36 H 0.96999 * 119.99949 * 179.97438 * 12 11 9 37 37 H 1.09008 * 109.50469 * 62.46058 * 18 17 2 38 38 H 1.09003 * 109.50515 * 302.33528 * 18 17 2 39 39 H 1.09002 * 109.50646 * 63.08857 * 19 18 17 40 40 H 1.09003 * 109.50955 * 183.17410 * 19 18 17 41 41 H 1.09000 * 109.47137 * 300.19611 * 22 21 20 42 42 H 1.09007 * 109.47016 * 60.19457 * 22 21 20 43 43 H 1.09002 * 109.47249 * 180.19534 * 22 21 20 44 44 H 1.09000 * 109.50641 * 297.53969 * 27 17 2 45 45 H 1.08997 * 109.51027 * 57.62626 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6964 1.1192 6 7 1.7068 -0.2500 2.4546 7 6 0.8640 0.9408 2.5890 8 6 2.1947 -0.9409 3.6507 9 6 3.5224 -0.3580 4.0611 10 1 3.9592 0.4465 3.4880 11 6 4.1794 -0.8516 5.1683 12 7 5.3383 -0.3431 5.5261 13 14 3.4235 -2.2425 6.1598 14 1 3.8825 -3.5453 5.6148 15 1 3.8439 -2.1239 7.5791 16 1 1.9431 -2.1639 6.0739 17 7 2.0197 -0.6923 -1.1994 18 6 1.4340 -2.0364 -1.3080 19 6 2.0152 -2.7430 -2.5355 20 8 1.7669 -1.9495 -3.6991 21 6 2.3241 -0.6334 -3.6272 22 6 3.8448 -0.7295 -3.4898 23 6 1.9739 0.1405 -4.8997 24 9 2.5157 1.4282 -4.8264 25 9 2.5026 -0.5253 -6.0108 26 9 0.5832 0.2262 -5.0255 27 6 1.7460 0.0946 -2.4107 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.1838 0.6425 2.6225 32 1 1.1218 1.4664 3.5086 33 1 1.0272 1.5996 1.7361 34 1 1.4767 -0.8154 4.4611 35 1 2.3155 -2.0022 3.4334 36 1 5.8003 -0.6901 6.3052 37 1 0.3521 -1.9546 -1.4134 38 1 1.6706 -2.6100 -0.4118 39 1 3.0897 -2.8728 -2.4059 40 1 1.5423 -3.7181 -2.6521 41 1 4.0936 -1.2822 -2.5839 42 1 4.2559 -1.2479 -4.3562 43 1 4.2685 0.2732 -3.4316 44 1 0.6692 0.2105 -2.5338 45 1 2.2096 1.0767 -2.3192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879507632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:40 Heat of formation + Delta-G solvation = -223.200632 kcal Electronic energy + Delta-G solvation = -31977.695498 eV Core-core repulsion = 27194.676178 eV Total energy + Delta-G solvation = -4783.019321 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.22305 -48.72262 -48.68778 -41.76232 -40.40595 -37.36430 -36.59567 -34.73857 -34.24165 -32.36049 -30.28917 -29.44163 -27.80719 -27.50212 -26.62713 -25.39583 -24.34560 -22.93424 -20.72303 -20.06739 -19.66625 -19.43593 -19.12667 -19.03265 -17.99850 -17.48928 -16.96349 -16.57234 -16.45815 -16.33869 -15.85418 -15.76224 -15.47295 -15.38438 -15.22908 -15.11433 -14.91387 -14.84211 -14.80322 -14.67923 -14.48998 -14.22654 -13.84797 -13.67742 -13.49366 -13.43594 -13.15296 -12.96199 -12.78330 -12.69415 -12.51368 -12.39606 -12.27066 -12.23017 -11.96665 -11.72439 -11.56068 -11.04428 -10.81877 -10.42248 -9.45397 -9.27949 -8.32596 -6.37508 1.33257 1.34140 1.37628 1.45816 1.82028 2.03855 2.24991 2.31912 2.57429 2.80566 2.99208 3.02106 3.36485 3.43539 3.57347 3.67713 3.86098 4.00699 4.07268 4.11234 4.24193 4.35950 4.42772 4.48339 4.52432 4.59406 4.63546 4.68059 4.76451 4.80663 4.85676 4.88352 4.95968 4.97838 5.16227 5.19888 5.47389 5.61829 5.69802 5.74985 5.88036 6.25763 6.64366 6.73535 7.23497 7.46697 8.84437 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.002938 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.050091 B = 9527.661983 C = 9701.146658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.075 3.925 3 H 0.122 0.878 4 C 0.505 3.495 5 O -0.572 6.572 6 N -0.606 5.606 7 C 0.073 3.927 8 C 0.226 3.774 9 C -0.534 4.534 10 H 0.028 0.972 11 C 0.010 3.990 12 N -0.947 5.947 13 Si 0.948 3.052 14 H -0.277 1.277 15 H -0.277 1.277 16 H -0.237 1.237 17 N -0.521 5.521 18 C 0.011 3.989 19 C 0.069 3.931 20 O -0.371 6.371 21 C 0.079 3.921 22 C -0.173 4.173 23 C 0.475 3.525 24 F -0.169 7.169 25 F -0.178 7.178 26 F -0.178 7.178 27 C 0.030 3.970 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.019 0.981 36 H 0.268 0.732 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.128 0.872 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.897 1.866 -19.212 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.036 4.036 3 H 0.139 0.861 4 C 0.293 3.707 5 O -0.451 6.451 6 N -0.338 5.338 7 C -0.069 4.069 8 C 0.104 3.896 9 C -0.573 4.573 10 H 0.046 0.954 11 C -0.188 4.188 12 N -0.587 5.587 13 Si 0.771 3.229 14 H -0.202 1.202 15 H -0.203 1.203 16 H -0.160 1.160 17 N -0.246 5.246 18 C -0.117 4.117 19 C -0.007 4.007 20 O -0.291 6.291 21 C 0.037 3.963 22 C -0.230 4.230 23 C 0.420 3.580 24 F -0.150 7.150 25 F -0.159 7.159 26 F -0.160 7.160 27 C -0.098 4.098 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.146 0.854 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.013 1.253 -19.269 23.286 hybrid contribution -0.165 -0.195 0.728 0.772 sum -13.178 1.057 -18.541 22.772 Atomic orbital electron populations 1.22633 0.92729 1.03665 1.05615 1.21581 0.96118 0.98556 0.87327 0.86089 1.20954 0.79937 0.84735 0.85034 1.90601 1.39037 1.28833 1.86637 1.47885 1.50511 1.29713 1.05656 1.22152 0.94425 0.86516 1.03766 1.19298 0.93496 0.92788 0.84037 1.21576 1.05114 1.19178 1.11416 0.95404 1.25859 0.95035 0.99403 0.98496 1.70056 1.16687 1.44400 1.27538 0.85710 0.80714 0.78807 0.77668 1.20245 1.20265 1.15964 1.61917 1.59250 1.02682 1.00709 1.22964 0.97807 0.90471 1.00412 1.22888 1.01530 0.94118 0.82151 1.88006 1.76928 1.22846 1.41299 1.22465 0.97267 0.85746 0.90829 1.22326 0.90989 1.05180 1.04541 1.19962 0.74526 0.78090 0.85437 1.93211 1.85824 1.39551 1.96415 1.93188 1.86264 1.80487 1.55957 1.93188 1.30145 1.96203 1.96427 1.22752 1.00937 0.97943 0.88212 0.92251 0.88468 0.89505 0.89774 0.91679 0.89256 0.93261 0.96275 0.92348 0.92424 0.89506 0.91797 0.85443 0.89786 0.90431 0.89411 0.91312 0.87177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.35 8.07 71.98 0.58 -2.77 16 2 C 0.08 1.91 1.93 44.17 0.09 1.99 16 3 H 0.12 2.72 7.30 -2.38 -0.02 2.70 16 4 C 0.51 18.84 6.78 87.65 0.59 19.44 16 5 O -0.57 -26.64 13.90 -3.03 -0.04 -26.68 16 6 N -0.61 -22.81 2.86 -851.12 -2.43 -25.24 16 7 C 0.07 1.87 8.80 127.77 1.12 2.99 16 8 C 0.23 10.57 4.23 85.63 0.36 10.93 16 9 C -0.53 -30.81 9.94 25.60 0.25 -30.55 16 10 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 11 C 0.01 0.58 5.47 84.65 0.46 1.04 16 12 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 13 Si 0.95 43.66 27.47 68.60 1.88 45.55 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 15 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 16 H -0.24 -9.66 6.54 99.48 0.65 -9.01 16 17 N -0.52 -13.12 3.79 -874.37 -3.31 -16.43 16 18 C 0.01 0.27 4.66 86.31 0.40 0.67 16 19 C 0.07 1.49 6.61 72.01 0.48 1.97 16 20 O -0.37 -8.38 10.18 -148.98 -1.52 -9.90 16 21 C 0.08 1.63 0.59 -10.76 -0.01 1.63 16 22 C -0.17 -3.55 7.93 71.98 0.57 -2.98 16 23 C 0.47 9.58 2.38 71.98 0.17 9.76 16 24 F -0.17 -3.18 16.35 44.97 0.74 -2.45 16 25 F -0.18 -3.87 16.74 44.97 0.75 -3.12 16 26 F -0.18 -3.73 16.69 44.97 0.75 -2.98 16 27 C 0.03 0.59 3.83 86.32 0.33 0.92 16 28 H 0.06 1.16 6.38 -2.39 -0.02 1.15 16 29 H 0.10 1.47 4.53 -2.39 -0.01 1.46 16 30 H 0.09 1.19 6.73 -2.39 -0.02 1.17 16 31 H 0.08 1.58 6.95 -2.39 -0.02 1.56 16 32 H 0.06 1.83 8.07 -2.39 -0.02 1.81 16 33 H 0.09 1.76 6.01 -2.39 -0.01 1.75 16 34 H 0.05 2.11 7.13 -2.38 -0.02 2.09 16 35 H 0.02 0.96 6.85 -2.38 -0.02 0.95 16 36 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.06 1.25 6.37 -2.38 -0.02 1.23 16 38 H 0.09 2.69 5.85 -2.39 -0.01 2.68 16 39 H 0.06 1.49 6.49 -2.39 -0.02 1.48 16 40 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.08 2.04 6.12 -2.39 -0.01 2.03 16 42 H 0.08 1.48 7.80 -2.38 -0.02 1.46 16 43 H 0.09 1.62 7.81 -2.39 -0.02 1.60 16 44 H 0.07 1.22 6.29 -2.39 -0.02 1.20 16 45 H 0.11 1.90 7.85 -2.39 -0.02 1.89 16 Total: -1.00 -74.64 352.95 3.51 -71.14 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.98 Total: 14.22 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 5.41 Total: 15.03 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -5.44 Total: -100.81 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -1.56 Total: -36.58 kcal Atomic # 9 Polarization: -10.78 SS G_CDS: 2.24 Total: -8.54 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.55 kcal Total: -74.64 3.51 -71.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879507632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.066 kcal (2) G-P(sol) polarization free energy of solvation -74.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds