Wall clock time and date at job start Tue Mar 31 2020 21:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47321 * 2 1 4 4 C 1.50695 * 109.47543 * 239.99625 * 2 1 3 5 5 O 1.21284 * 120.00183 * 265.13396 * 4 2 1 6 6 N 1.34780 * 120.00336 * 85.12887 * 4 2 1 7 7 C 1.46500 * 119.99724 * 355.57627 * 6 4 2 8 8 C 1.46501 * 120.00203 * 175.57268 * 6 4 2 9 9 C 1.50704 * 109.46695 * 90.00007 * 8 6 4 10 10 H 1.07992 * 120.00282 * 0.02562 * 9 8 6 11 11 C 1.37878 * 119.99669 * 179.97438 * 9 8 6 12 12 N 1.31520 * 119.99799 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00027 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47129 * 60.00321 * 13 11 9 15 15 H 1.48505 * 109.47289 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47341 * 300.00218 * 13 11 9 17 17 N 1.46904 * 109.46872 * 119.99293 * 2 1 3 18 18 C 1.46950 * 111.02362 * 178.32574 * 17 2 1 19 19 C 1.52888 * 108.62382 * 52.08712 * 18 17 2 20 20 C 1.50737 * 109.88412 * 50.42100 * 19 18 17 21 21 C 1.38689 * 118.44011 * 163.15570 * 20 19 18 22 22 C 1.38183 * 120.36785 * 179.82880 * 21 20 19 23 23 F 1.35096 * 120.12974 * 179.97438 * 22 21 20 24 24 C 1.38703 * 119.74872 * 359.97248 * 22 21 20 25 25 F 1.35097 * 120.09988 * 180.02562 * 24 22 21 26 26 C 1.38166 * 119.79571 * 0.08121 * 24 22 21 27 27 C 1.37847 * 121.65157 * 343.12974 * 20 19 18 28 28 C 1.46624 * 111.00427 * 301.26050 * 17 2 1 29 29 H 1.08994 * 109.47240 * 304.47924 * 1 2 3 30 30 H 1.09007 * 109.46827 * 64.48207 * 1 2 3 31 31 H 1.09001 * 109.47151 * 184.47641 * 1 2 3 32 32 H 1.08999 * 109.47196 * 94.66473 * 7 6 4 33 33 H 1.09000 * 109.47174 * 214.67375 * 7 6 4 34 34 H 1.09004 * 109.46849 * 334.67192 * 7 6 4 35 35 H 1.08997 * 109.46861 * 210.00105 * 8 6 4 36 36 H 1.09000 * 109.46842 * 330.00216 * 8 6 4 37 37 H 0.97006 * 119.99313 * 179.97438 * 12 11 9 38 38 H 1.08998 * 109.51445 * 292.38120 * 18 17 2 39 39 H 1.09002 * 109.63351 * 171.86523 * 18 17 2 40 40 H 1.08996 * 109.38917 * 290.31866 * 19 18 17 41 41 H 1.08997 * 109.39155 * 170.52170 * 19 18 17 42 42 H 1.07999 * 119.82061 * 359.80986 * 21 20 19 43 43 H 1.07989 * 119.80228 * 180.02562 * 26 24 22 44 44 H 1.09002 * 109.27216 * 168.87588 * 28 17 2 45 45 H 1.09002 * 109.26629 * 49.40192 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.3186 -1.8878 -1.1764 6 7 2.1636 -0.0376 -2.3908 7 6 1.7272 1.3579 -2.4817 8 6 2.7428 -0.7017 -3.5611 9 6 1.6467 -1.3602 -4.3586 10 1 0.6213 -1.2906 -4.0271 11 6 1.9530 -2.0506 -5.5121 12 7 3.2017 -2.1349 -5.9161 13 14 0.5943 -2.8662 -6.5011 14 1 -0.3795 -1.8374 -6.9467 15 1 1.1814 -3.5395 -7.6874 16 1 -0.0991 -3.8706 -5.6552 17 7 2.0196 -0.6924 1.1996 18 6 3.4880 -0.7471 1.2142 19 6 4.0314 0.6666 1.0053 20 6 3.3647 1.6191 1.9646 21 6 3.9540 2.8551 2.1847 22 6 3.3749 3.7604 3.0533 23 9 3.9533 4.9629 3.2645 24 6 2.1973 3.4300 3.7075 25 9 1.6247 4.3099 4.5578 26 6 1.6123 2.1977 3.4877 27 6 2.1963 1.2888 2.6172 28 6 1.5250 -0.0450 2.4187 29 1 -0.3633 0.5817 0.8471 30 1 -0.3633 0.4427 -0.9275 31 1 -0.3633 -1.0245 0.0802 32 1 2.5760 2.0168 -2.2987 33 1 1.3266 1.5492 -3.4772 34 1 0.9541 1.5461 -1.7366 35 1 3.2516 0.0354 -4.1823 36 1 3.4577 -1.4566 -3.2338 37 1 3.4172 -2.6209 -6.7275 38 1 3.8362 -1.3958 0.4105 39 1 3.8305 -1.1329 2.1744 40 1 3.8305 0.9839 -0.0180 41 1 5.1072 0.6704 1.1806 42 1 4.8708 3.1114 1.6747 43 1 0.6953 1.9404 3.9967 44 1 1.7349 -0.6845 3.2761 45 1 0.4483 0.1029 2.3359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880448133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:31 Heat of formation + Delta-G solvation = -102.764833 kcal Electronic energy + Delta-G solvation = -30282.091397 eV Core-core repulsion = 25935.063789 eV Total energy + Delta-G solvation = -4347.027608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.53082 -49.62025 -42.04141 -40.34468 -37.96948 -36.49867 -34.79262 -34.16949 -32.98804 -31.08262 -30.20749 -29.41741 -27.44586 -26.37856 -25.27355 -24.65671 -23.83667 -23.35501 -21.12581 -19.53106 -18.87514 -18.65450 -18.46572 -17.88855 -17.74693 -17.37788 -17.10627 -16.70229 -16.54994 -16.07549 -16.04594 -15.53891 -15.45811 -15.31967 -15.06731 -14.87788 -14.40529 -14.22257 -14.05578 -13.96025 -13.67948 -13.51285 -13.47544 -13.28382 -13.12880 -13.01061 -12.75232 -12.63687 -12.54949 -12.39594 -12.23227 -12.17580 -12.07912 -11.78387 -11.65907 -10.62624 -10.40791 -10.00590 -9.56218 -9.41107 -9.30790 -8.20749 -6.35056 -0.20001 -0.07221 1.37476 1.41733 1.48758 1.86008 2.21210 2.24570 2.42786 2.73093 2.93290 3.08849 3.23294 3.40649 3.51182 3.66754 3.77362 3.93672 4.02990 4.10876 4.15622 4.23941 4.35592 4.37664 4.51341 4.64986 4.68931 4.71569 4.74803 4.76766 4.80735 4.82124 4.88528 4.95365 4.97578 5.05303 5.09275 5.23613 5.27768 5.36961 5.57689 5.68254 5.82722 5.92554 6.07959 6.09170 6.72510 6.82914 7.31102 7.55061 8.85838 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021249 B = 0.002827 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.395273 B = 9902.615087 C =10139.660368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.081 0.919 4 C 0.504 3.496 5 O -0.575 6.575 6 N -0.611 5.611 7 C 0.074 3.926 8 C 0.264 3.736 9 C -0.541 4.541 10 H 0.052 0.948 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.965 3.035 14 H -0.260 1.260 15 H -0.279 1.279 16 H -0.278 1.278 17 N -0.518 5.518 18 C 0.049 3.951 19 C -0.117 4.117 20 C -0.057 4.057 21 C -0.119 4.119 22 C 0.051 3.949 23 F -0.140 7.140 24 C 0.053 3.947 25 F -0.138 7.138 26 C -0.105 4.105 27 C -0.089 4.089 28 C 0.088 3.912 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.022 0.978 36 H -0.003 1.003 37 H 0.267 0.733 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.157 0.843 43 H 0.176 0.824 44 H 0.117 0.883 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.278 12.449 20.621 24.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.039 4.039 3 H 0.098 0.902 4 C 0.291 3.709 5 O -0.454 6.454 6 N -0.343 5.343 7 C -0.068 4.068 8 C 0.143 3.857 9 C -0.579 4.579 10 H 0.071 0.929 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.789 3.211 14 H -0.185 1.185 15 H -0.204 1.204 16 H -0.203 1.203 17 N -0.239 5.239 18 C -0.079 4.079 19 C -0.155 4.155 20 C -0.058 4.058 21 C -0.138 4.138 22 C 0.031 3.969 23 F -0.119 7.119 24 C 0.033 3.967 25 F -0.117 7.117 26 C -0.124 4.124 27 C -0.091 4.091 28 C -0.039 4.039 29 H 0.121 0.879 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.040 0.960 36 H 0.016 0.984 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.120 0.880 42 H 0.174 0.826 43 H 0.193 0.807 44 H 0.135 0.865 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.201 11.350 20.498 23.649 hybrid contribution 0.330 0.745 -0.857 1.182 sum -2.871 12.095 19.642 23.245 Atomic orbital electron populations 1.21898 0.90718 1.03488 1.03940 1.21643 0.98192 0.96124 0.87916 0.90190 1.21044 0.77867 0.86973 0.84971 1.90641 1.51398 1.17763 1.85552 1.48163 1.61192 1.13734 1.11200 1.21970 1.00483 0.80588 1.03750 1.18688 0.93014 0.91732 0.82309 1.21678 0.94155 1.33942 1.08167 0.92937 1.25835 0.98064 0.96614 0.98603 1.70043 1.19241 1.43061 1.24524 0.85512 0.79063 0.78818 0.77701 1.18483 1.20438 1.20336 1.62286 1.09645 1.51077 1.00931 1.22231 0.86918 0.95146 1.03617 1.21123 1.01920 0.94751 0.97693 1.19486 0.94719 0.94120 0.97468 1.21118 1.01945 0.92610 0.98139 1.17788 0.94045 0.83240 1.01824 1.91501 1.83836 1.42640 1.93936 1.17799 0.93663 0.90401 0.94802 1.91510 1.83924 1.67979 1.68246 1.21178 1.01921 0.90076 0.99200 1.20482 0.94713 0.98054 0.95841 1.21523 1.00811 0.88848 0.92763 0.87891 0.91353 0.92368 0.91603 0.91475 0.89016 0.96036 0.98441 0.92458 0.92125 0.88195 0.91154 0.87950 0.82560 0.80692 0.86490 0.86354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.49 71.98 0.61 -2.54 16 2 C 0.07 1.93 0.91 44.17 0.04 1.97 16 3 H 0.08 1.84 4.50 -2.39 -0.01 1.83 16 4 C 0.50 20.00 5.67 87.65 0.50 20.50 16 5 O -0.57 -28.98 14.82 -3.04 -0.05 -29.03 16 6 N -0.61 -25.09 2.86 -851.12 -2.43 -27.52 16 7 C 0.07 2.18 9.92 127.77 1.27 3.45 16 8 C 0.26 14.03 5.15 85.63 0.44 14.47 16 9 C -0.54 -31.00 9.39 25.60 0.24 -30.76 16 10 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 11 C 0.01 0.44 5.46 84.65 0.46 0.91 16 12 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 13 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 14 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 N -0.52 -12.48 4.61 -880.89 -4.06 -16.54 16 18 C 0.05 1.19 5.48 86.26 0.47 1.67 16 19 C -0.12 -2.35 5.15 29.82 0.15 -2.20 16 20 C -0.06 -0.99 5.06 -19.84 -0.10 -1.09 16 21 C -0.12 -2.03 9.63 22.36 0.22 -1.82 16 22 C 0.05 0.99 7.31 22.37 0.16 1.15 16 23 F -0.14 -3.10 17.19 44.97 0.77 -2.33 16 24 C 0.05 0.96 7.31 22.36 0.16 1.12 16 25 F -0.14 -2.77 17.19 44.97 0.77 -2.00 16 26 C -0.10 -1.38 9.62 22.37 0.22 -1.17 16 27 C -0.09 -1.33 5.30 -19.86 -0.11 -1.43 16 28 C 0.09 1.30 5.34 85.59 0.46 1.76 16 29 H 0.10 1.43 6.41 -2.39 -0.02 1.41 16 30 H 0.07 1.52 6.73 -2.38 -0.02 1.51 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 2.07 8.11 -2.39 -0.02 2.05 16 34 H 0.09 2.07 4.94 -2.38 -0.01 2.06 16 35 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 36 H 0.00 -0.16 7.49 -2.39 -0.02 -0.17 16 37 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 38 H 0.06 2.02 6.40 -2.39 -0.02 2.01 16 39 H 0.10 2.00 8.04 -2.39 -0.02 1.98 16 40 H 0.07 1.67 6.61 -2.39 -0.02 1.65 16 41 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 43 H 0.18 1.30 8.06 -2.92 -0.02 1.27 16 44 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.12 1.31 5.82 -2.39 -0.01 1.30 16 Total: -1.00 -74.80 363.89 3.55 -71.25 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.03 Total: 9.10 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 5.19 Total: 5.99 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -6.20 Total: -99.79 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.05 Total: -29.03 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 1.55 Total: -4.33 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -74.80 3.55 -71.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880448133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.514 kcal (2) G-P(sol) polarization free energy of solvation -74.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds