Wall clock time and date at job start Tue Mar 31 2020 21:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99492 * 2 1 4 4 C 1.53000 * 110.34642 * 176.32940 * 3 2 1 5 5 F 1.39908 * 109.46835 * 178.89116 * 4 3 2 6 6 F 1.39902 * 109.47211 * 298.88721 * 4 3 2 7 7 F 1.39896 * 109.47494 * 58.89386 * 4 3 2 8 8 C 1.54591 * 110.31150 * 54.18411 * 3 2 1 9 9 C 1.54929 * 102.92459 * 263.04003 * 8 3 2 10 10 N 1.48537 * 103.22853 * 322.58538 * 9 8 3 11 11 C 1.46900 * 111.00044 * 159.71903 * 10 9 8 12 12 H 1.08998 * 109.47148 * 294.64851 * 11 10 9 13 13 C 1.52993 * 109.47332 * 54.65174 * 11 10 9 14 14 C 1.50704 * 109.46791 * 174.64838 * 11 10 9 15 15 O 1.21280 * 120.00349 * 0.02562 * 14 11 10 16 16 N 1.34782 * 119.99778 * 179.97438 * 14 11 10 17 17 C 1.46495 * 119.99842 * 0.02562 * 16 14 11 18 18 C 1.46496 * 119.99566 * 180.02562 * 16 14 11 19 19 C 1.50702 * 109.47195 * 269.99650 * 18 16 14 20 20 H 1.07998 * 119.99852 * 0.02562 * 19 18 16 21 21 C 1.37874 * 120.00506 * 180.02562 * 19 18 16 22 22 N 1.31519 * 119.99610 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00441 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.46934 * 60.00110 * 23 21 19 25 25 H 1.48500 * 109.47331 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47182 * 300.00335 * 23 21 19 27 27 C 1.47901 * 105.81755 * 39.20616 * 10 9 8 28 28 H 1.09002 * 109.47338 * 173.74331 * 1 2 3 29 29 H 1.09002 * 109.47252 * 293.74119 * 1 2 3 30 30 H 1.09001 * 109.47641 * 53.74400 * 1 2 3 31 31 H 1.09003 * 110.72462 * 21.40240 * 8 3 2 32 32 H 1.09003 * 110.72318 * 144.67857 * 8 3 2 33 33 H 1.09002 * 110.66951 * 204.15395 * 9 8 3 34 34 H 1.09001 * 110.67081 * 81.01702 * 9 8 3 35 35 H 1.09008 * 109.46969 * 306.99368 * 13 11 10 36 36 H 1.09001 * 109.47243 * 66.99262 * 13 11 10 37 37 H 1.08997 * 109.47205 * 186.99253 * 13 11 10 38 38 H 1.08997 * 109.47198 * 89.99848 * 17 16 14 39 39 H 1.09004 * 109.47328 * 329.99280 * 17 16 14 40 40 H 1.09005 * 109.47034 * 209.99878 * 17 16 14 41 41 H 1.08992 * 109.47595 * 30.00364 * 18 16 14 42 42 H 1.09001 * 109.46878 * 150.00193 * 18 16 14 43 43 H 0.96999 * 119.99672 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.91832 * 94.02382 * 27 10 9 45 45 H 1.09003 * 109.92053 * 215.11927 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5343 1.2094 0.0918 5 9 4.0851 2.4952 0.0650 6 9 3.8904 0.5744 1.2865 7 9 4.0212 0.4709 -0.9920 8 6 1.4533 2.1408 1.1756 9 6 0.3218 2.9640 0.5105 10 7 0.8788 3.2880 -0.8278 11 6 -0.1904 3.6390 -1.7721 12 1 -0.8218 2.7678 -1.9462 13 6 -1.0353 4.7726 -1.1875 14 6 0.4182 4.0871 -3.0759 15 8 1.6237 4.1112 -3.2059 16 7 -0.3774 4.4601 -4.0979 17 6 -1.8336 4.4305 -3.9411 18 6 0.2142 4.8952 -5.3656 19 6 0.4405 6.3847 -5.3293 20 1 0.1710 6.9505 -4.4498 21 6 0.9916 7.0250 -6.4189 22 7 1.3193 6.3360 -7.4901 23 14 1.2727 8.8711 -6.3737 24 1 2.1943 9.2043 -5.2578 25 1 1.8723 9.3122 -7.6587 26 1 -0.0243 9.5645 -6.1683 27 6 1.5986 2.0738 -1.2696 28 1 -0.3634 -1.0215 -0.1120 29 1 -0.3634 0.4137 0.9407 30 1 -0.3634 0.6077 -0.8287 31 1 1.0518 1.4917 1.9539 32 1 2.2226 2.7988 1.5797 33 1 0.1251 3.8748 1.0761 34 1 -0.5844 2.3657 0.4154 35 1 -1.3735 4.4959 -0.1888 36 1 -0.4349 5.6805 -1.1291 37 1 -1.8995 4.9491 -1.8278 38 1 -2.1778 5.3926 -3.5616 39 1 -2.1075 3.6436 -3.2383 40 1 -2.2991 4.2333 -4.9068 41 1 1.1664 4.3865 -5.5157 42 1 -0.4616 4.6502 -6.1849 43 1 1.7067 6.7866 -8.2568 44 1 0.9423 1.4551 -1.8816 45 1 2.4836 2.3540 -1.8409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880302136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:46 Heat of formation + Delta-G solvation = -199.417486 kcal Electronic energy + Delta-G solvation = -32156.400929 eV Core-core repulsion = 27374.412923 eV Total energy + Delta-G solvation = -4781.988006 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.16348 -47.66308 -47.61788 -40.75151 -39.04209 -36.67022 -34.88201 -33.35266 -32.40487 -30.12173 -29.71394 -27.72432 -26.79484 -26.14273 -25.08314 -24.22934 -22.69525 -21.16516 -20.93162 -18.90551 -18.48897 -18.33138 -18.14513 -16.96097 -16.59225 -16.40609 -15.96912 -15.66441 -15.00705 -14.93876 -14.52093 -14.47688 -14.42274 -14.33576 -14.04158 -13.85164 -13.78824 -13.73167 -13.40983 -13.39152 -12.92660 -12.70006 -12.55417 -12.37015 -12.28253 -12.10335 -12.03389 -11.73896 -11.51922 -11.44118 -11.30072 -11.18827 -11.01208 -10.84694 -10.55095 -10.14454 -10.13937 -9.64054 -8.98204 -8.42657 -8.41203 -7.66293 -6.03649 -4.08225 2.27786 3.08586 3.31121 3.33297 3.37421 3.42343 3.53289 3.58518 3.61898 4.00297 4.07068 4.40188 4.43847 4.46610 4.68957 4.79695 4.87514 4.90448 4.93200 5.03383 5.10682 5.19894 5.28324 5.31075 5.32869 5.47194 5.51461 5.58852 5.66073 5.71974 5.85738 5.87053 6.08261 6.23997 6.36679 6.68314 6.70876 7.05959 7.42191 7.52577 7.92411 8.23311 8.37854 8.90309 9.08425 9.56809 11.04500 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.003375 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.893245 B = 8294.967614 C = 8988.788632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.359 6.359 3 C 0.060 3.940 4 C 0.478 3.522 5 F -0.161 7.161 6 F -0.178 7.178 7 F -0.173 7.173 8 C -0.147 4.147 9 C 0.031 3.969 10 N -0.482 5.482 11 C 0.056 3.944 12 H 0.060 0.940 13 C -0.153 4.153 14 C 0.509 3.491 15 O -0.520 6.520 16 N -0.602 5.602 17 C 0.084 3.916 18 C 0.248 3.752 19 C -0.525 4.525 20 H 0.057 0.943 21 C 0.061 3.939 22 N -0.896 5.896 23 Si 0.898 3.102 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.277 1.277 27 C 0.022 3.978 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.032 0.968 43 H 0.264 0.736 44 H 0.067 0.933 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.648 -12.062 18.556 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.278 6.278 3 C 0.018 3.982 4 C 0.423 3.577 5 F -0.142 7.142 6 F -0.159 7.159 7 F -0.154 7.154 8 C -0.185 4.185 9 C -0.096 4.096 10 N -0.208 5.208 11 C -0.056 4.056 12 H 0.078 0.922 13 C -0.210 4.210 14 C 0.294 3.706 15 O -0.395 6.395 16 N -0.335 5.335 17 C -0.060 4.060 18 C 0.128 3.872 19 C -0.564 4.564 20 H 0.075 0.925 21 C -0.141 4.141 22 N -0.535 5.535 23 Si 0.725 3.275 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.203 1.203 27 C -0.106 4.106 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.430 -11.744 18.271 22.389 hybrid contribution -0.438 0.550 -0.205 0.733 sum -5.869 -11.194 18.066 22.049 Atomic orbital electron populations 1.23028 0.79569 1.03612 1.00833 1.87976 1.21086 1.23750 1.94954 1.23416 0.89129 0.86516 0.99140 1.19681 0.89828 0.74146 0.74004 1.93269 1.86789 1.38060 1.96109 1.93185 1.93381 1.82390 1.46991 1.93218 1.89716 1.77295 1.55165 1.23170 1.00198 0.98694 0.96400 1.23443 0.95418 0.99834 0.90929 1.64648 1.23155 1.31775 1.01172 1.21873 0.91984 0.98964 0.92753 0.92234 1.22058 0.99830 0.98289 1.00829 1.19964 0.87395 0.79069 0.84214 1.90679 1.14052 1.53253 1.81519 1.48105 1.05450 1.64512 1.15451 1.21771 0.82201 1.00297 1.01769 1.19292 0.94651 0.95136 0.78072 1.21374 1.41667 0.92676 1.00699 0.92524 1.24926 0.95232 0.98588 0.95307 1.69922 1.42751 1.35938 1.04850 0.86563 0.78474 0.85084 0.77330 1.20136 1.21186 1.20288 1.23465 1.02532 0.90265 0.94347 0.88490 0.92888 0.93304 0.88578 0.88251 0.88429 0.92977 0.91989 0.90876 0.90272 0.92837 0.92821 0.91435 0.93887 0.95050 0.92671 0.91500 0.86880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.18 101.05 0.93 1.13 16 2 O -0.36 -4.10 10.31 -35.23 -0.36 -4.46 16 3 C 0.06 0.73 0.69 -89.26 -0.06 0.67 16 4 C 0.48 6.47 2.21 37.16 0.08 6.55 16 5 F -0.16 -2.36 16.09 2.25 0.04 -2.33 16 6 F -0.18 -2.27 17.07 2.25 0.04 -2.23 16 7 F -0.17 -2.57 16.99 2.25 0.04 -2.53 16 8 C -0.15 -1.39 5.37 -24.88 -0.13 -1.53 16 9 C 0.03 0.30 4.65 -1.90 -0.01 0.29 16 10 N -0.48 -6.72 4.82 -223.89 -1.08 -7.80 16 11 C 0.06 0.80 1.44 -68.87 -0.10 0.70 16 12 H 0.06 0.72 7.13 -51.93 -0.37 0.35 16 13 C -0.15 -1.81 8.66 37.15 0.32 -1.49 16 14 C 0.51 10.30 6.86 -10.98 -0.08 10.22 16 15 O -0.52 -12.94 14.51 5.56 0.08 -12.86 16 16 N -0.60 -12.37 2.86 -182.96 -0.52 -12.89 16 17 C 0.08 1.24 8.83 59.84 0.53 1.77 16 18 C 0.25 6.41 5.20 -5.19 -0.03 6.39 16 19 C -0.53 -14.85 9.39 -34.44 -0.32 -15.18 16 20 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 23 Si 0.90 21.96 29.54 -169.99 -5.02 16.93 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 27 C 0.02 0.32 4.20 -2.75 -0.01 0.30 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.33 6.09 -51.93 -0.32 0.01 16 30 H 0.05 0.40 5.90 -51.93 -0.31 0.09 16 31 H 0.10 0.71 7.23 -51.93 -0.38 0.34 16 32 H 0.10 0.98 7.36 -51.93 -0.38 0.59 16 33 H 0.10 0.83 7.50 -51.93 -0.39 0.44 16 34 H 0.05 0.40 6.01 -51.93 -0.31 0.09 16 35 H 0.06 0.55 6.45 -51.92 -0.34 0.22 16 36 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 37 H 0.08 0.86 4.75 -51.93 -0.25 0.61 16 38 H 0.05 0.76 7.11 -51.93 -0.37 0.39 16 39 H 0.05 0.60 5.93 -51.93 -0.31 0.30 16 40 H 0.07 0.97 7.89 -51.93 -0.41 0.56 16 41 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 42 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.07 0.93 6.00 -51.93 -0.31 0.62 16 45 H 0.11 2.01 6.50 -51.93 -0.34 1.68 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -34.02 358.49 -5.59 -39.61 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -5.96 Total: -2.39 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 1.02 Total: 11.48 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.87 Total: -46.63 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.28 Total: -17.32 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.11 Total: -7.09 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.02 -5.59 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880302136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.811 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds