Wall clock time and date at job start Tue Mar 31 2020 21:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 114.00333 * 2 1 4 4 C 1.53001 * 110.90186 * 297.58690 * 3 2 1 5 5 F 1.39897 * 109.47156 * 182.40878 * 4 3 2 6 6 F 1.39903 * 109.46895 * 302.41208 * 4 3 2 7 7 F 1.39892 * 109.47413 * 62.40776 * 4 3 2 8 8 C 1.55141 * 110.98908 * 61.44849 * 3 2 1 9 9 C 1.54319 * 103.01883 * 82.44289 * 8 3 2 10 10 N 1.47449 * 107.23211 * 22.28169 * 9 8 3 11 11 C 1.46900 * 110.99724 * 123.25881 * 10 9 8 12 12 H 1.09001 * 109.47132 * 299.87259 * 11 10 9 13 13 C 1.53004 * 109.47043 * 179.87368 * 11 10 9 14 14 C 1.50694 * 109.47375 * 59.87434 * 11 10 9 15 15 O 1.21278 * 119.99949 * 14.61092 * 14 11 10 16 16 N 1.34776 * 120.00245 * 194.61038 * 14 11 10 17 17 C 1.46498 * 119.99952 * 3.51409 * 16 14 11 18 18 C 1.46499 * 120.00236 * 183.50780 * 16 14 11 19 19 C 1.50699 * 109.47027 * 89.99999 * 18 16 14 20 20 H 1.07995 * 120.00009 * 0.02562 * 19 18 16 21 21 C 1.37882 * 119.99862 * 180.02562 * 19 18 16 22 22 N 1.31510 * 120.00258 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99793 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47040 * 89.99802 * 23 21 19 25 25 H 1.48501 * 109.46812 * 209.99824 * 23 21 19 26 26 H 1.48504 * 109.47161 * 330.00031 * 23 21 19 27 27 C 1.47846 * 108.56834 * 0.99138 * 10 9 8 28 28 H 1.09001 * 109.46737 * 60.00374 * 1 2 3 29 29 H 1.08999 * 109.47361 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47518 * 300.00609 * 1 2 3 31 31 H 1.09004 * 110.70675 * 324.05767 * 8 3 2 32 32 H 1.09004 * 110.70249 * 200.82596 * 8 3 2 33 33 H 1.08999 * 109.89150 * 262.87935 * 9 8 3 34 34 H 1.08995 * 110.02572 * 141.76373 * 9 8 3 35 35 H 1.09000 * 109.47097 * 176.50384 * 13 11 10 36 36 H 1.09002 * 109.47123 * 56.50307 * 13 11 10 37 37 H 1.08996 * 109.46908 * 296.51076 * 13 11 10 38 38 H 1.09000 * 109.47414 * 84.59503 * 17 16 14 39 39 H 1.08997 * 109.47149 * 204.60213 * 17 16 14 40 40 H 1.09002 * 109.46966 * 324.59280 * 17 16 14 41 41 H 1.09001 * 109.47601 * 210.00691 * 18 16 14 42 42 H 1.09003 * 109.47299 * 330.00167 * 18 16 14 43 43 H 0.96999 * 120.00541 * 180.02562 * 22 21 19 44 44 H 1.08997 * 110.37553 * 94.73203 * 27 10 9 45 45 H 1.08992 * 110.37141 * 217.07482 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6276 2.0734 -1.2668 5 9 2.2556 3.3235 -1.2619 6 9 2.0372 1.3501 -2.3922 7 9 0.2402 2.2486 -1.3048 8 6 1.6039 2.0947 1.2723 9 6 2.6028 1.5841 2.3320 10 7 3.7711 1.0490 1.6090 11 6 5.0071 1.7165 2.0387 12 1 4.9323 2.7849 1.8361 13 6 6.1950 1.1336 1.2705 14 6 5.2084 1.4981 3.5161 15 8 4.5675 0.6476 4.0962 16 7 6.1007 2.2481 4.1927 17 6 6.8189 3.3266 3.5092 18 6 6.3524 1.9848 5.6117 19 6 7.4710 0.9839 5.7462 20 1 7.9470 0.5843 4.8631 21 6 7.8865 0.5785 6.9968 22 7 7.3072 1.0655 8.0723 23 14 9.2736 -0.6616 7.1635 24 1 10.5721 0.0550 7.2372 25 1 9.0778 -1.4598 8.4004 26 1 9.2734 -1.5659 5.9855 27 6 3.5492 1.2277 0.1582 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.5800 1.8581 1.5621 32 1 1.7230 3.1668 1.1152 33 1 2.1417 0.7956 2.9267 34 1 2.9115 2.4045 2.9798 35 1 7.1032 1.6709 1.5436 36 1 6.0206 1.2359 0.1994 37 1 6.3074 0.0788 1.5211 38 1 6.2071 4.2287 3.5111 39 1 7.7577 3.5231 4.0270 40 1 7.0263 3.0304 2.4810 41 1 6.6335 2.9130 6.1092 42 1 5.4494 1.5846 6.0728 43 1 7.5997 0.7806 8.9521 44 1 4.0132 2.1521 -0.1856 45 1 3.9449 0.3753 -0.3939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880302138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:53 Heat of formation + Delta-G solvation = -199.223641 kcal Electronic energy + Delta-G solvation = -31797.462564 eV Core-core repulsion = 27015.482964 eV Total energy + Delta-G solvation = -4781.979600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.56235 -48.11574 -47.95598 -40.42148 -38.94433 -36.85980 -34.78664 -33.29739 -32.40755 -30.28408 -29.20016 -27.66075 -26.88190 -26.23633 -25.68567 -23.79367 -22.53369 -21.38204 -21.00031 -19.04433 -18.76362 -18.61457 -18.00561 -16.94431 -16.55866 -16.46975 -15.73050 -15.54615 -15.28102 -14.91972 -14.82759 -14.72855 -14.46943 -14.33863 -14.23655 -14.20542 -14.11975 -13.98750 -13.69855 -13.22510 -13.06093 -12.62060 -12.49419 -12.25061 -12.09938 -12.05199 -12.03153 -11.67192 -11.52848 -11.38152 -11.21398 -11.14753 -10.98282 -10.85989 -10.55940 -10.14797 -10.10274 -9.61825 -8.85493 -8.43344 -8.29227 -7.63098 -6.04051 -4.08827 2.19879 2.91638 3.19575 3.30556 3.36654 3.37552 3.38744 3.44837 3.69007 3.78127 4.07456 4.16833 4.28393 4.45462 4.78931 4.87419 4.93535 5.01005 5.04732 5.07647 5.19775 5.25865 5.30658 5.34341 5.40090 5.50227 5.53075 5.64732 5.76263 5.86899 5.89214 6.10179 6.15435 6.37687 6.51934 6.79625 6.84586 7.09978 7.44076 7.54781 7.92656 8.23535 8.41291 8.90888 9.11150 9.56507 11.03963 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.002787 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.390507 B =10043.149413 C =10255.502850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.328 6.328 3 C 0.065 3.935 4 C 0.436 3.564 5 F -0.177 7.177 6 F -0.173 7.173 7 F -0.179 7.179 8 C -0.168 4.168 9 C 0.062 3.938 10 N -0.492 5.492 11 C 0.058 3.942 12 H 0.059 0.941 13 C -0.145 4.145 14 C 0.510 3.490 15 O -0.520 6.520 16 N -0.603 5.603 17 C 0.076 3.924 18 C 0.247 3.753 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.281 1.281 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.063 3.937 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.031 0.969 42 H 0.044 0.956 43 H 0.263 0.737 44 H 0.073 0.927 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.714 5.668 -20.075 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.246 6.246 3 C 0.022 3.978 4 C 0.381 3.619 5 F -0.158 7.158 6 F -0.154 7.154 7 F -0.160 7.160 8 C -0.206 4.206 9 C -0.065 4.065 10 N -0.217 5.217 11 C -0.054 4.054 12 H 0.077 0.923 13 C -0.202 4.202 14 C 0.295 3.705 15 O -0.395 6.395 16 N -0.336 5.336 17 C -0.068 4.068 18 C 0.128 3.872 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.725 3.275 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.065 4.065 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.876 4.517 -19.424 23.211 hybrid contribution 0.437 0.647 -0.285 0.831 sum -11.439 5.165 -19.710 23.366 Atomic orbital electron populations 1.23384 0.80336 1.04279 1.01774 1.88207 1.20476 1.21996 1.93885 1.23767 0.98158 0.85880 0.90008 1.21330 0.74701 0.78560 0.87296 1.93185 1.82200 1.43679 1.96745 1.93215 1.90034 1.77389 1.54796 1.93112 1.30745 1.95263 1.96925 1.23542 1.02686 1.00325 0.94096 1.22701 0.89308 0.99647 0.94875 1.63426 1.01454 1.55449 1.01371 1.21940 0.91722 0.96676 0.95101 0.92324 1.21871 0.96096 1.03221 0.99015 1.19947 0.80793 0.82270 0.87511 1.90681 1.46772 1.32747 1.69311 1.48130 1.39789 1.32304 1.13403 1.21791 0.97676 0.89810 0.97493 1.19283 0.97528 0.96498 0.73937 1.21439 1.17671 1.24969 0.92408 0.92422 1.24937 0.97025 0.96499 0.95647 1.69927 1.41711 1.43910 0.97871 0.86500 0.81910 0.81324 0.77720 1.20681 1.21096 1.19826 1.23117 0.88574 1.03115 0.91707 0.92092 0.88413 0.92763 0.88557 0.89318 0.88716 0.91869 0.90834 0.92008 0.90711 0.94019 0.90511 0.92156 0.95094 0.93811 0.92728 0.90938 0.87608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 10.10 101.05 1.02 1.00 16 2 O -0.33 -3.85 10.42 -35.23 -0.37 -4.21 16 3 C 0.07 0.70 0.52 -88.48 -0.05 0.66 16 4 C 0.44 4.41 2.34 37.16 0.09 4.49 16 5 F -0.18 -1.76 15.74 2.25 0.04 -1.73 16 6 F -0.17 -1.86 17.17 2.25 0.04 -1.83 16 7 F -0.18 -1.73 14.04 2.25 0.03 -1.70 16 8 C -0.17 -1.72 5.74 -24.91 -0.14 -1.86 16 9 C 0.06 0.85 5.53 -2.83 -0.02 0.84 16 10 N -0.49 -7.15 4.75 -224.68 -1.07 -8.22 16 11 C 0.06 0.86 1.24 -68.87 -0.09 0.77 16 12 H 0.06 0.75 7.41 -51.93 -0.38 0.36 16 13 C -0.14 -1.90 8.88 37.16 0.33 -1.57 16 14 C 0.51 10.38 6.00 -10.99 -0.07 10.31 16 15 O -0.52 -12.88 15.13 5.56 0.08 -12.80 16 16 N -0.60 -12.50 2.86 -182.96 -0.52 -13.02 16 17 C 0.08 1.17 9.84 59.85 0.59 1.76 16 18 C 0.25 6.38 5.16 -5.20 -0.03 6.36 16 19 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 20 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 23 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 27 C 0.06 0.72 4.42 -2.30 -0.01 0.71 16 28 H 0.06 0.50 5.48 -51.93 -0.28 0.21 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.42 6.21 -51.93 -0.32 0.10 16 31 H 0.10 0.86 6.05 -51.93 -0.31 0.54 16 32 H 0.09 0.80 7.50 -51.93 -0.39 0.41 16 33 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.06 0.91 7.04 -51.93 -0.37 0.54 16 35 H 0.07 0.92 5.86 -51.93 -0.30 0.61 16 36 H 0.06 0.64 6.92 -51.93 -0.36 0.28 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 1.21 8.03 -51.93 -0.42 0.79 16 40 H 0.06 0.76 4.61 -51.93 -0.24 0.52 16 41 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 42 H 0.04 1.28 7.38 -51.93 -0.38 0.90 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 44 H 0.07 0.71 6.76 -51.93 -0.35 0.36 16 45 H 0.11 1.19 8.12 -51.93 -0.42 0.77 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -33.21 363.00 -5.56 -38.77 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.19 Total: -1.71 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 1.21 Total: 9.97 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -0.85 Total: -47.03 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.28 Total: -17.01 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.11 Total: -5.25 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.21 -5.56 -38.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880302138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.453 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds