Wall clock time and date at job start Tue Mar 31 2020 21:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.46631 * 2 1 4 4 C 1.50695 * 109.47097 * 240.00158 * 2 1 3 5 5 O 1.21275 * 120.00185 * 270.51055 * 4 2 1 6 6 N 1.34777 * 119.99777 * 90.51712 * 4 2 1 7 7 C 1.46494 * 120.00218 * 354.76686 * 6 4 2 8 8 C 1.46501 * 119.99644 * 174.77396 * 6 4 2 9 9 C 1.50706 * 109.47156 * 89.99624 * 8 6 4 10 10 H 1.08004 * 119.99885 * 0.02562 * 9 8 6 11 11 C 1.37880 * 120.00077 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99880 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00103 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46973 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47222 * 119.99867 * 13 11 9 16 16 H 1.48496 * 109.47327 * 240.00438 * 13 11 9 17 17 N 1.46898 * 109.47146 * 119.99938 * 2 1 3 18 18 C 1.47022 * 110.99806 * 177.98124 * 17 2 1 19 19 C 1.53091 * 109.25443 * 182.35050 * 18 17 2 20 20 O 1.43015 * 109.29671 * 303.21457 * 19 18 17 21 21 C 1.43017 * 113.73662 * 58.65160 * 20 19 18 22 22 C 1.52997 * 109.50636 * 61.30551 * 21 20 19 23 23 C 1.53003 * 109.50740 * 181.39534 * 21 20 19 24 24 F 1.39903 * 109.47000 * 59.99837 * 23 21 20 25 25 F 1.39898 * 109.46980 * 179.97438 * 23 21 20 26 26 F 1.39899 * 109.46890 * 299.99961 * 23 21 20 27 27 C 1.47021 * 111.00145 * 301.66126 * 17 2 1 28 28 H 1.09003 * 109.47172 * 185.76346 * 1 2 3 29 29 H 1.09008 * 109.47488 * 305.75703 * 1 2 3 30 30 H 1.08995 * 109.47423 * 65.76102 * 1 2 3 31 31 H 1.09005 * 109.47097 * 94.49273 * 7 6 4 32 32 H 1.09000 * 109.47422 * 214.48809 * 7 6 4 33 33 H 1.08997 * 109.47532 * 334.49444 * 7 6 4 34 34 H 1.09000 * 109.47011 * 209.99147 * 8 6 4 35 35 H 1.08999 * 109.47277 * 329.99811 * 8 6 4 36 36 H 0.96996 * 119.99638 * 180.02562 * 12 11 9 37 37 H 1.09000 * 109.47119 * 62.43683 * 18 17 2 38 38 H 1.09005 * 109.54231 * 302.30634 * 18 17 2 39 39 H 1.09002 * 109.50835 * 183.26093 * 19 18 17 40 40 H 1.09000 * 109.50766 * 63.17747 * 19 18 17 41 41 H 1.09005 * 109.47143 * 60.00492 * 22 21 20 42 42 H 1.09000 * 109.47089 * 180.02562 * 22 21 20 43 43 H 1.08995 * 109.47593 * 300.00450 * 22 21 20 44 44 H 1.08998 * 109.50649 * 57.66791 * 27 17 2 45 45 H 1.09005 * 109.53633 * 297.56174 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.2256 -1.9073 -1.2032 6 7 2.2668 -0.0154 -2.3612 7 6 1.9259 1.4076 -2.4304 8 6 2.8626 -0.6832 -3.5210 9 6 1.7697 -1.2460 -4.3929 10 1 0.7348 -1.1186 -4.1114 11 6 2.0910 -1.9227 -5.5505 12 7 3.3511 -2.0774 -5.8935 13 14 0.7363 -2.6196 -6.6315 14 1 -0.5856 -2.3119 -6.0288 15 1 0.8178 -2.0090 -7.9827 16 1 0.8996 -4.0914 -6.7427 17 7 2.0196 -0.6925 1.1994 18 6 3.4885 -0.7541 1.2094 19 6 3.9528 -1.5328 2.4430 20 8 3.4282 -0.9112 3.6193 21 6 2.0002 -0.8359 3.6426 22 6 1.4134 -2.2484 3.6067 23 6 1.5467 -0.1266 4.9202 24 9 2.0820 1.1656 4.9512 25 9 0.1498 -0.0528 4.9419 26 9 1.9937 -0.8434 6.0353 27 6 1.5160 -0.0492 2.4217 28 1 -0.3634 -1.0225 0.1032 29 1 -0.3634 0.6005 0.8340 30 1 -0.3634 0.4219 -0.9370 31 1 2.8036 2.0041 -2.1814 32 1 1.5941 1.6531 -3.4393 33 1 1.1263 1.6246 -1.7221 34 1 3.4492 0.0360 -4.0927 35 1 3.5096 -1.4922 -3.1819 36 1 3.5771 -2.5531 -6.7081 37 1 3.8944 0.2570 1.2432 38 1 3.8385 -1.2575 0.3081 39 1 5.0420 -1.5315 2.4857 40 1 3.5922 -2.5596 2.3822 41 1 1.7616 -2.8086 4.4746 42 1 0.3251 -2.1904 3.6240 43 1 1.7356 -2.7527 2.6957 44 1 0.4262 -0.0379 2.4046 45 1 1.8898 0.9734 2.4760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879507635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:51 Heat of formation + Delta-G solvation = -211.327905 kcal Electronic energy + Delta-G solvation = -31890.912057 eV Core-core repulsion = 27108.407576 eV Total energy + Delta-G solvation = -4782.504481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.36789 -47.88370 -47.81079 -40.59992 -39.04571 -36.09974 -34.83199 -33.34559 -32.71643 -31.47892 -28.71640 -27.79326 -26.62463 -26.45949 -25.73030 -23.64664 -23.07734 -21.70909 -19.94917 -18.91640 -18.68662 -18.55579 -17.96985 -16.83130 -16.65454 -16.51504 -15.74378 -15.49333 -15.27147 -14.88455 -14.72243 -14.49922 -14.37558 -14.32206 -14.24000 -14.18153 -13.98201 -13.95643 -13.83852 -13.20563 -13.08016 -12.69018 -12.38275 -12.32728 -12.21588 -12.05987 -11.81790 -11.70891 -11.70287 -11.54115 -11.33724 -11.20406 -10.88819 -10.71664 -10.62729 -10.19053 -10.06765 -9.64732 -8.93671 -8.47637 -8.44772 -7.70674 -6.08234 -4.12745 2.19692 2.98100 3.17962 3.27360 3.33585 3.36169 3.41396 3.63688 3.77631 3.99113 4.21007 4.29960 4.41459 4.51486 4.73360 4.83236 5.02426 5.08926 5.15634 5.15680 5.22121 5.26762 5.32215 5.37446 5.47598 5.52921 5.63373 5.68160 5.72054 5.82169 5.84746 6.00043 6.10619 6.23551 6.57669 6.66274 6.76805 7.01621 7.35601 7.47606 7.88065 8.18580 8.33578 8.85965 9.02975 9.52580 10.99920 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.023928 B = 0.002809 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.884457 B = 9965.720236 C =10087.973512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.064 3.936 3 H 0.060 0.940 4 C 0.510 3.490 5 O -0.519 6.519 6 N -0.603 5.603 7 C 0.080 3.920 8 C 0.248 3.752 9 C -0.524 4.524 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.282 1.282 17 N -0.505 5.505 18 C 0.011 3.989 19 C 0.068 3.932 20 O -0.365 6.365 21 C 0.080 3.920 22 C -0.176 4.176 23 C 0.470 3.530 24 F -0.176 7.176 25 F -0.173 7.173 26 F -0.173 7.173 27 C 0.026 3.974 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.032 0.968 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.044 0.956 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 6.891 20.063 21.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.047 4.047 3 H 0.077 0.923 4 C 0.294 3.706 5 O -0.394 6.394 6 N -0.336 5.336 7 C -0.064 4.064 8 C 0.129 3.871 9 C -0.563 4.563 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.208 1.208 17 N -0.230 5.230 18 C -0.117 4.117 19 C -0.008 4.008 20 O -0.284 6.284 21 C 0.038 3.962 22 C -0.233 4.233 23 C 0.416 3.584 24 F -0.158 7.158 25 F -0.155 7.155 26 F -0.155 7.155 27 C -0.102 4.102 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.880 5.774 20.061 21.073 hybrid contribution -0.580 0.659 -0.742 1.150 sum -3.460 6.433 19.318 20.653 Atomic orbital electron populations 1.21806 0.92049 1.03817 1.02329 1.21741 0.97472 0.95902 0.89576 0.92272 1.19945 0.79153 0.87689 0.83775 1.90680 1.50927 1.13967 1.83817 1.48190 1.61439 1.09541 1.14435 1.21693 0.99165 0.82513 1.03031 1.19280 0.93808 0.92937 0.81124 1.21450 0.93257 1.35430 1.06167 0.92400 1.24939 0.95633 0.95884 0.97686 1.69936 1.16466 1.42207 1.24828 0.86443 0.82014 0.78942 0.80025 1.19797 1.20992 1.20849 1.61905 1.09219 1.51997 0.99922 1.22939 0.87502 1.00323 1.00946 1.22838 0.99080 0.96754 0.82154 1.88004 1.16360 1.81450 1.42551 1.22414 0.85257 0.97690 0.90806 1.22364 1.02243 0.93440 1.05273 1.20039 0.75095 0.77480 0.85827 1.93196 1.85974 1.39811 1.96774 1.93194 1.29282 1.96258 1.96757 1.93193 1.89014 1.77814 1.55436 1.22745 1.02274 0.96033 0.89182 0.90565 0.92012 0.91082 0.93806 0.90678 0.92340 0.95000 0.94020 0.92759 0.93816 0.87597 0.87274 0.90813 0.90955 0.90258 0.88115 0.87956 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.45 37.16 0.31 -1.44 16 2 C 0.06 0.92 1.62 -68.87 -0.11 0.80 16 3 H 0.06 0.75 6.77 -51.92 -0.35 0.40 16 4 C 0.51 9.92 5.68 -10.99 -0.06 9.86 16 5 O -0.52 -12.30 15.24 5.56 0.08 -12.21 16 6 N -0.60 -12.16 2.86 -182.96 -0.52 -12.68 16 7 C 0.08 1.21 9.87 59.84 0.59 1.80 16 8 C 0.25 6.26 5.14 -5.19 -0.03 6.23 16 9 C -0.52 -14.55 9.39 -34.44 -0.32 -14.87 16 10 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 13 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 17 N -0.50 -6.74 3.70 -227.71 -0.84 -7.58 16 18 C 0.01 0.14 5.30 -3.71 -0.02 0.12 16 19 C 0.07 0.76 6.61 37.20 0.25 1.01 16 20 O -0.36 -4.39 10.17 -35.23 -0.36 -4.75 16 21 C 0.08 0.88 0.59 -90.57 -0.05 0.83 16 22 C -0.18 -1.78 7.93 37.16 0.29 -1.48 16 23 C 0.47 5.13 2.38 37.16 0.09 5.22 16 24 F -0.18 -2.05 16.68 2.25 0.04 -2.01 16 25 F -0.17 -1.76 16.35 2.25 0.04 -1.72 16 26 F -0.17 -1.98 16.75 2.25 0.04 -1.95 16 27 C 0.03 0.29 3.75 -3.71 -0.01 0.28 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.59 6.66 -51.92 -0.35 0.24 16 30 H 0.07 0.88 7.22 -51.93 -0.37 0.51 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 33 H 0.06 0.71 5.39 -51.93 -0.28 0.43 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.19 7.50 -51.93 -0.39 0.80 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.11 1.67 6.28 -51.93 -0.33 1.35 16 39 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.83 6.50 -51.93 -0.34 0.49 16 41 H 0.07 0.68 7.81 -51.93 -0.41 0.27 16 42 H 0.08 0.72 7.80 -51.93 -0.41 0.31 16 43 H 0.10 1.14 6.13 -51.93 -0.32 0.83 16 44 H 0.10 1.01 6.04 -51.93 -0.31 0.69 16 45 H 0.05 0.60 7.71 -51.93 -0.40 0.20 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -31.99 364.73 -5.81 -37.80 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.32 Total: -1.47 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 0.83 Total: 9.96 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.63 Total: -45.70 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.27 Total: -16.96 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.11 Total: -5.68 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.99 -5.81 -37.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879507635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.523 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds