Wall clock time and date at job start Tue Mar 31 2020 21:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99492 * 2 1 4 4 C 1.53000 * 110.34642 * 176.32940 * 3 2 1 5 5 F 1.39908 * 109.46835 * 178.89116 * 4 3 2 6 6 F 1.39902 * 109.47211 * 298.88721 * 4 3 2 7 7 F 1.39896 * 109.47494 * 58.89386 * 4 3 2 8 8 C 1.54591 * 110.31150 * 54.18411 * 3 2 1 9 9 C 1.54929 * 102.92459 * 263.04003 * 8 3 2 10 10 N 1.48537 * 103.22853 * 322.58538 * 9 8 3 11 11 C 1.46900 * 111.00044 * 159.71903 * 10 9 8 12 12 H 1.08998 * 109.47148 * 294.64851 * 11 10 9 13 13 C 1.52993 * 109.47332 * 54.65174 * 11 10 9 14 14 C 1.50704 * 109.46791 * 174.64838 * 11 10 9 15 15 O 1.21280 * 120.00349 * 0.02562 * 14 11 10 16 16 N 1.34782 * 119.99778 * 179.97438 * 14 11 10 17 17 C 1.46495 * 119.99842 * 0.02562 * 16 14 11 18 18 C 1.46496 * 119.99566 * 180.02562 * 16 14 11 19 19 C 1.50702 * 109.47195 * 269.99650 * 18 16 14 20 20 H 1.07998 * 119.99852 * 0.02562 * 19 18 16 21 21 C 1.37874 * 120.00506 * 180.02562 * 19 18 16 22 22 N 1.31519 * 119.99610 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00441 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.46934 * 60.00110 * 23 21 19 25 25 H 1.48500 * 109.47331 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47182 * 300.00335 * 23 21 19 27 27 C 1.47901 * 105.81755 * 39.20616 * 10 9 8 28 28 H 1.09002 * 109.47338 * 173.74331 * 1 2 3 29 29 H 1.09002 * 109.47252 * 293.74119 * 1 2 3 30 30 H 1.09001 * 109.47641 * 53.74400 * 1 2 3 31 31 H 1.09003 * 110.72462 * 21.40240 * 8 3 2 32 32 H 1.09003 * 110.72318 * 144.67857 * 8 3 2 33 33 H 1.09002 * 110.66951 * 204.15395 * 9 8 3 34 34 H 1.09001 * 110.67081 * 81.01702 * 9 8 3 35 35 H 1.09008 * 109.46969 * 306.99368 * 13 11 10 36 36 H 1.09001 * 109.47243 * 66.99262 * 13 11 10 37 37 H 1.08997 * 109.47205 * 186.99253 * 13 11 10 38 38 H 1.08997 * 109.47198 * 89.99848 * 17 16 14 39 39 H 1.09004 * 109.47328 * 329.99280 * 17 16 14 40 40 H 1.09005 * 109.47034 * 209.99878 * 17 16 14 41 41 H 1.08992 * 109.47595 * 30.00364 * 18 16 14 42 42 H 1.09001 * 109.46878 * 150.00193 * 18 16 14 43 43 H 0.96999 * 119.99672 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.91832 * 94.02382 * 27 10 9 45 45 H 1.09003 * 109.92053 * 215.11927 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5343 1.2094 0.0918 5 9 4.0851 2.4952 0.0650 6 9 3.8904 0.5744 1.2865 7 9 4.0212 0.4709 -0.9920 8 6 1.4533 2.1408 1.1756 9 6 0.3218 2.9640 0.5105 10 7 0.8788 3.2880 -0.8278 11 6 -0.1904 3.6390 -1.7721 12 1 -0.8218 2.7678 -1.9462 13 6 -1.0353 4.7726 -1.1875 14 6 0.4182 4.0871 -3.0759 15 8 1.6237 4.1112 -3.2059 16 7 -0.3774 4.4601 -4.0979 17 6 -1.8336 4.4305 -3.9411 18 6 0.2142 4.8952 -5.3656 19 6 0.4405 6.3847 -5.3293 20 1 0.1710 6.9505 -4.4498 21 6 0.9916 7.0250 -6.4189 22 7 1.3193 6.3360 -7.4901 23 14 1.2727 8.8711 -6.3737 24 1 2.1943 9.2043 -5.2578 25 1 1.8723 9.3122 -7.6587 26 1 -0.0243 9.5645 -6.1683 27 6 1.5986 2.0738 -1.2696 28 1 -0.3634 -1.0215 -0.1120 29 1 -0.3634 0.4137 0.9407 30 1 -0.3634 0.6077 -0.8287 31 1 1.0518 1.4917 1.9539 32 1 2.2226 2.7988 1.5797 33 1 0.1251 3.8748 1.0761 34 1 -0.5844 2.3657 0.4154 35 1 -1.3735 4.4959 -0.1888 36 1 -0.4349 5.6805 -1.1291 37 1 -1.8995 4.9491 -1.8278 38 1 -2.1778 5.3926 -3.5616 39 1 -2.1075 3.6436 -3.2383 40 1 -2.2991 4.2333 -4.9068 41 1 1.1664 4.3865 -5.5157 42 1 -0.4616 4.6502 -6.1849 43 1 1.7067 6.7866 -8.2568 44 1 0.9423 1.4551 -1.8816 45 1 2.4836 2.3540 -1.8409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880302136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:45 Heat of formation + Delta-G solvation = -225.243261 kcal Electronic energy + Delta-G solvation = -32157.520818 eV Core-core repulsion = 27374.412923 eV Total energy + Delta-G solvation = -4783.107896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.26004 -48.76498 -48.73169 -41.76834 -40.40438 -37.68960 -36.58452 -34.93774 -33.95343 -31.10368 -30.71191 -29.47188 -27.57628 -27.51236 -26.12897 -25.73445 -24.19525 -22.23265 -21.89429 -20.07398 -19.81928 -19.41819 -19.17534 -18.67728 -18.07730 -17.70633 -17.09483 -16.77456 -16.41106 -16.11256 -15.86148 -15.76470 -15.56728 -15.54451 -15.15544 -14.93565 -14.90417 -14.83202 -14.69058 -14.48899 -14.12975 -14.03153 -13.76792 -13.47854 -13.41162 -13.27058 -13.10796 -13.08616 -12.96908 -12.72071 -12.53354 -12.41521 -12.37924 -12.27010 -12.10656 -11.88000 -11.69626 -10.90619 -10.64089 -10.49065 -9.47121 -9.38920 -8.22268 -6.36826 1.31861 1.35550 1.40519 1.47338 1.84144 2.15839 2.23647 2.39937 2.60175 2.61315 2.88584 3.07343 3.12887 3.41122 3.43923 3.68119 3.88164 3.96712 3.99199 4.10522 4.22823 4.38812 4.40857 4.43823 4.58790 4.62712 4.69988 4.73046 4.76094 4.82291 4.86363 4.91498 4.95071 5.02673 5.21407 5.28963 5.53682 5.56947 5.75364 5.83342 5.89574 6.06497 6.70702 6.80994 7.29365 7.52547 8.84524 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.003375 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.893245 B = 8294.967614 C = 8988.788632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.375 6.375 3 C 0.070 3.930 4 C 0.470 3.530 5 F -0.173 7.173 6 F -0.172 7.172 7 F -0.187 7.187 8 C -0.141 4.141 9 C 0.034 3.966 10 N -0.510 5.510 11 C 0.070 3.930 12 H 0.094 0.906 13 C -0.147 4.147 14 C 0.495 3.505 15 O -0.582 6.582 16 N -0.609 5.609 17 C 0.077 3.923 18 C 0.262 3.738 19 C -0.540 4.540 20 H 0.053 0.947 21 C 0.007 3.993 22 N -0.930 5.930 23 Si 0.966 3.034 24 H -0.280 1.280 25 H -0.279 1.279 26 H -0.257 1.257 27 C 0.027 3.973 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.127 0.873 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.043 0.957 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.068 0.932 41 H -0.007 1.007 42 H 0.024 0.976 43 H 0.267 0.733 44 H 0.067 0.933 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.773 -11.944 21.339 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.294 6.294 3 C 0.027 3.973 4 C 0.415 3.585 5 F -0.155 7.155 6 F -0.154 7.154 7 F -0.169 7.169 8 C -0.178 4.178 9 C -0.092 4.092 10 N -0.236 5.236 11 C -0.041 4.041 12 H 0.111 0.889 13 C -0.204 4.204 14 C 0.283 3.717 15 O -0.461 6.461 16 N -0.342 5.342 17 C -0.065 4.065 18 C 0.140 3.860 19 C -0.579 4.579 20 H 0.071 0.929 21 C -0.192 4.192 22 N -0.570 5.570 23 Si 0.790 3.210 24 H -0.206 1.206 25 H -0.204 1.204 26 H -0.182 1.182 27 C -0.101 4.101 28 H 0.132 0.868 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.145 0.855 32 H 0.111 0.889 33 H 0.133 0.867 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.011 0.989 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.622 -11.637 21.086 25.581 hybrid contribution 0.558 0.430 -1.079 1.289 sum -8.064 -11.207 20.006 24.308 Atomic orbital electron populations 1.23336 0.77517 1.05052 1.02092 1.87973 1.23313 1.23018 1.95058 1.23246 0.87706 0.87168 0.99158 1.20073 0.91134 0.73518 0.73760 1.93238 1.87194 1.38888 1.96156 1.93186 1.93482 1.82211 1.46487 1.93182 1.90078 1.77594 1.56001 1.23241 1.00111 0.98570 0.95919 1.23621 0.96224 1.01205 0.88133 1.64520 1.24087 1.31999 1.02970 1.21795 0.92083 1.00878 0.89389 0.88860 1.22090 0.99096 0.95915 1.03331 1.21232 0.86826 0.77695 0.85972 1.90652 1.16987 1.55618 1.82842 1.48113 1.08088 1.64148 1.13805 1.22112 0.78345 1.02669 1.03378 1.18725 0.92612 0.93783 0.80882 1.21664 1.41785 0.93827 1.00585 0.92872 1.25850 0.94793 1.03616 0.94898 1.70047 1.43423 1.37946 1.05543 0.85497 0.79009 0.79235 0.77252 1.20602 1.20402 1.18158 1.23216 1.00854 0.90843 0.95222 0.86806 0.90280 0.93511 0.85499 0.88878 0.86688 0.89759 0.87784 0.93762 0.88905 0.91685 0.88187 0.91272 0.98925 0.95793 0.92467 0.91516 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.18 113.37 1.04 1.22 16 2 O -0.37 -7.79 10.31 -148.98 -1.54 -9.33 16 3 C 0.07 1.61 0.69 -9.92 -0.01 1.60 16 4 C 0.47 12.98 2.21 71.98 0.16 13.14 16 5 F -0.17 -5.35 16.09 44.97 0.72 -4.63 16 6 F -0.17 -4.31 17.07 44.97 0.77 -3.55 16 7 F -0.19 -5.89 16.99 44.97 0.76 -5.13 16 8 C -0.14 -2.25 5.37 31.79 0.17 -2.08 16 9 C 0.03 0.51 4.65 86.65 0.40 0.91 16 10 N -0.51 -13.44 4.82 -862.24 -4.16 -17.59 16 11 C 0.07 1.83 1.44 44.17 0.06 1.90 16 12 H 0.09 1.83 7.13 -2.39 -0.02 1.81 16 13 C -0.15 -2.93 8.66 71.98 0.62 -2.31 16 14 C 0.49 20.39 6.86 87.66 0.60 20.99 16 15 O -0.58 -30.87 14.51 -3.03 -0.04 -30.91 16 16 N -0.61 -25.33 2.86 -851.14 -2.43 -27.76 16 17 C 0.08 2.11 8.83 127.77 1.13 3.24 16 18 C 0.26 14.23 5.20 85.63 0.45 14.67 16 19 C -0.54 -31.44 9.39 25.60 0.24 -31.20 16 20 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 21 C 0.01 0.42 5.46 84.65 0.46 0.88 16 22 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 23 Si 0.97 45.53 29.54 68.60 2.03 47.55 16 24 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 27 C 0.03 0.79 4.20 86.45 0.36 1.15 16 28 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 0.54 6.09 -2.39 -0.01 0.52 16 30 H 0.05 0.59 5.90 -2.39 -0.01 0.57 16 31 H 0.13 1.27 7.23 -2.39 -0.02 1.25 16 32 H 0.09 1.63 7.36 -2.39 -0.02 1.62 16 33 H 0.12 1.37 7.50 -2.39 -0.02 1.35 16 34 H 0.08 0.75 6.01 -2.39 -0.01 0.73 16 35 H 0.10 1.22 6.45 -2.38 -0.02 1.21 16 36 H 0.04 1.16 8.13 -2.39 -0.02 1.14 16 37 H 0.09 1.59 4.75 -2.39 -0.01 1.58 16 38 H 0.06 1.66 7.11 -2.39 -0.02 1.64 16 39 H 0.10 1.81 5.93 -2.39 -0.01 1.79 16 40 H 0.07 1.88 7.89 -2.38 -0.02 1.86 16 41 H -0.01 -0.47 7.42 -2.39 -0.02 -0.49 16 42 H 0.02 1.32 7.89 -2.39 -0.02 1.30 16 43 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 44 H 0.07 1.85 6.00 -2.39 -0.01 1.84 16 45 H 0.06 2.48 6.50 -2.39 -0.02 2.46 16 Total: -1.00 -81.54 358.49 3.12 -78.41 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 1.03 Total: 5.64 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 5.69 Total: 24.11 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -6.30 Total: -102.18 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -1.58 Total: -40.24 kcal Atomic # 9 Polarization: -15.55 SS G_CDS: 2.25 Total: -13.30 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -81.54 3.12 -78.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880302136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.831 kcal (2) G-P(sol) polarization free energy of solvation -81.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds