Wall clock time and date at job start Tue Mar 31 2020 21:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47614 * 2 1 4 4 C 1.50700 * 109.47143 * 120.00271 * 2 1 3 5 5 O 1.21272 * 120.00539 * 106.35882 * 4 2 1 6 6 N 1.34780 * 119.99720 * 286.36046 * 4 2 1 7 7 C 1.46500 * 119.99802 * 359.97438 * 6 4 2 8 8 C 1.46500 * 120.00133 * 180.02562 * 6 4 2 9 9 C 1.50705 * 109.46978 * 89.99709 * 8 6 4 10 10 H 1.07997 * 120.00261 * 0.02562 * 9 8 6 11 11 C 1.37875 * 119.99788 * 179.97438 * 9 8 6 12 12 N 1.31521 * 120.00010 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99954 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47291 * 90.00471 * 13 11 9 15 15 H 1.48506 * 109.47192 * 210.00200 * 13 11 9 16 16 H 1.48495 * 109.47437 * 330.00256 * 13 11 9 17 17 N 1.46904 * 109.47369 * 239.99744 * 2 1 3 18 18 C 1.47398 * 110.99885 * 78.62273 * 17 2 1 19 19 C 1.51038 * 111.55842 * 193.26784 * 18 17 2 20 20 O 1.43454 * 107.56226 * 94.02277 * 19 18 17 21 21 C 1.36613 * 117.83956 * 277.91176 * 20 19 18 22 22 H 1.09000 * 109.21532 * 300.70568 * 21 20 19 23 23 C 1.53000 * 109.21229 * 181.38039 * 21 20 19 24 24 F 1.39905 * 109.46946 * 298.69747 * 23 21 20 25 25 F 1.39889 * 109.47373 * 58.70095 * 23 21 20 26 26 F 1.39906 * 109.46709 * 178.70284 * 23 21 20 27 27 C 1.54713 * 110.78744 * 61.04280 * 21 20 19 28 28 C 1.48026 * 110.99818 * 311.44594 * 17 2 1 29 29 H 1.09000 * 109.47413 * 60.67084 * 1 2 3 30 30 H 1.08999 * 109.47582 * 300.67068 * 1 2 3 31 31 H 1.09004 * 109.47237 * 180.66810 * 1 2 3 32 32 H 1.08997 * 109.47155 * 90.00508 * 7 6 4 33 33 H 1.09005 * 109.46833 * 210.00212 * 7 6 4 34 34 H 1.08995 * 109.47626 * 330.00033 * 7 6 4 35 35 H 1.08997 * 109.47161 * 209.99869 * 8 6 4 36 36 H 1.08994 * 109.47153 * 329.99862 * 8 6 4 37 37 H 0.96997 * 119.99623 * 179.97438 * 12 11 9 38 38 H 1.08992 * 109.06273 * 313.80902 * 18 17 2 39 39 H 1.08999 * 109.05829 * 72.73843 * 18 17 2 40 40 H 1.08993 * 109.84461 * 334.51002 * 19 18 17 41 41 H 1.09001 * 109.89766 * 213.56448 * 19 18 17 42 42 H 1.09006 * 109.53000 * 166.77380 * 27 21 20 43 43 H 1.08995 * 109.54146 * 46.53254 * 27 21 20 44 44 H 1.09001 * 108.74831 * 204.93897 * 28 17 2 45 45 H 1.09005 * 108.75293 * 323.04655 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.5133 -1.8197 1.1363 6 7 1.9469 -0.1130 2.4356 7 6 1.3663 1.2272 2.5492 8 6 2.4357 -0.8034 3.6317 9 6 3.8884 -0.4658 3.8481 10 1 4.3966 0.1970 3.1634 11 6 4.5685 -1.0023 4.9208 12 7 3.9495 -1.8091 5.7549 13 14 6.3689 -0.5833 5.1894 14 1 6.4735 0.6252 6.0459 15 1 7.0482 -1.7230 5.8566 16 1 7.0165 -0.3192 3.8795 17 7 2.0197 -0.6926 -1.1994 18 6 1.9398 0.1815 -2.3836 19 6 2.1284 -0.5988 -3.6630 20 8 0.8265 -0.9561 -4.1480 21 6 0.2236 -2.0559 -3.6063 22 1 0.8534 -2.9295 -3.7742 23 6 -1.1298 -2.2740 -4.2858 24 9 -1.9488 -1.1621 -4.0616 25 9 -0.9391 -2.4430 -5.6613 26 9 -1.7389 -3.4164 -3.7556 27 6 0.0059 -1.8697 -2.0860 28 6 1.3341 -1.9922 -1.3786 29 1 -0.3634 0.5034 -0.8959 30 1 -0.3634 0.5242 0.8839 31 1 -0.3634 -1.0276 0.0120 32 1 0.2925 1.1449 2.7172 33 1 1.8258 1.7524 3.3866 34 1 1.5486 1.7815 1.6286 35 1 1.8557 -0.4846 4.4977 36 1 2.3288 -1.8799 3.4990 37 1 4.4280 -2.1868 6.5093 38 1 0.9640 0.6665 -2.4029 39 1 2.7144 0.9453 -2.3151 40 1 2.7094 -1.4995 -3.4649 41 1 2.6418 0.0175 -4.4011 42 1 -0.6750 -2.6376 -1.7186 43 1 -0.4184 -0.8838 -1.8964 44 1 1.9800 -2.6521 -1.9578 45 1 1.1691 -2.4395 -0.3983 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880046534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:26 Heat of formation + Delta-G solvation = -225.608564 kcal Electronic energy + Delta-G solvation = -31674.170455 eV Core-core repulsion = 26891.046718 eV Total energy + Delta-G solvation = -4783.123736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.17302 -48.70359 -48.63532 -41.82881 -40.44212 -37.83986 -36.48503 -34.76640 -34.14668 -32.56373 -29.71856 -29.33363 -28.89282 -27.37472 -25.77634 -25.16388 -23.75711 -22.89415 -21.43078 -19.85487 -19.63213 -19.41639 -19.27737 -18.68200 -18.13382 -17.41664 -17.38489 -16.94757 -16.61276 -16.31308 -15.92287 -15.72740 -15.49837 -15.43909 -15.10085 -15.02011 -14.82062 -14.81326 -14.74240 -14.44909 -14.00092 -13.95138 -13.78447 -13.52801 -13.42202 -13.32180 -13.13781 -12.97419 -12.90878 -12.73998 -12.54013 -12.46390 -12.22516 -12.18717 -11.74894 -11.66264 -11.59497 -10.83504 -10.63168 -10.37706 -9.38164 -9.18974 -8.21279 -6.35960 1.36891 1.38301 1.39947 1.50306 1.89129 2.23880 2.28734 2.41257 2.74173 2.87944 2.92412 3.08159 3.42935 3.54334 3.63831 3.76059 3.87823 4.01342 4.10521 4.15524 4.27557 4.32937 4.37976 4.43190 4.47823 4.62915 4.67224 4.78506 4.80923 4.88409 4.95291 4.98514 5.03506 5.13583 5.19907 5.24726 5.58183 5.84530 5.93671 5.96568 6.08114 6.24802 6.72543 6.85406 7.30682 7.56692 8.85466 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.023175 B = 0.002692 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.925171 B =10397.150043 C =10534.370919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 H 0.123 0.877 4 C 0.502 3.498 5 O -0.579 6.579 6 N -0.611 5.611 7 C 0.077 3.923 8 C 0.262 3.738 9 C -0.540 4.540 10 H 0.052 0.948 11 C 0.007 3.993 12 N -0.930 5.930 13 Si 0.967 3.033 14 H -0.263 1.263 15 H -0.282 1.282 16 H -0.273 1.273 17 N -0.541 5.541 18 C 0.021 3.979 19 C 0.074 3.926 20 O -0.383 6.383 21 C 0.072 3.928 22 H 0.102 0.898 23 C 0.463 3.537 24 F -0.181 7.181 25 F -0.182 7.182 26 F -0.177 7.177 27 C -0.194 4.194 28 C 0.063 3.937 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.021 0.979 36 H -0.004 1.004 37 H 0.267 0.733 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.142 0.858 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.073 0.927 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.319 6.313 -21.298 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.034 4.034 3 H 0.140 0.860 4 C 0.290 3.710 5 O -0.459 6.459 6 N -0.343 5.343 7 C -0.065 4.065 8 C 0.141 3.859 9 C -0.579 4.579 10 H 0.071 0.929 11 C -0.192 4.192 12 N -0.570 5.570 13 Si 0.792 3.208 14 H -0.188 1.188 15 H -0.207 1.207 16 H -0.198 1.198 17 N -0.265 5.265 18 C -0.105 4.105 19 C -0.001 4.001 20 O -0.302 6.302 21 C 0.011 3.989 22 H 0.119 0.881 23 C 0.409 3.591 24 F -0.162 7.162 25 F -0.163 7.163 26 F -0.158 7.158 27 C -0.233 4.233 28 C -0.064 4.064 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.039 0.961 36 H 0.015 0.985 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.121 0.879 40 H 0.089 0.911 41 H 0.159 0.841 42 H 0.111 0.889 43 H 0.120 0.880 44 H 0.092 0.908 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.674 5.650 -21.262 24.033 hybrid contribution 0.003 -0.373 0.808 0.890 sum -9.671 5.277 -20.453 23.232 Atomic orbital electron populations 1.22621 0.93439 1.03119 1.04426 1.21547 0.95455 0.98453 0.87906 0.85991 1.21134 0.78498 0.86262 0.85057 1.90600 1.46701 1.22444 1.86134 1.48146 1.60014 1.18629 1.07501 1.21985 0.98393 0.82341 1.03786 1.18696 0.93464 0.91612 0.82172 1.21708 0.96989 1.28814 1.10354 0.92944 1.25857 1.03202 0.94641 0.95512 1.70054 1.38695 1.32503 1.15699 0.85421 0.78964 0.78184 0.78277 1.18821 1.20743 1.19753 1.61910 1.57468 1.04438 1.02715 1.22698 1.03044 0.96127 0.88628 1.22830 0.81300 1.00317 0.95615 1.86353 1.34525 1.45125 1.64180 1.22357 0.89939 0.93380 0.93233 0.88058 1.20421 0.87899 0.73832 0.76952 1.93181 1.75446 1.53274 1.94336 1.93188 1.95270 1.95212 1.32653 1.93201 1.84934 1.51460 1.86233 1.23335 1.00555 1.06089 0.93294 1.21815 0.92028 0.91515 1.01080 0.89089 0.90121 0.92469 0.91090 0.91681 0.88938 0.96070 0.98539 0.92462 0.92084 0.87895 0.91107 0.84070 0.88885 0.87963 0.90842 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.62 7.33 71.98 0.53 -3.09 16 2 C 0.08 2.05 1.87 44.17 0.08 2.14 16 3 H 0.12 2.67 6.47 -2.39 -0.02 2.65 16 4 C 0.50 20.09 6.70 87.66 0.59 20.68 16 5 O -0.58 -29.10 14.06 -3.00 -0.04 -29.14 16 6 N -0.61 -25.18 2.86 -851.14 -2.43 -27.61 16 7 C 0.08 2.18 9.23 127.77 1.18 3.36 16 8 C 0.26 14.06 5.16 85.63 0.44 14.51 16 9 C -0.54 -31.11 9.39 25.60 0.24 -30.87 16 10 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 11 C 0.01 0.38 5.46 84.65 0.46 0.85 16 12 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 13 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 14 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 15 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 16 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 17 N -0.54 -13.57 4.47 -878.84 -3.93 -17.50 16 18 C 0.02 0.36 4.95 85.57 0.42 0.78 16 19 C 0.07 1.06 6.50 71.34 0.46 1.52 16 20 O -0.38 -6.65 9.39 -100.65 -0.94 -7.60 16 21 C 0.07 1.26 2.28 31.18 0.07 1.33 16 22 H 0.10 1.56 7.72 -2.39 -0.02 1.54 16 23 C 0.46 8.82 2.83 71.98 0.20 9.02 16 24 F -0.18 -3.71 16.97 44.97 0.76 -2.95 16 25 F -0.18 -3.70 17.22 44.97 0.77 -2.93 16 26 F -0.18 -3.45 16.60 44.97 0.75 -2.70 16 27 C -0.19 -3.71 3.40 30.52 0.10 -3.61 16 28 C 0.06 1.59 4.11 85.43 0.35 1.94 16 29 H 0.09 1.41 5.68 -2.39 -0.01 1.40 16 30 H 0.08 1.51 6.17 -2.39 -0.01 1.49 16 31 H 0.06 1.32 5.68 -2.39 -0.01 1.31 16 32 H 0.07 1.64 7.32 -2.39 -0.02 1.62 16 33 H 0.06 1.97 8.07 -2.38 -0.02 1.95 16 34 H 0.09 1.93 6.08 -2.39 -0.01 1.92 16 35 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 36 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 37 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.06 0.94 5.95 -2.39 -0.01 0.93 16 39 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 1.12 6.78 -2.39 -0.02 1.10 16 41 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.09 1.74 7.48 -2.38 -0.02 1.72 16 43 H 0.10 1.89 4.07 -2.39 -0.01 1.88 16 44 H 0.07 1.80 6.54 -2.39 -0.02 1.78 16 45 H 0.07 2.17 5.57 -2.38 -0.01 2.15 16 Total: -1.00 -74.73 352.39 3.43 -71.30 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 1.04 Total: 9.68 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: 5.14 Total: 18.55 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -6.07 Total: -101.18 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -0.99 Total: -36.73 kcal Atomic # 9 Polarization: -10.86 SS G_CDS: 2.28 Total: -8.58 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -74.73 3.43 -71.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880046534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.304 kcal (2) G-P(sol) polarization free energy of solvation -74.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds