Wall clock time and date at job start Tue Mar 31 2020 21:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47321 * 2 1 4 4 C 1.50695 * 109.47543 * 239.99625 * 2 1 3 5 5 O 1.21284 * 120.00183 * 265.13396 * 4 2 1 6 6 N 1.34780 * 120.00336 * 85.12887 * 4 2 1 7 7 C 1.46500 * 119.99724 * 355.57627 * 6 4 2 8 8 C 1.46501 * 120.00203 * 175.57268 * 6 4 2 9 9 C 1.50704 * 109.46695 * 90.00007 * 8 6 4 10 10 H 1.07992 * 120.00282 * 0.02562 * 9 8 6 11 11 C 1.37878 * 119.99669 * 179.97438 * 9 8 6 12 12 N 1.31520 * 119.99799 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00027 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47129 * 60.00321 * 13 11 9 15 15 H 1.48505 * 109.47289 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47341 * 300.00218 * 13 11 9 17 17 N 1.46904 * 109.46872 * 119.99293 * 2 1 3 18 18 C 1.46950 * 111.02362 * 178.32574 * 17 2 1 19 19 C 1.52888 * 108.62382 * 52.08712 * 18 17 2 20 20 C 1.50737 * 109.88412 * 50.42100 * 19 18 17 21 21 C 1.38689 * 118.44011 * 163.15570 * 20 19 18 22 22 C 1.38183 * 120.36785 * 179.82880 * 21 20 19 23 23 F 1.35096 * 120.12974 * 179.97438 * 22 21 20 24 24 C 1.38703 * 119.74872 * 359.97248 * 22 21 20 25 25 F 1.35097 * 120.09988 * 180.02562 * 24 22 21 26 26 C 1.38166 * 119.79571 * 0.08121 * 24 22 21 27 27 C 1.37847 * 121.65157 * 343.12974 * 20 19 18 28 28 C 1.46624 * 111.00427 * 301.26050 * 17 2 1 29 29 H 1.08994 * 109.47240 * 304.47924 * 1 2 3 30 30 H 1.09007 * 109.46827 * 64.48207 * 1 2 3 31 31 H 1.09001 * 109.47151 * 184.47641 * 1 2 3 32 32 H 1.08999 * 109.47196 * 94.66473 * 7 6 4 33 33 H 1.09000 * 109.47174 * 214.67375 * 7 6 4 34 34 H 1.09004 * 109.46849 * 334.67192 * 7 6 4 35 35 H 1.08997 * 109.46861 * 210.00105 * 8 6 4 36 36 H 1.09000 * 109.46842 * 330.00216 * 8 6 4 37 37 H 0.97006 * 119.99313 * 179.97438 * 12 11 9 38 38 H 1.08998 * 109.51445 * 292.38120 * 18 17 2 39 39 H 1.09002 * 109.63351 * 171.86523 * 18 17 2 40 40 H 1.08996 * 109.38917 * 290.31866 * 19 18 17 41 41 H 1.08997 * 109.39155 * 170.52170 * 19 18 17 42 42 H 1.07999 * 119.82061 * 359.80986 * 21 20 19 43 43 H 1.07989 * 119.80228 * 180.02562 * 26 24 22 44 44 H 1.09002 * 109.27216 * 168.87588 * 28 17 2 45 45 H 1.09002 * 109.26629 * 49.40192 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.3186 -1.8878 -1.1764 6 7 2.1636 -0.0376 -2.3908 7 6 1.7272 1.3579 -2.4817 8 6 2.7428 -0.7017 -3.5611 9 6 1.6467 -1.3602 -4.3586 10 1 0.6213 -1.2906 -4.0271 11 6 1.9530 -2.0506 -5.5121 12 7 3.2017 -2.1349 -5.9161 13 14 0.5943 -2.8662 -6.5011 14 1 -0.3795 -1.8374 -6.9467 15 1 1.1814 -3.5395 -7.6874 16 1 -0.0991 -3.8706 -5.6552 17 7 2.0196 -0.6924 1.1996 18 6 3.4880 -0.7471 1.2142 19 6 4.0314 0.6666 1.0053 20 6 3.3647 1.6191 1.9646 21 6 3.9540 2.8551 2.1847 22 6 3.3749 3.7604 3.0533 23 9 3.9533 4.9629 3.2645 24 6 2.1973 3.4300 3.7075 25 9 1.6247 4.3099 4.5578 26 6 1.6123 2.1977 3.4877 27 6 2.1963 1.2888 2.6172 28 6 1.5250 -0.0450 2.4187 29 1 -0.3633 0.5817 0.8471 30 1 -0.3633 0.4427 -0.9275 31 1 -0.3633 -1.0245 0.0802 32 1 2.5760 2.0168 -2.2987 33 1 1.3266 1.5492 -3.4772 34 1 0.9541 1.5461 -1.7366 35 1 3.2516 0.0354 -4.1823 36 1 3.4577 -1.4566 -3.2338 37 1 3.4172 -2.6209 -6.7275 38 1 3.8362 -1.3958 0.4105 39 1 3.8305 -1.1329 2.1744 40 1 3.8305 0.9839 -0.0180 41 1 5.1072 0.6704 1.1806 42 1 4.8708 3.1114 1.6747 43 1 0.6953 1.9404 3.9967 44 1 1.7349 -0.6845 3.2761 45 1 0.4483 0.1029 2.3359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880448133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:32 Heat of formation + Delta-G solvation = -82.236936 kcal Electronic energy + Delta-G solvation = -30281.201240 eV Core-core repulsion = 25935.063789 eV Total energy + Delta-G solvation = -4346.137451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.72822 -48.81116 -41.07461 -39.04763 -36.92114 -34.79889 -33.38700 -32.74304 -31.92192 -30.18380 -29.21278 -27.71710 -26.05368 -25.30221 -23.90903 -23.57049 -23.03320 -22.10298 -20.00793 -18.20594 -18.08587 -17.58555 -16.88175 -16.65118 -16.52646 -16.50683 -15.96043 -15.47907 -15.22635 -15.18229 -14.72973 -14.67415 -14.24337 -14.11457 -13.99682 -13.85278 -13.40365 -13.17125 -12.92166 -12.63498 -12.54289 -12.26866 -12.16747 -12.04317 -11.86660 -11.68764 -11.50572 -11.37755 -11.18659 -11.16256 -10.92480 -10.76057 -10.57810 -10.16271 -9.64938 -9.30007 -8.89180 -8.78083 -8.44210 -8.33896 -7.66214 -6.05371 -4.09859 0.56287 0.62651 2.94436 3.31172 3.33475 3.36102 3.39849 3.46535 3.57598 3.98106 4.05799 4.18700 4.28230 4.44207 4.51947 4.70033 4.88422 4.90339 5.01086 5.15270 5.22049 5.24488 5.29643 5.30477 5.40121 5.42247 5.50339 5.54828 5.59441 5.63149 5.71182 5.75936 5.84159 5.90908 6.08653 6.10880 6.14046 6.30543 6.42111 6.83330 6.93928 7.08252 7.39572 7.51779 7.90968 8.21924 8.38710 8.89301 9.08821 9.55308 11.02680 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021249 B = 0.002827 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.395273 B = 9902.615087 C =10139.660368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.056 3.944 3 H 0.063 0.937 4 C 0.510 3.490 5 O -0.519 6.519 6 N -0.603 5.603 7 C 0.079 3.921 8 C 0.248 3.752 9 C -0.525 4.525 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.499 5.499 18 C 0.047 3.953 19 C -0.124 4.124 20 C -0.053 4.053 21 C -0.123 4.123 22 C 0.066 3.934 23 F -0.130 7.130 24 C 0.063 3.937 25 F -0.131 7.131 26 C -0.120 4.120 27 C -0.093 4.093 28 C 0.086 3.914 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.264 0.736 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.099 0.901 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.225 11.209 19.068 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.055 4.055 3 H 0.080 0.920 4 C 0.295 3.705 5 O -0.394 6.394 6 N -0.336 5.336 7 C -0.066 4.066 8 C 0.129 3.871 9 C -0.564 4.564 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.220 5.220 18 C -0.081 4.081 19 C -0.163 4.163 20 C -0.053 4.053 21 C -0.142 4.142 22 C 0.046 3.954 23 F -0.109 7.109 24 C 0.043 3.957 25 F -0.109 7.109 26 C -0.139 4.139 27 C -0.095 4.095 28 C -0.043 4.043 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.164 0.836 43 H 0.165 0.835 44 H 0.117 0.883 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.131 10.057 18.925 21.461 hybrid contribution -0.369 1.145 -0.422 1.275 sum -1.500 11.202 18.503 21.682 Atomic orbital electron populations 1.21846 0.92446 1.03715 1.02148 1.21788 0.97181 0.96360 0.90184 0.91980 1.20002 0.79323 0.87392 0.83823 1.90676 1.49179 1.15017 1.84572 1.48174 1.61314 1.11882 1.12263 1.21716 0.98621 0.83230 1.02988 1.19255 0.94156 0.92821 0.80842 1.21384 0.93919 1.33484 1.07618 0.92514 1.24930 0.95645 0.96092 0.97419 1.69922 1.17265 1.42326 1.23982 0.86567 0.81888 0.79708 0.79314 1.20282 1.21201 1.20126 1.62349 1.09478 1.50029 1.00130 1.22358 0.86671 0.94741 1.04302 1.21262 1.00941 0.95725 0.98334 1.19568 0.94242 0.94286 0.97234 1.21061 1.01654 0.92993 0.98503 1.17592 0.93496 0.83295 1.01039 1.91528 1.83578 1.41987 1.93780 1.17596 0.93586 0.89828 0.94705 1.91526 1.83836 1.67593 1.67974 1.20995 1.01455 0.91376 1.00059 1.20475 0.95091 0.98020 0.95902 1.21380 0.99920 0.88862 0.94111 0.92004 0.91242 0.90681 0.93940 0.90742 0.92264 0.95087 0.93989 0.92675 0.87850 0.90083 0.89416 0.89256 0.83643 0.83547 0.88290 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.49 37.16 0.32 -1.48 16 2 C 0.06 0.79 0.91 -68.87 -0.06 0.73 16 3 H 0.06 0.80 4.50 -51.93 -0.23 0.57 16 4 C 0.51 9.92 5.67 -10.99 -0.06 9.86 16 5 O -0.52 -12.43 14.82 5.55 0.08 -12.35 16 6 N -0.60 -12.14 2.86 -182.95 -0.52 -12.66 16 7 C 0.08 1.20 9.92 59.85 0.59 1.79 16 8 C 0.25 6.29 5.15 -5.19 -0.03 6.26 16 9 C -0.53 -14.64 9.39 -34.44 -0.32 -14.96 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 13 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 N -0.50 -6.43 4.61 -229.78 -1.06 -7.48 16 18 C 0.05 0.58 5.48 -3.85 -0.02 0.56 16 19 C -0.12 -1.32 5.15 -27.92 -0.14 -1.47 16 20 C -0.05 -0.52 5.06 -104.58 -0.53 -1.05 16 21 C -0.12 -1.18 9.63 -39.44 -0.38 -1.56 16 22 C 0.07 0.70 7.31 -39.43 -0.29 0.41 16 23 F -0.13 -1.51 17.19 2.25 0.04 -1.48 16 24 C 0.06 0.65 7.31 -39.44 -0.29 0.36 16 25 F -0.13 -1.46 17.19 2.25 0.04 -1.42 16 26 C -0.12 -1.03 9.62 -39.42 -0.38 -1.41 16 27 C -0.09 -0.86 5.30 -104.61 -0.55 -1.42 16 28 C 0.09 0.80 5.34 -5.16 -0.03 0.77 16 29 H 0.06 0.58 6.41 -51.93 -0.33 0.25 16 30 H 0.07 0.87 6.73 -51.92 -0.35 0.52 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 34 H 0.06 0.75 4.94 -51.93 -0.26 0.49 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.04 1.20 7.49 -51.93 -0.39 0.81 16 37 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 38 H 0.10 1.62 6.40 -51.93 -0.33 1.29 16 39 H 0.08 0.85 8.04 -51.93 -0.42 0.44 16 40 H 0.09 1.06 6.61 -51.93 -0.34 0.72 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 43 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.10 0.80 5.82 -51.93 -0.30 0.50 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -32.55 363.89 -8.37 -40.92 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.88 Total: -1.14 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -2.27 Total: -0.97 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: -0.84 Total: -45.70 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.08 Total: -12.35 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.08 Total: -2.90 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.55 -8.37 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880448133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.315 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds