Wall clock time and date at job start Tue Mar 31 2020 21:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99992 * 2 1 4 4 C 1.53001 * 110.87315 * 297.61039 * 3 2 1 5 5 F 1.39902 * 109.46599 * 182.39198 * 4 3 2 6 6 F 1.39897 * 109.47208 * 302.38910 * 4 3 2 7 7 F 1.39901 * 109.46928 * 62.39627 * 4 3 2 8 8 C 1.55137 * 110.98758 * 61.45804 * 3 2 1 9 9 C 1.54317 * 103.01858 * 82.47689 * 8 3 2 10 10 N 1.47437 * 107.23633 * 22.27885 * 9 8 3 11 11 C 1.46897 * 110.99957 * 123.25589 * 10 9 8 12 12 H 1.09001 * 109.47750 * 297.11839 * 11 10 9 13 13 C 1.53002 * 109.46912 * 57.11659 * 11 10 9 14 14 C 1.50697 * 109.47537 * 177.11509 * 11 10 9 15 15 O 1.21282 * 119.99752 * 0.02562 * 14 11 10 16 16 N 1.34774 * 120.00726 * 180.02562 * 14 11 10 17 17 C 1.46506 * 119.99623 * 359.72559 * 16 14 11 18 18 C 1.46498 * 120.00322 * 180.02562 * 16 14 11 19 19 C 1.50703 * 109.46900 * 90.00032 * 18 16 14 20 20 H 1.07999 * 120.00168 * 359.97438 * 19 18 16 21 21 C 1.37877 * 119.99566 * 179.97438 * 19 18 16 22 22 N 1.31513 * 120.00053 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00257 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47479 * 89.99700 * 23 21 19 25 25 H 1.48498 * 109.46976 * 209.99671 * 23 21 19 26 26 H 1.48499 * 109.46699 * 329.99373 * 23 21 19 27 27 C 1.47849 * 108.56586 * 0.99321 * 10 9 8 28 28 H 1.09001 * 109.47053 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46814 * 299.99446 * 1 2 3 30 30 H 1.09000 * 109.47269 * 59.99876 * 1 2 3 31 31 H 1.09003 * 110.70795 * 324.08828 * 8 3 2 32 32 H 1.08998 * 110.85112 * 200.92941 * 8 3 2 33 33 H 1.09002 * 109.88560 * 262.87078 * 9 8 3 34 34 H 1.09003 * 110.02215 * 141.76523 * 9 8 3 35 35 H 1.08999 * 109.47023 * 66.78353 * 13 11 10 36 36 H 1.09007 * 109.47283 * 186.78333 * 13 11 10 37 37 H 1.08998 * 109.47676 * 306.78255 * 13 11 10 38 38 H 1.08994 * 109.47310 * 89.99867 * 17 16 14 39 39 H 1.08997 * 109.46911 * 210.00430 * 17 16 14 40 40 H 1.09001 * 109.46623 * 330.00192 * 17 16 14 41 41 H 1.08998 * 109.46813 * 209.99744 * 18 16 14 42 42 H 1.08997 * 109.47331 * 329.99574 * 18 16 14 43 43 H 0.96998 * 120.00309 * 180.02562 * 22 21 19 44 44 H 1.09000 * 110.37071 * 94.73081 * 27 10 9 45 45 H 1.09001 * 110.37215 * 217.06932 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.6267 2.0730 -1.2668 5 9 2.2541 3.3234 -1.2622 6 9 2.0363 1.3499 -2.3922 7 9 0.2391 2.2475 -1.3041 8 6 1.6040 2.0946 1.2724 9 6 2.6037 1.5846 2.3317 10 7 3.7719 1.0500 1.6083 11 6 5.0077 1.7182 2.0373 12 1 4.9523 2.7784 1.7902 13 6 5.1771 1.5552 3.5492 14 6 6.1854 1.0985 1.3302 15 8 6.0123 0.1900 0.5457 16 7 7.4312 1.5539 1.5696 17 6 7.6398 2.6553 2.5128 18 6 8.5759 0.9518 0.8817 19 6 8.8279 1.6851 -0.4105 20 1 8.1981 2.5162 -0.6915 21 6 9.8626 1.2949 -1.2340 22 7 10.0823 1.9345 -2.3619 23 14 10.9516 -0.1431 -0.7483 24 1 10.3780 -1.4025 -1.2868 25 1 12.3139 0.0578 -1.3044 26 1 11.0288 -0.2275 0.7322 27 6 3.5494 1.2285 0.1576 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.5805 1.8574 1.5626 32 1 1.7205 3.1672 1.1174 33 1 2.1432 0.7959 2.9267 34 1 2.9122 2.4053 2.9793 35 1 5.3532 0.5054 3.7839 36 1 6.0262 2.1501 3.8859 37 1 4.2729 1.8939 4.0548 38 1 7.7911 2.2525 3.5142 39 1 8.5183 3.2275 2.2146 40 1 6.7650 3.3056 2.5111 41 1 9.4589 1.0211 1.5170 42 1 8.3624 -0.0958 0.6694 43 1 10.8100 1.6598 -2.9415 44 1 4.0128 2.1531 -0.1865 45 1 3.9453 0.3762 -0.3947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880302137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:49 Heat of formation + Delta-G solvation = -217.731924 kcal Electronic energy + Delta-G solvation = -32190.724431 eV Core-core repulsion = 27407.942252 eV Total energy + Delta-G solvation = -4782.782180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.41126 -48.94115 -48.84393 -41.57011 -40.26620 -37.97196 -36.62164 -34.91591 -33.99723 -31.10970 -30.74809 -29.73620 -27.73371 -27.52906 -26.32599 -25.54991 -23.91597 -22.35828 -21.76359 -20.21192 -19.83420 -19.48186 -19.14496 -19.10027 -18.24697 -17.43109 -17.18662 -16.57724 -16.44733 -16.33008 -16.05679 -15.67395 -15.57658 -15.47271 -15.29280 -15.21397 -15.00686 -14.97747 -14.65055 -14.49414 -14.35024 -14.16290 -14.04394 -13.66866 -13.57668 -13.28895 -13.15570 -12.92780 -12.72357 -12.66333 -12.51161 -12.41757 -12.16801 -12.07424 -11.97919 -11.92970 -11.74806 -10.88956 -10.83697 -10.51085 -9.37852 -9.34852 -8.34580 -6.39551 1.31861 1.35801 1.36857 1.44701 1.82846 2.12382 2.21001 2.30664 2.39472 2.55252 2.93598 3.00216 3.01193 3.28279 3.40019 3.66022 3.94138 4.01365 4.06630 4.16258 4.24536 4.30939 4.39370 4.41500 4.55377 4.65059 4.65416 4.73494 4.78205 4.84520 4.84661 4.89983 4.98217 4.99254 5.07752 5.31610 5.46026 5.62015 5.70075 5.82287 5.93933 6.24282 6.61627 6.73245 7.21800 7.46781 8.82471 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014474 B = 0.003686 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.007983 B = 7594.029040 C = 8555.480789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 O -0.353 6.353 3 C 0.068 3.932 4 C 0.433 3.567 5 F -0.180 7.180 6 F -0.188 7.188 7 F -0.169 7.169 8 C -0.157 4.157 9 C 0.049 3.951 10 N -0.512 5.512 11 C 0.066 3.934 12 H 0.081 0.919 13 C -0.144 4.144 14 C 0.497 3.503 15 O -0.578 6.578 16 N -0.606 5.606 17 C 0.073 3.927 18 C 0.225 3.775 19 C -0.535 4.535 20 H 0.027 0.973 21 C 0.011 3.989 22 N -0.946 5.946 23 Si 0.948 3.052 24 H -0.279 1.279 25 H -0.274 1.274 26 H -0.236 1.236 27 C 0.071 3.929 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.052 0.948 42 H 0.016 0.984 43 H 0.268 0.732 44 H 0.054 0.946 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.952 3.098 15.723 26.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 O -0.272 6.272 3 C 0.025 3.975 4 C 0.378 3.622 5 F -0.161 7.161 6 F -0.170 7.170 7 F -0.150 7.150 8 C -0.195 4.195 9 C -0.078 4.078 10 N -0.238 5.238 11 C -0.045 4.045 12 H 0.099 0.901 13 C -0.201 4.201 14 C 0.285 3.715 15 O -0.457 6.457 16 N -0.338 5.338 17 C -0.068 4.068 18 C 0.103 3.897 19 C -0.574 4.574 20 H 0.045 0.955 21 C -0.187 4.187 22 N -0.587 5.587 23 Si 0.771 3.229 24 H -0.205 1.205 25 H -0.200 1.200 26 H -0.158 1.158 27 C -0.057 4.057 28 H 0.128 0.872 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.141 0.859 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.743 1.963 15.296 25.847 hybrid contribution 0.537 0.576 -1.702 1.875 sum -20.206 2.539 13.594 24.485 Atomic orbital electron populations 1.23601 0.78649 1.05426 1.02684 1.88214 1.22375 1.22509 1.94059 1.23740 0.96664 0.86086 0.91026 1.21476 0.74966 0.78451 0.87295 1.93183 1.82413 1.43766 1.96742 1.93202 1.90274 1.77794 1.55693 1.93118 1.29743 1.95246 1.96905 1.23530 1.03473 1.00665 0.91873 1.23036 0.88296 1.00653 0.95771 1.63313 1.02183 1.56006 1.02254 1.21878 0.87734 0.96378 0.98558 0.90113 1.22118 1.05351 1.03584 0.89070 1.21200 0.84923 0.83361 0.82037 1.90645 1.85330 1.32193 1.37573 1.47891 1.06306 1.36084 1.43536 1.22172 1.03414 0.88774 0.92482 1.19302 0.85406 0.93433 0.91586 1.21565 1.14352 1.16137 1.05298 0.95503 1.25854 0.98941 0.99520 0.94395 1.70052 1.32385 1.43148 1.13078 0.85716 0.77829 0.78669 0.80734 1.20507 1.19952 1.15848 1.22803 0.89701 1.01507 0.91692 0.87229 0.90502 0.92386 0.85914 0.87986 0.88182 0.88260 0.92648 0.88613 0.88125 0.89435 0.91702 0.89312 0.93017 0.96631 0.92312 0.92760 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.14 10.10 113.37 1.14 1.00 16 2 O -0.35 -9.18 10.42 -148.98 -1.55 -10.74 16 3 C 0.07 1.71 0.52 -9.41 0.00 1.71 16 4 C 0.43 11.45 2.34 71.98 0.17 11.62 16 5 F -0.18 -4.90 15.75 44.97 0.71 -4.19 16 6 F -0.19 -6.07 17.17 44.97 0.77 -5.30 16 7 F -0.17 -3.66 14.03 44.97 0.63 -3.03 16 8 C -0.16 -2.50 5.73 31.77 0.18 -2.31 16 9 C 0.05 0.81 6.05 86.65 0.52 1.33 16 10 N -0.51 -14.25 4.81 -864.76 -4.16 -18.41 16 11 C 0.07 1.80 1.32 44.17 0.06 1.86 16 12 H 0.08 1.95 7.29 -2.39 -0.02 1.93 16 13 C -0.14 -2.59 8.69 71.98 0.63 -1.96 16 14 C 0.50 20.24 6.82 87.66 0.60 20.84 16 15 O -0.58 -29.83 14.07 -3.04 -0.04 -29.88 16 16 N -0.61 -24.32 2.86 -851.14 -2.43 -26.75 16 17 C 0.07 1.97 8.80 127.77 1.12 3.09 16 18 C 0.23 11.07 4.23 85.63 0.36 11.43 16 19 C -0.53 -31.91 9.94 25.60 0.25 -31.66 16 20 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 21 C 0.01 0.65 5.47 84.65 0.46 1.11 16 22 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 23 Si 0.95 45.24 27.47 68.60 1.88 47.13 16 24 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 27 C 0.07 2.35 4.53 86.77 0.39 2.75 16 28 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 0.86 6.21 -2.39 -0.01 0.85 16 30 H 0.06 1.00 5.47 -2.39 -0.01 0.99 16 31 H 0.12 1.28 6.04 -2.39 -0.01 1.26 16 32 H 0.10 1.41 7.51 -2.39 -0.02 1.39 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 1.07 6.18 -2.39 -0.01 1.05 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.38 4.75 -2.38 -0.01 1.37 16 37 H 0.10 1.12 6.14 -2.39 -0.01 1.11 16 38 H 0.09 1.71 7.09 -2.39 -0.02 1.69 16 39 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 40 H 0.09 1.84 5.95 -2.39 -0.01 1.83 16 41 H 0.05 2.31 7.13 -2.39 -0.02 2.29 16 42 H 0.02 0.83 6.85 -2.39 -0.02 0.82 16 43 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 44 H 0.05 1.90 6.90 -2.39 -0.02 1.88 16 45 H 0.07 3.07 7.06 -2.39 -0.02 3.05 16 Total: -1.00 -83.41 355.23 2.98 -80.43 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.98 Total: 10.49 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 5.89 Total: 20.80 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -6.29 Total: -105.71 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -1.59 Total: -40.61 kcal Atomic # 9 Polarization: -14.63 SS G_CDS: 2.11 Total: -12.52 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.13 kcal Total: -83.41 2.98 -80.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880302137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.303 kcal (2) G-P(sol) polarization free energy of solvation -83.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds