Wall clock time and date at job start Tue Mar 31 2020 21:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99992 * 2 1 4 4 C 1.53001 * 110.87315 * 297.61039 * 3 2 1 5 5 F 1.39902 * 109.46599 * 182.39198 * 4 3 2 6 6 F 1.39897 * 109.47208 * 302.38910 * 4 3 2 7 7 F 1.39901 * 109.46928 * 62.39627 * 4 3 2 8 8 C 1.55137 * 110.98758 * 61.45804 * 3 2 1 9 9 C 1.54317 * 103.01858 * 82.47689 * 8 3 2 10 10 N 1.47437 * 107.23633 * 22.27885 * 9 8 3 11 11 C 1.46897 * 110.99957 * 123.25589 * 10 9 8 12 12 H 1.09001 * 109.47750 * 297.11839 * 11 10 9 13 13 C 1.53002 * 109.46912 * 57.11659 * 11 10 9 14 14 C 1.50697 * 109.47537 * 177.11509 * 11 10 9 15 15 O 1.21282 * 119.99752 * 0.02562 * 14 11 10 16 16 N 1.34774 * 120.00726 * 180.02562 * 14 11 10 17 17 C 1.46506 * 119.99623 * 359.72559 * 16 14 11 18 18 C 1.46498 * 120.00322 * 180.02562 * 16 14 11 19 19 C 1.50703 * 109.46900 * 90.00032 * 18 16 14 20 20 H 1.07999 * 120.00168 * 359.97438 * 19 18 16 21 21 C 1.37877 * 119.99566 * 179.97438 * 19 18 16 22 22 N 1.31513 * 120.00053 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00257 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47479 * 89.99700 * 23 21 19 25 25 H 1.48498 * 109.46976 * 209.99671 * 23 21 19 26 26 H 1.48499 * 109.46699 * 329.99373 * 23 21 19 27 27 C 1.47849 * 108.56586 * 0.99321 * 10 9 8 28 28 H 1.09001 * 109.47053 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46814 * 299.99446 * 1 2 3 30 30 H 1.09000 * 109.47269 * 59.99876 * 1 2 3 31 31 H 1.09003 * 110.70795 * 324.08828 * 8 3 2 32 32 H 1.08998 * 110.85112 * 200.92941 * 8 3 2 33 33 H 1.09002 * 109.88560 * 262.87078 * 9 8 3 34 34 H 1.09003 * 110.02215 * 141.76523 * 9 8 3 35 35 H 1.08999 * 109.47023 * 66.78353 * 13 11 10 36 36 H 1.09007 * 109.47283 * 186.78333 * 13 11 10 37 37 H 1.08998 * 109.47676 * 306.78255 * 13 11 10 38 38 H 1.08994 * 109.47310 * 89.99867 * 17 16 14 39 39 H 1.08997 * 109.46911 * 210.00430 * 17 16 14 40 40 H 1.09001 * 109.46623 * 330.00192 * 17 16 14 41 41 H 1.08998 * 109.46813 * 209.99744 * 18 16 14 42 42 H 1.08997 * 109.47331 * 329.99574 * 18 16 14 43 43 H 0.96998 * 120.00309 * 180.02562 * 22 21 19 44 44 H 1.09000 * 110.37071 * 94.73081 * 27 10 9 45 45 H 1.09001 * 110.37215 * 217.06932 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.6267 2.0730 -1.2668 5 9 2.2541 3.3234 -1.2622 6 9 2.0363 1.3499 -2.3922 7 9 0.2391 2.2475 -1.3041 8 6 1.6040 2.0946 1.2724 9 6 2.6037 1.5846 2.3317 10 7 3.7719 1.0500 1.6083 11 6 5.0077 1.7182 2.0373 12 1 4.9523 2.7784 1.7902 13 6 5.1771 1.5552 3.5492 14 6 6.1854 1.0985 1.3302 15 8 6.0123 0.1900 0.5457 16 7 7.4312 1.5539 1.5696 17 6 7.6398 2.6553 2.5128 18 6 8.5759 0.9518 0.8817 19 6 8.8279 1.6851 -0.4105 20 1 8.1981 2.5162 -0.6915 21 6 9.8626 1.2949 -1.2340 22 7 10.0823 1.9345 -2.3619 23 14 10.9516 -0.1431 -0.7483 24 1 10.3780 -1.4025 -1.2868 25 1 12.3139 0.0578 -1.3044 26 1 11.0288 -0.2275 0.7322 27 6 3.5494 1.2285 0.1576 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.5805 1.8574 1.5626 32 1 1.7205 3.1672 1.1174 33 1 2.1432 0.7959 2.9267 34 1 2.9122 2.4053 2.9793 35 1 5.3532 0.5054 3.7839 36 1 6.0262 2.1501 3.8859 37 1 4.2729 1.8939 4.0548 38 1 7.7911 2.2525 3.5142 39 1 8.5183 3.2275 2.2146 40 1 6.7650 3.3056 2.5111 41 1 9.4589 1.0211 1.5170 42 1 8.3624 -0.0958 0.6694 43 1 10.8100 1.6598 -2.9415 44 1 4.0128 2.1531 -0.1865 45 1 3.9453 0.3762 -0.3947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880302137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:49 Heat of formation + Delta-G solvation = -190.691089 kcal Electronic energy + Delta-G solvation = -32189.551853 eV Core-core repulsion = 27407.942252 eV Total energy + Delta-G solvation = -4781.609601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.35145 -47.92310 -47.71158 -40.41653 -38.98244 -36.88814 -34.96411 -33.33019 -32.34156 -29.93300 -29.68439 -28.13931 -26.90475 -26.20401 -25.25625 -24.17108 -22.35643 -21.25151 -20.70479 -19.00183 -18.59808 -18.42693 -18.03573 -17.06556 -16.91760 -16.23908 -15.81584 -15.62523 -15.25171 -14.90076 -14.69911 -14.61765 -14.52474 -14.32802 -14.14345 -13.92223 -13.89895 -13.65505 -13.42780 -13.37396 -13.12913 -12.93263 -12.43669 -12.37835 -12.26073 -12.10573 -11.89480 -11.72393 -11.58925 -11.42415 -11.31363 -11.16610 -11.03267 -10.81673 -10.50304 -10.13451 -10.01539 -9.53637 -8.98488 -8.57828 -8.27847 -7.69314 -6.07792 -4.06766 2.38700 3.05358 3.30428 3.33329 3.35825 3.37704 3.39116 3.55061 3.60401 3.93906 4.12920 4.25601 4.36898 4.40892 4.74554 4.86598 4.92298 4.95044 5.10470 5.12918 5.13124 5.26077 5.30891 5.34717 5.42897 5.51036 5.51501 5.64278 5.68575 5.75586 5.83728 6.05194 6.10792 6.23191 6.62660 6.66227 6.83137 6.87085 6.99583 7.34598 7.61859 8.24380 8.47524 8.93412 9.00188 9.52548 11.05569 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014474 B = 0.003686 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.007983 B = 7594.029040 C = 8555.480789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.327 6.327 3 C 0.064 3.936 4 C 0.436 3.564 5 F -0.175 7.175 6 F -0.169 7.169 7 F -0.182 7.182 8 C -0.167 4.167 9 C 0.050 3.950 10 N -0.494 5.494 11 C 0.056 3.944 12 H 0.065 0.935 13 C -0.152 4.152 14 C 0.511 3.489 15 O -0.521 6.521 16 N -0.597 5.597 17 C 0.081 3.919 18 C 0.217 3.783 19 C -0.529 4.529 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.897 5.897 23 Si 0.876 3.124 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.266 1.266 27 C 0.069 3.931 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.030 0.970 42 H 0.037 0.963 43 H 0.264 0.736 44 H 0.071 0.929 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.630 2.621 11.878 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.244 6.244 3 C 0.020 3.980 4 C 0.381 3.619 5 F -0.157 7.157 6 F -0.150 7.150 7 F -0.164 7.164 8 C -0.206 4.206 9 C -0.078 4.078 10 N -0.219 5.219 11 C -0.055 4.055 12 H 0.083 0.917 13 C -0.209 4.209 14 C 0.297 3.703 15 O -0.396 6.396 16 N -0.330 5.330 17 C -0.063 4.063 18 C 0.096 3.904 19 C -0.568 4.568 20 H 0.091 0.909 21 C -0.130 4.130 22 N -0.536 5.536 23 Si 0.703 3.297 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.191 1.191 27 C -0.058 4.058 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.397 1.442 11.390 22.540 hybrid contribution 0.218 0.685 -0.433 0.839 sum -19.179 2.127 10.957 22.191 Atomic orbital electron populations 1.23372 0.80735 1.04074 1.01650 1.88246 1.20093 1.22213 1.93891 1.23833 0.98703 0.85539 0.89884 1.21279 0.74453 0.78660 0.87550 1.93196 1.82195 1.43549 1.96754 1.93243 1.89948 1.77287 1.54497 1.93096 1.30974 1.95313 1.96982 1.23461 1.02125 1.00607 0.94397 1.22858 0.89969 0.99198 0.95768 1.63421 1.00665 1.54710 1.03096 1.21877 0.90210 0.96511 0.96936 0.91741 1.22092 1.02766 1.03930 0.92162 1.20024 0.83634 0.84015 0.82665 1.90671 1.84375 1.29464 1.35078 1.47773 1.07164 1.34922 1.43117 1.21816 1.02413 0.89884 0.92157 1.19658 0.82897 0.95000 0.92800 1.21319 1.15244 1.17130 1.03081 0.90870 1.24853 0.97132 0.96375 0.94599 1.69895 1.31212 1.40952 1.11531 0.86847 0.80029 0.83524 0.79269 1.19852 1.21114 1.19064 1.23146 0.87320 1.04643 0.90688 0.88574 0.93092 0.92022 0.88700 0.89188 0.89483 0.91320 0.91206 0.90380 0.91713 0.93285 0.90605 0.92244 0.95242 0.94458 0.92563 0.91066 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 10.10 101.05 1.02 1.00 16 2 O -0.33 -4.31 10.42 -35.23 -0.37 -4.68 16 3 C 0.06 0.81 0.52 -88.48 -0.05 0.77 16 4 C 0.44 5.73 2.34 37.16 0.09 5.82 16 5 F -0.18 -2.38 15.75 2.25 0.04 -2.34 16 6 F -0.17 -2.56 17.17 2.25 0.04 -2.53 16 7 F -0.18 -2.09 14.03 2.25 0.03 -2.05 16 8 C -0.17 -1.60 5.73 -24.91 -0.14 -1.74 16 9 C 0.05 0.50 6.05 -2.84 -0.02 0.49 16 10 N -0.49 -7.12 4.81 -224.68 -1.08 -8.20 16 11 C 0.06 0.82 1.32 -68.87 -0.09 0.73 16 12 H 0.07 0.86 7.29 -51.93 -0.38 0.48 16 13 C -0.15 -1.68 8.69 37.16 0.32 -1.35 16 14 C 0.51 10.25 6.82 -10.99 -0.07 10.17 16 15 O -0.52 -12.66 14.07 5.56 0.08 -12.58 16 16 N -0.60 -12.02 2.86 -182.96 -0.52 -12.55 16 17 C 0.08 1.19 8.80 59.85 0.53 1.71 16 18 C 0.22 5.27 4.23 -5.19 -0.02 5.25 16 19 C -0.53 -15.15 9.94 -34.44 -0.34 -15.49 16 20 H 0.07 2.30 8.06 -52.49 -0.42 1.87 16 21 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 22 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 23 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 24 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 27 C 0.07 1.10 4.53 -2.30 -0.01 1.09 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.38 6.21 -51.93 -0.32 0.05 16 30 H 0.06 0.58 5.47 -51.93 -0.28 0.29 16 31 H 0.09 0.72 6.04 -51.93 -0.31 0.40 16 32 H 0.09 0.79 7.51 -51.93 -0.39 0.40 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.57 6.18 -51.93 -0.32 0.25 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.76 4.75 -51.93 -0.25 0.51 16 37 H 0.06 0.55 6.14 -51.93 -0.32 0.23 16 38 H 0.05 0.58 7.09 -51.93 -0.37 0.22 16 39 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 40 H 0.06 0.72 5.95 -51.93 -0.31 0.41 16 41 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 42 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.07 1.16 6.90 -51.93 -0.36 0.81 16 45 H 0.12 2.36 7.06 -51.93 -0.37 2.00 16 LS Contribution 355.23 15.07 5.35 5.35 Total: -1.00 -34.57 355.23 -5.20 -39.76 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.98 Total: -0.64 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 1.11 Total: 10.46 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -0.83 Total: -47.73 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.29 Total: -17.26 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 0.11 Total: -6.92 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.57 -5.20 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880302137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.927 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds