Wall clock time and date at job start Tue Mar 31 2020 21:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.46631 * 2 1 4 4 C 1.50695 * 109.47097 * 240.00158 * 2 1 3 5 5 O 1.21275 * 120.00185 * 270.51055 * 4 2 1 6 6 N 1.34777 * 119.99777 * 90.51712 * 4 2 1 7 7 C 1.46494 * 120.00218 * 354.76686 * 6 4 2 8 8 C 1.46501 * 119.99644 * 174.77396 * 6 4 2 9 9 C 1.50706 * 109.47156 * 89.99624 * 8 6 4 10 10 H 1.08004 * 119.99885 * 0.02562 * 9 8 6 11 11 C 1.37880 * 120.00077 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99880 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00103 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46973 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47222 * 119.99867 * 13 11 9 16 16 H 1.48496 * 109.47327 * 240.00438 * 13 11 9 17 17 N 1.46898 * 109.47146 * 119.99938 * 2 1 3 18 18 C 1.47022 * 110.99806 * 177.98124 * 17 2 1 19 19 C 1.53091 * 109.25443 * 182.35050 * 18 17 2 20 20 O 1.43015 * 109.29671 * 303.21457 * 19 18 17 21 21 C 1.43017 * 113.73662 * 58.65160 * 20 19 18 22 22 C 1.52997 * 109.50636 * 61.30551 * 21 20 19 23 23 C 1.53003 * 109.50740 * 181.39534 * 21 20 19 24 24 F 1.39903 * 109.47000 * 59.99837 * 23 21 20 25 25 F 1.39898 * 109.46980 * 179.97438 * 23 21 20 26 26 F 1.39899 * 109.46890 * 299.99961 * 23 21 20 27 27 C 1.47021 * 111.00145 * 301.66126 * 17 2 1 28 28 H 1.09003 * 109.47172 * 185.76346 * 1 2 3 29 29 H 1.09008 * 109.47488 * 305.75703 * 1 2 3 30 30 H 1.08995 * 109.47423 * 65.76102 * 1 2 3 31 31 H 1.09005 * 109.47097 * 94.49273 * 7 6 4 32 32 H 1.09000 * 109.47422 * 214.48809 * 7 6 4 33 33 H 1.08997 * 109.47532 * 334.49444 * 7 6 4 34 34 H 1.09000 * 109.47011 * 209.99147 * 8 6 4 35 35 H 1.08999 * 109.47277 * 329.99811 * 8 6 4 36 36 H 0.96996 * 119.99638 * 180.02562 * 12 11 9 37 37 H 1.09000 * 109.47119 * 62.43683 * 18 17 2 38 38 H 1.09005 * 109.54231 * 302.30634 * 18 17 2 39 39 H 1.09002 * 109.50835 * 183.26093 * 19 18 17 40 40 H 1.09000 * 109.50766 * 63.17747 * 19 18 17 41 41 H 1.09005 * 109.47143 * 60.00492 * 22 21 20 42 42 H 1.09000 * 109.47089 * 180.02562 * 22 21 20 43 43 H 1.08995 * 109.47593 * 300.00450 * 22 21 20 44 44 H 1.08998 * 109.50649 * 57.66791 * 27 17 2 45 45 H 1.09005 * 109.53633 * 297.56174 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.2256 -1.9073 -1.2032 6 7 2.2668 -0.0154 -2.3612 7 6 1.9259 1.4076 -2.4304 8 6 2.8626 -0.6832 -3.5210 9 6 1.7697 -1.2460 -4.3929 10 1 0.7348 -1.1186 -4.1114 11 6 2.0910 -1.9227 -5.5505 12 7 3.3511 -2.0774 -5.8935 13 14 0.7363 -2.6196 -6.6315 14 1 -0.5856 -2.3119 -6.0288 15 1 0.8178 -2.0090 -7.9827 16 1 0.8996 -4.0914 -6.7427 17 7 2.0196 -0.6925 1.1994 18 6 3.4885 -0.7541 1.2094 19 6 3.9528 -1.5328 2.4430 20 8 3.4282 -0.9112 3.6193 21 6 2.0002 -0.8359 3.6426 22 6 1.4134 -2.2484 3.6067 23 6 1.5467 -0.1266 4.9202 24 9 2.0820 1.1656 4.9512 25 9 0.1498 -0.0528 4.9419 26 9 1.9937 -0.8434 6.0353 27 6 1.5160 -0.0492 2.4217 28 1 -0.3634 -1.0225 0.1032 29 1 -0.3634 0.6005 0.8340 30 1 -0.3634 0.4219 -0.9370 31 1 2.8036 2.0041 -2.1814 32 1 1.5941 1.6531 -3.4393 33 1 1.1263 1.6246 -1.7221 34 1 3.4492 0.0360 -4.0927 35 1 3.5096 -1.4922 -3.1819 36 1 3.5771 -2.5531 -6.7081 37 1 3.8944 0.2570 1.2432 38 1 3.8385 -1.2575 0.3081 39 1 5.0420 -1.5315 2.4857 40 1 3.5922 -2.5596 2.3822 41 1 1.7616 -2.8086 4.4746 42 1 0.3251 -2.1904 3.6240 43 1 1.7356 -2.7527 2.6957 44 1 0.4262 -0.0379 2.4046 45 1 1.8898 0.9734 2.4760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879507635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:50 Heat of formation + Delta-G solvation = -233.200903 kcal Electronic energy + Delta-G solvation = -31891.860541 eV Core-core repulsion = 27108.407576 eV Total energy + Delta-G solvation = -4783.452965 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.21430 -48.71161 -48.68069 -41.67878 -40.39113 -37.26668 -36.49336 -34.73992 -34.23310 -32.63246 -29.99598 -29.29067 -27.60661 -27.48821 -27.05191 -25.36929 -24.02011 -23.11350 -20.88644 -20.08638 -19.63851 -19.44441 -19.01490 -18.67880 -18.15235 -17.64771 -16.97664 -16.73691 -16.52270 -16.14867 -15.84074 -15.70450 -15.50262 -15.28095 -15.23449 -15.10387 -15.07967 -14.83451 -14.81306 -14.57892 -14.18167 -13.96393 -13.89942 -13.52161 -13.44349 -13.21309 -13.16090 -12.95513 -12.81332 -12.68108 -12.60649 -12.56820 -12.48704 -12.34462 -12.20264 -11.67570 -11.61387 -11.00731 -10.64818 -10.45402 -9.49506 -9.40603 -8.22300 -6.36450 1.33306 1.36535 1.38928 1.50419 1.76572 2.04657 2.24890 2.39357 2.58251 2.80813 2.92892 3.07565 3.36514 3.43914 3.56189 3.66854 3.83290 3.97782 4.02401 4.14194 4.21481 4.34097 4.37244 4.45275 4.53849 4.63989 4.66464 4.67523 4.74360 4.79056 4.82884 4.92165 5.00783 5.18137 5.21210 5.23436 5.55782 5.64362 5.67741 5.80311 5.85584 6.06440 6.70891 6.79091 7.29298 7.49582 8.84754 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.023928 B = 0.002809 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.884457 B = 9965.720236 C =10087.973512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.077 3.923 3 H 0.085 0.915 4 C 0.504 3.496 5 O -0.572 6.572 6 N -0.611 5.611 7 C 0.075 3.925 8 C 0.263 3.737 9 C -0.538 4.538 10 H 0.053 0.947 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.966 3.034 14 H -0.267 1.267 15 H -0.270 1.270 16 H -0.283 1.283 17 N -0.518 5.518 18 C 0.014 3.986 19 C 0.073 3.927 20 O -0.372 6.372 21 C 0.077 3.923 22 C -0.172 4.172 23 C 0.475 3.525 24 F -0.180 7.180 25 F -0.167 7.167 26 F -0.177 7.177 27 C 0.029 3.971 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.023 0.977 35 H -0.002 1.002 36 H 0.267 0.733 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.128 0.872 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.120 0.880 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.823 8.391 21.250 23.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.035 4.035 3 H 0.103 0.897 4 C 0.291 3.709 5 O -0.451 6.451 6 N -0.344 5.344 7 C -0.067 4.067 8 C 0.142 3.858 9 C -0.577 4.577 10 H 0.071 0.929 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.790 3.210 14 H -0.191 1.191 15 H -0.195 1.195 16 H -0.209 1.209 17 N -0.244 5.244 18 C -0.114 4.114 19 C -0.003 4.003 20 O -0.291 6.291 21 C 0.035 3.965 22 C -0.230 4.230 23 C 0.420 3.580 24 F -0.161 7.161 25 F -0.148 7.148 26 F -0.158 7.158 27 C -0.099 4.099 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.041 0.959 35 H 0.016 0.984 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.145 0.855 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.137 0.863 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.672 7.325 21.269 22.975 hybrid contribution 0.012 0.199 -1.068 1.087 sum -4.660 7.524 20.201 22.054 Atomic orbital electron populations 1.21839 0.90216 1.03618 1.04022 1.21656 0.98629 0.96041 0.87133 0.89746 1.20928 0.77762 0.87310 0.84880 1.90646 1.53025 1.16608 1.84811 1.48193 1.61225 1.11599 1.13352 1.21969 1.01429 0.79507 1.03821 1.18715 0.92887 0.91731 0.82503 1.21720 0.93422 1.35783 1.06780 0.92909 1.25837 0.98004 0.96138 0.99174 1.70050 1.18431 1.42907 1.25481 0.85393 0.79125 0.77934 0.78515 1.19087 1.19526 1.20855 1.61839 1.09235 1.52793 1.00495 1.22843 0.87741 1.00561 1.00302 1.22835 1.00099 0.96118 0.81251 1.87996 1.17076 1.81498 1.42536 1.22505 0.84863 0.98145 0.90945 1.22330 1.02978 0.92917 1.04730 1.19949 0.75317 0.77206 0.85529 1.93192 1.86093 1.40043 1.96773 1.93209 1.28691 1.96209 1.96713 1.93189 1.89121 1.77910 1.55629 1.22816 1.03199 0.96123 0.87782 0.92245 0.88208 0.90980 0.91447 0.91424 0.88798 0.95949 0.98433 0.92458 0.93016 0.90982 0.85467 0.91224 0.90390 0.89024 0.89645 0.86252 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.45 71.98 0.61 -2.44 16 2 C 0.08 2.03 1.62 44.17 0.07 2.10 16 3 H 0.08 1.84 6.77 -2.38 -0.02 1.82 16 4 C 0.50 19.81 5.68 87.66 0.50 20.31 16 5 O -0.57 -28.38 15.24 -3.01 -0.05 -28.42 16 6 N -0.61 -24.88 2.86 -851.15 -2.43 -27.32 16 7 C 0.07 2.12 9.87 127.77 1.26 3.39 16 8 C 0.26 13.87 5.14 85.63 0.44 14.31 16 9 C -0.54 -30.60 9.39 25.60 0.24 -30.36 16 10 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 11 C 0.01 0.42 5.46 84.66 0.46 0.88 16 12 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 13 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 17 N -0.52 -13.12 3.70 -874.34 -3.24 -16.35 16 18 C 0.01 0.35 5.30 86.31 0.46 0.81 16 19 C 0.07 1.59 6.61 72.01 0.48 2.07 16 20 O -0.37 -8.36 10.17 -148.98 -1.52 -9.87 16 21 C 0.08 1.54 0.59 -10.76 -0.01 1.53 16 22 C -0.17 -3.21 7.93 71.98 0.57 -2.64 16 23 C 0.47 9.21 2.38 71.98 0.17 9.38 16 24 F -0.18 -3.73 16.68 44.97 0.75 -2.98 16 25 F -0.17 -2.91 16.35 44.97 0.74 -2.17 16 26 F -0.18 -3.71 16.75 44.97 0.75 -2.96 16 27 C 0.03 0.55 3.75 86.31 0.32 0.88 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.10 1.44 6.66 -2.38 -0.02 1.42 16 30 H 0.07 1.57 7.22 -2.39 -0.02 1.55 16 31 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.07 2.03 8.11 -2.39 -0.02 2.01 16 33 H 0.09 1.98 5.39 -2.39 -0.01 1.97 16 34 H 0.02 1.20 8.07 -2.39 -0.02 1.19 16 35 H 0.00 -0.15 7.50 -2.39 -0.02 -0.17 16 36 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 2.39 6.28 -2.38 -0.01 2.38 16 39 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.07 1.58 6.50 -2.39 -0.02 1.56 16 41 H 0.08 1.35 7.81 -2.38 -0.02 1.33 16 42 H 0.09 1.46 7.80 -2.39 -0.02 1.44 16 43 H 0.08 1.90 6.13 -2.39 -0.01 1.88 16 44 H 0.12 1.89 6.04 -2.39 -0.01 1.88 16 45 H 0.06 1.15 7.71 -2.38 -0.02 1.13 16 Total: -1.00 -72.03 364.73 3.91 -68.12 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 1.02 Total: 10.52 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 5.57 Total: 20.22 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -5.38 Total: -99.02 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -1.56 Total: -38.29 kcal Atomic # 9 Polarization: -10.35 SS G_CDS: 2.24 Total: -8.11 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -72.03 3.91 -68.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879507635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.081 kcal (2) G-P(sol) polarization free energy of solvation -72.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds