Wall clock time and date at job start Tue Mar 31 2020 21:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 114.00333 * 2 1 4 4 C 1.53001 * 110.90186 * 297.58690 * 3 2 1 5 5 F 1.39897 * 109.47156 * 182.40878 * 4 3 2 6 6 F 1.39903 * 109.46895 * 302.41208 * 4 3 2 7 7 F 1.39892 * 109.47413 * 62.40776 * 4 3 2 8 8 C 1.55141 * 110.98908 * 61.44849 * 3 2 1 9 9 C 1.54319 * 103.01883 * 82.44289 * 8 3 2 10 10 N 1.47449 * 107.23211 * 22.28169 * 9 8 3 11 11 C 1.46900 * 110.99724 * 123.25881 * 10 9 8 12 12 H 1.09001 * 109.47132 * 299.87259 * 11 10 9 13 13 C 1.53004 * 109.47043 * 179.87368 * 11 10 9 14 14 C 1.50694 * 109.47375 * 59.87434 * 11 10 9 15 15 O 1.21278 * 119.99949 * 14.61092 * 14 11 10 16 16 N 1.34776 * 120.00245 * 194.61038 * 14 11 10 17 17 C 1.46498 * 119.99952 * 3.51409 * 16 14 11 18 18 C 1.46499 * 120.00236 * 183.50780 * 16 14 11 19 19 C 1.50699 * 109.47027 * 89.99999 * 18 16 14 20 20 H 1.07995 * 120.00009 * 0.02562 * 19 18 16 21 21 C 1.37882 * 119.99862 * 180.02562 * 19 18 16 22 22 N 1.31510 * 120.00258 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99793 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47040 * 89.99802 * 23 21 19 25 25 H 1.48501 * 109.46812 * 209.99824 * 23 21 19 26 26 H 1.48504 * 109.47161 * 330.00031 * 23 21 19 27 27 C 1.47846 * 108.56834 * 0.99138 * 10 9 8 28 28 H 1.09001 * 109.46737 * 60.00374 * 1 2 3 29 29 H 1.08999 * 109.47361 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47518 * 300.00609 * 1 2 3 31 31 H 1.09004 * 110.70675 * 324.05767 * 8 3 2 32 32 H 1.09004 * 110.70249 * 200.82596 * 8 3 2 33 33 H 1.08999 * 109.89150 * 262.87935 * 9 8 3 34 34 H 1.08995 * 110.02572 * 141.76373 * 9 8 3 35 35 H 1.09000 * 109.47097 * 176.50384 * 13 11 10 36 36 H 1.09002 * 109.47123 * 56.50307 * 13 11 10 37 37 H 1.08996 * 109.46908 * 296.51076 * 13 11 10 38 38 H 1.09000 * 109.47414 * 84.59503 * 17 16 14 39 39 H 1.08997 * 109.47149 * 204.60213 * 17 16 14 40 40 H 1.09002 * 109.46966 * 324.59280 * 17 16 14 41 41 H 1.09001 * 109.47601 * 210.00691 * 18 16 14 42 42 H 1.09003 * 109.47299 * 330.00167 * 18 16 14 43 43 H 0.96999 * 120.00541 * 180.02562 * 22 21 19 44 44 H 1.08997 * 110.37553 * 94.73203 * 27 10 9 45 45 H 1.08992 * 110.37141 * 217.07482 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6276 2.0734 -1.2668 5 9 2.2556 3.3235 -1.2619 6 9 2.0372 1.3501 -2.3922 7 9 0.2402 2.2486 -1.3048 8 6 1.6039 2.0947 1.2723 9 6 2.6028 1.5841 2.3320 10 7 3.7711 1.0490 1.6090 11 6 5.0071 1.7165 2.0387 12 1 4.9323 2.7849 1.8361 13 6 6.1950 1.1336 1.2705 14 6 5.2084 1.4981 3.5161 15 8 4.5675 0.6476 4.0962 16 7 6.1007 2.2481 4.1927 17 6 6.8189 3.3266 3.5092 18 6 6.3524 1.9848 5.6117 19 6 7.4710 0.9839 5.7462 20 1 7.9470 0.5843 4.8631 21 6 7.8865 0.5785 6.9968 22 7 7.3072 1.0655 8.0723 23 14 9.2736 -0.6616 7.1635 24 1 10.5721 0.0550 7.2372 25 1 9.0778 -1.4598 8.4004 26 1 9.2734 -1.5659 5.9855 27 6 3.5492 1.2277 0.1582 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.5800 1.8581 1.5621 32 1 1.7230 3.1668 1.1152 33 1 2.1417 0.7956 2.9267 34 1 2.9115 2.4045 2.9798 35 1 7.1032 1.6709 1.5436 36 1 6.0206 1.2359 0.1994 37 1 6.3074 0.0788 1.5211 38 1 6.2071 4.2287 3.5111 39 1 7.7577 3.5231 4.0270 40 1 7.0263 3.0304 2.4810 41 1 6.6335 2.9130 6.1092 42 1 5.4494 1.5846 6.0728 43 1 7.5997 0.7806 8.9521 44 1 4.0132 2.1521 -0.1856 45 1 3.9449 0.3753 -0.3939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880302138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:52 Heat of formation + Delta-G solvation = -223.452798 kcal Electronic energy + Delta-G solvation = -31798.513219 eV Core-core repulsion = 27015.482964 eV Total energy + Delta-G solvation = -4783.030255 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.33270 -48.87147 -48.73914 -41.54756 -40.23482 -37.93070 -36.52420 -34.89170 -33.99834 -31.21624 -30.42068 -29.34380 -27.63546 -27.49744 -26.82627 -25.44039 -23.87008 -22.44686 -22.00859 -20.05699 -19.80892 -19.40047 -19.05317 -18.65375 -18.10065 -17.73137 -17.06359 -16.52391 -16.42366 -16.14637 -16.05391 -15.62863 -15.56027 -15.42593 -15.31592 -15.12841 -14.91371 -14.87562 -14.85972 -14.52237 -14.15958 -14.06500 -13.73854 -13.53699 -13.41555 -13.23095 -13.08094 -13.02791 -12.92232 -12.70185 -12.56728 -12.54288 -12.38306 -12.17693 -12.03417 -11.95193 -11.68060 -10.88059 -10.63092 -10.46049 -9.41695 -9.33034 -8.21315 -6.36047 1.37110 1.38827 1.40416 1.50588 1.84383 2.14774 2.19387 2.39616 2.47777 2.62834 2.94369 2.98594 3.08234 3.29753 3.42942 3.65491 3.91376 4.04080 4.06903 4.09070 4.27292 4.29576 4.35528 4.36439 4.48465 4.60547 4.67232 4.69857 4.75733 4.80313 4.84023 4.95753 5.00621 5.02848 5.24352 5.30729 5.57272 5.73661 5.78708 5.83091 5.92153 6.07685 6.72173 6.81676 7.30154 7.52737 8.85550 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.002787 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.390507 B =10043.149413 C =10255.502850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.352 6.352 3 C 0.066 3.934 4 C 0.444 3.556 5 F -0.173 7.173 6 F -0.176 7.176 7 F -0.176 7.176 8 C -0.157 4.157 9 C 0.064 3.936 10 N -0.518 5.518 11 C 0.071 3.929 12 H 0.093 0.907 13 C -0.141 4.141 14 C 0.501 3.499 15 O -0.578 6.578 16 N -0.610 5.610 17 C 0.070 3.930 18 C 0.262 3.738 19 C -0.541 4.541 20 H 0.054 0.946 21 C 0.007 3.993 22 N -0.929 5.929 23 Si 0.967 3.033 24 H -0.262 1.262 25 H -0.282 1.282 26 H -0.273 1.273 27 C 0.062 3.938 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.023 0.977 42 H -0.004 1.004 43 H 0.267 0.733 44 H 0.097 0.903 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.032 6.643 -22.668 26.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 O -0.270 6.270 3 C 0.022 3.978 4 C 0.389 3.611 5 F -0.154 7.154 6 F -0.158 7.158 7 F -0.157 7.157 8 C -0.195 4.195 9 C -0.063 4.063 10 N -0.244 5.244 11 C -0.040 4.040 12 H 0.110 0.890 13 C -0.198 4.198 14 C 0.288 3.712 15 O -0.457 6.457 16 N -0.342 5.342 17 C -0.072 4.072 18 C 0.140 3.860 19 C -0.580 4.580 20 H 0.072 0.928 21 C -0.192 4.192 22 N -0.569 5.569 23 Si 0.791 3.209 24 H -0.187 1.187 25 H -0.208 1.208 26 H -0.198 1.198 27 C -0.065 4.065 28 H 0.086 0.914 29 H 0.126 0.874 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.041 0.959 42 H 0.014 0.986 43 H 0.075 0.925 44 H 0.115 0.885 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.181 5.535 -22.063 25.346 hybrid contribution 0.159 0.346 0.533 0.655 sum -11.022 5.880 -21.530 24.892 Atomic orbital electron populations 1.23549 0.79007 1.05307 1.02386 1.88179 1.22032 1.22716 1.94028 1.23717 0.97801 0.85791 0.90451 1.21101 0.74838 0.78460 0.86720 1.93195 1.82149 1.43371 1.96700 1.93213 1.90098 1.77546 1.54911 1.93122 1.30472 1.95232 1.96878 1.23483 1.02222 1.01170 0.92644 1.22522 0.90043 0.98174 0.95577 1.63283 1.01367 1.56385 1.03322 1.21845 0.92821 0.98773 0.90609 0.88984 1.21898 0.95592 1.01377 1.00970 1.21011 0.79390 0.80931 0.89827 1.90646 1.48810 1.35184 1.71051 1.48135 1.40559 1.33794 1.11737 1.22100 0.97343 0.89197 0.98522 1.18725 0.94721 0.95327 0.77219 1.21717 1.18185 1.25561 0.92515 0.92752 1.25858 0.99634 0.98403 0.95292 1.70048 1.43206 1.45221 0.98417 0.85425 0.79222 0.78725 0.77502 1.18719 1.20791 1.19760 1.23192 0.89406 1.04396 0.89513 0.91414 0.87377 0.92098 0.87390 0.87423 0.91869 0.93078 0.89854 0.88297 0.93504 0.91151 0.91195 0.88740 0.95926 0.98562 0.92452 0.88476 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 10.10 113.37 1.14 1.03 16 2 O -0.35 -7.80 10.42 -148.98 -1.55 -9.35 16 3 C 0.07 1.27 0.52 -9.41 0.00 1.27 16 4 C 0.44 7.74 2.34 71.98 0.17 7.91 16 5 F -0.17 -2.84 15.74 44.97 0.71 -2.14 16 6 F -0.18 -3.35 17.17 44.97 0.77 -2.58 16 7 F -0.18 -2.93 14.04 44.97 0.63 -2.30 16 8 C -0.16 -2.94 5.74 31.78 0.18 -2.75 16 9 C 0.06 1.77 5.53 86.65 0.48 2.25 16 10 N -0.52 -14.57 4.75 -864.75 -4.11 -18.68 16 11 C 0.07 2.00 1.24 44.17 0.05 2.05 16 12 H 0.09 1.99 7.41 -2.39 -0.02 1.98 16 13 C -0.14 -3.35 8.88 71.98 0.64 -2.71 16 14 C 0.50 20.70 6.00 87.66 0.53 21.23 16 15 O -0.58 -30.22 15.13 -3.02 -0.05 -30.27 16 16 N -0.61 -25.51 2.86 -851.16 -2.43 -27.95 16 17 C 0.07 2.01 9.84 127.77 1.26 3.27 16 18 C 0.26 14.13 5.16 85.63 0.44 14.57 16 19 C -0.54 -31.23 9.39 25.60 0.24 -30.99 16 20 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 21 C 0.01 0.40 5.46 84.66 0.46 0.87 16 22 N -0.93 -56.49 13.29 21.45 0.28 -56.21 16 23 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 24 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 25 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 26 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 27 C 0.06 1.26 4.42 86.77 0.38 1.64 16 28 H 0.07 0.98 5.48 -2.39 -0.01 0.97 16 29 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 0.87 6.21 -2.39 -0.01 0.86 16 31 H 0.11 1.75 6.05 -2.39 -0.01 1.74 16 32 H 0.11 1.62 7.50 -2.39 -0.02 1.61 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 34 H 0.05 1.49 7.04 -2.39 -0.02 1.47 16 35 H 0.08 1.80 5.86 -2.39 -0.01 1.78 16 36 H 0.10 1.63 6.92 -2.39 -0.02 1.61 16 37 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 2.11 8.03 -2.39 -0.02 2.09 16 40 H 0.09 2.05 4.61 -2.39 -0.01 2.04 16 41 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 42 H 0.00 -0.24 7.38 -2.39 -0.02 -0.25 16 43 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 44 H 0.10 1.49 6.76 -2.39 -0.02 1.47 16 45 H 0.11 2.16 8.12 -2.39 -0.02 2.14 16 Total: -1.00 -76.14 363.00 3.28 -72.86 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 1.02 Total: 9.86 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 5.98 Total: 19.62 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -6.25 Total: -102.83 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -1.60 Total: -39.62 kcal Atomic # 9 Polarization: -9.13 SS G_CDS: 2.11 Total: -7.02 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -76.14 3.28 -72.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880302138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.594 kcal (2) G-P(sol) polarization free energy of solvation -76.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds