Wall clock time and date at job start Tue Mar 31 2020 21:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 O 1.21281 * 119.99736 * 119.99813 * 4 2 1 6 6 N 1.34770 * 120.00019 * 300.00531 * 4 2 1 7 7 C 1.46497 * 120.00258 * 359.97438 * 6 4 2 8 8 C 1.46512 * 119.99646 * 179.97438 * 6 4 2 9 9 C 1.50700 * 109.46916 * 90.00165 * 8 6 4 10 10 H 1.08006 * 119.99907 * 359.97438 * 9 8 6 11 11 C 1.37875 * 119.99609 * 180.02562 * 9 8 6 12 12 N 1.31512 * 120.00326 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99684 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47193 * 89.99748 * 13 11 9 15 15 H 1.48503 * 109.46868 * 209.99811 * 13 11 9 16 16 H 1.48506 * 109.47029 * 329.99277 * 13 11 9 17 17 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 18 18 C 1.47164 * 111.00050 * 69.03343 * 17 2 1 19 19 C 1.52887 * 108.50375 * 165.31435 * 18 17 2 20 20 C 1.50735 * 109.95971 * 50.41939 * 19 18 17 21 21 C 1.38692 * 118.43324 * 163.29902 * 20 19 18 22 22 C 1.38178 * 120.36515 * 179.58295 * 21 20 19 23 23 F 1.35098 * 120.12893 * 180.02562 * 22 21 20 24 24 C 1.38699 * 119.75206 * 0.02562 * 22 21 20 25 25 F 1.35096 * 120.10510 * 180.10116 * 24 22 21 26 26 C 1.38165 * 119.79285 * 0.08251 * 24 22 21 27 27 C 1.37844 * 121.65319 * 343.03019 * 20 19 18 28 28 C 1.46628 * 111.00149 * 306.04578 * 17 2 1 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 1.09000 * 109.47590 * 90.00001 * 7 6 4 33 33 H 1.09004 * 109.46902 * 209.99966 * 7 6 4 34 34 H 1.08995 * 109.46944 * 329.99439 * 7 6 4 35 35 H 1.09004 * 109.46657 * 209.99747 * 8 6 4 36 36 H 1.08998 * 109.46905 * 329.99909 * 8 6 4 37 37 H 0.97001 * 120.00292 * 180.02562 * 12 11 9 38 38 H 1.08993 * 109.63423 * 285.02263 * 18 17 2 39 39 H 1.09010 * 109.62781 * 45.61299 * 18 17 2 40 40 H 1.09004 * 109.39275 * 290.26728 * 19 18 17 41 41 H 1.08997 * 109.30656 * 170.51902 * 19 18 17 42 42 H 1.08001 * 119.81809 * 359.57824 * 21 20 19 43 43 H 1.07996 * 119.80520 * 179.97438 * 26 24 22 44 44 H 1.08996 * 109.26808 * 296.22343 * 28 17 2 45 45 H 1.08999 * 109.26940 * 55.73044 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 0.8649 0.9413 2.5890 8 6 2.1947 -0.9411 3.6507 9 6 3.5224 -0.3580 4.0611 10 1 3.9592 0.4465 3.4880 11 6 4.1798 -0.8523 5.1676 12 7 3.6481 -1.8323 5.8652 13 14 5.8259 -0.1301 5.6760 14 1 5.6027 0.9948 6.6195 15 1 6.6425 -1.1781 6.3395 16 1 6.5410 0.3670 4.4732 17 7 2.0197 -0.6924 -1.1995 18 6 1.7320 0.0881 -2.4134 19 6 2.5668 -0.4771 -3.5629 20 6 2.3884 -1.9717 -3.6418 21 6 2.7683 -2.6215 -4.8068 22 6 2.6304 -3.9917 -4.9191 23 9 3.0024 -4.6198 -6.0559 24 6 2.1085 -4.7201 -3.8603 25 9 1.9725 -6.0603 -3.9617 26 6 1.7286 -4.0706 -2.7015 27 6 1.8673 -2.6946 -2.5902 28 6 1.4355 -2.0329 -1.3077 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.1832 0.6438 2.6221 33 1 1.1227 1.4665 3.5087 34 1 1.0288 1.6002 1.7363 35 1 1.4766 -0.8155 4.4611 36 1 2.3155 -2.0023 3.4333 37 1 4.1105 -2.1798 6.6439 38 1 0.6726 0.0094 -2.6570 39 1 1.9961 1.1328 -2.2482 40 1 3.6187 -0.2465 -3.3937 41 1 2.2432 -0.0240 -4.4999 42 1 3.1741 -2.0533 -5.6307 43 1 1.3219 -4.6375 -1.8772 44 1 1.7639 -2.6377 -0.4626 45 1 0.3485 -1.9538 -1.2926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880448134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:35 Heat of formation + Delta-G solvation = -100.338255 kcal Electronic energy + Delta-G solvation = -29667.517110 eV Core-core repulsion = 25320.594726 eV Total energy + Delta-G solvation = -4346.922383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.55011 -49.63965 -41.63719 -40.43657 -38.07626 -36.54170 -34.88727 -34.18491 -33.09730 -30.87424 -30.05502 -29.15149 -27.58888 -26.41449 -25.51124 -24.55482 -23.84269 -23.19270 -20.77243 -19.88051 -18.95042 -18.66545 -18.30950 -17.90367 -17.53523 -17.39158 -17.14732 -16.57824 -16.36480 -16.07468 -16.03238 -15.68811 -15.45235 -15.37634 -14.91423 -14.80912 -14.49825 -14.42564 -14.22391 -14.07360 -13.68245 -13.46344 -13.35981 -13.23191 -13.11511 -12.82345 -12.71271 -12.56169 -12.48792 -12.28165 -12.14902 -12.07484 -11.97210 -11.73782 -11.65345 -10.62883 -10.34922 -10.05433 -9.54677 -9.38248 -9.12003 -8.20915 -6.35516 -0.16354 -0.06913 1.36695 1.40119 1.50164 1.92665 2.23110 2.27887 2.42308 2.70876 2.93103 3.08601 3.26027 3.44737 3.54590 3.71798 3.86445 3.95173 4.09095 4.15668 4.27545 4.36202 4.41128 4.45126 4.50214 4.65100 4.67800 4.72729 4.76817 4.79798 4.83984 4.93531 4.98371 4.98899 5.04608 5.07027 5.19832 5.25755 5.28769 5.38410 5.59096 5.70561 5.87087 5.99940 6.08690 6.14096 6.73363 6.87637 7.31371 7.58979 8.85661 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.002832 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.612412 B = 9885.963804 C =10686.346409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.078 3.922 3 H 0.130 0.870 4 C 0.498 3.502 5 O -0.581 6.581 6 N -0.610 5.610 7 C 0.076 3.924 8 C 0.262 3.738 9 C -0.539 4.539 10 H 0.053 0.947 11 C 0.006 3.994 12 N -0.930 5.930 13 Si 0.966 3.034 14 H -0.262 1.262 15 H -0.283 1.283 16 H -0.273 1.273 17 N -0.531 5.531 18 C 0.047 3.953 19 C -0.073 4.073 20 C -0.049 4.049 21 C -0.115 4.115 22 C 0.051 3.949 23 F -0.137 7.137 24 C 0.045 3.955 25 F -0.142 7.142 26 C -0.129 4.129 27 C -0.057 4.057 28 C 0.087 3.913 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.022 0.978 36 H -0.005 1.005 37 H 0.266 0.734 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.177 0.823 43 H 0.145 0.855 44 H 0.075 0.925 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.486 7.968 -22.005 25.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.033 4.033 3 H 0.148 0.852 4 C 0.286 3.714 5 O -0.460 6.460 6 N -0.342 5.342 7 C -0.066 4.066 8 C 0.140 3.860 9 C -0.578 4.578 10 H 0.071 0.929 11 C -0.192 4.192 12 N -0.570 5.570 13 Si 0.790 3.210 14 H -0.187 1.187 15 H -0.209 1.209 16 H -0.198 1.198 17 N -0.255 5.255 18 C -0.080 4.080 19 C -0.110 4.110 20 C -0.050 4.050 21 C -0.133 4.133 22 C 0.031 3.969 23 F -0.116 7.116 24 C 0.025 3.975 25 F -0.120 7.120 26 C -0.148 4.148 27 C -0.058 4.058 28 C -0.040 4.040 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.040 0.960 36 H 0.013 0.987 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.139 0.861 42 H 0.195 0.805 43 H 0.163 0.837 44 H 0.093 0.907 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.583 7.236 -21.894 24.605 hybrid contribution 0.254 -1.065 0.749 1.326 sum -8.329 6.171 -21.145 23.550 Atomic orbital electron populations 1.22657 0.93042 1.03221 1.05890 1.21632 0.95834 0.98651 0.87196 0.85242 1.21260 0.80081 0.84770 0.85308 1.90616 1.39578 1.29102 1.86731 1.48129 1.50460 1.29594 1.06033 1.22107 0.94148 0.86570 1.03789 1.18692 0.93566 0.91622 0.82099 1.21719 1.05918 1.18963 1.11209 0.92863 1.25851 1.01749 0.95263 0.96374 1.70049 1.40748 1.27294 1.18876 0.85439 0.78862 0.78303 0.78352 1.18699 1.20890 1.19775 1.62054 1.59059 1.02053 1.02333 1.22399 0.99072 0.98473 0.88017 1.20708 1.02211 0.87986 1.00064 1.19823 0.95875 0.98139 0.91161 1.21274 1.01122 0.90685 1.00227 1.17769 1.04280 0.92083 0.82745 1.91496 1.89496 1.82727 1.47880 1.17708 1.06158 0.77515 0.96078 1.91483 1.94122 1.29875 1.96561 1.21045 1.02006 0.95110 0.96668 1.19624 0.98281 0.92200 0.95674 1.21052 0.97649 0.90896 0.94422 0.93012 0.88957 0.88411 0.90765 0.91865 0.88480 0.96007 0.98685 0.92504 0.92204 0.87519 0.89170 0.86097 0.80532 0.83704 0.90728 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.28 8.08 71.98 0.58 -2.70 16 2 C 0.08 1.93 1.93 44.17 0.09 2.02 16 3 H 0.13 2.60 7.17 -2.39 -0.02 2.58 16 4 C 0.50 19.56 6.82 87.66 0.60 20.16 16 5 O -0.58 -29.34 13.88 -3.03 -0.04 -29.38 16 6 N -0.61 -24.59 2.86 -851.12 -2.43 -27.02 16 7 C 0.08 2.03 8.80 127.77 1.12 3.15 16 8 C 0.26 13.95 5.16 85.63 0.44 14.39 16 9 C -0.54 -30.96 9.39 25.60 0.24 -30.72 16 10 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 11 C 0.01 0.37 5.46 84.65 0.46 0.83 16 12 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 13 Si 0.97 45.04 29.54 68.60 2.03 47.06 16 14 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 16 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 17 N -0.53 -13.06 4.38 -880.30 -3.86 -16.92 16 18 C 0.05 0.67 4.98 86.22 0.43 1.10 16 19 C -0.07 -0.96 5.94 29.82 0.18 -0.78 16 20 C -0.05 -0.95 5.77 -19.84 -0.11 -1.06 16 21 C -0.11 -2.05 9.63 22.36 0.22 -1.83 16 22 C 0.05 1.19 7.31 22.37 0.16 1.36 16 23 F -0.14 -3.36 17.19 44.97 0.77 -2.58 16 24 C 0.05 1.19 7.30 22.36 0.16 1.35 16 25 F -0.14 -4.03 17.19 44.97 0.77 -3.26 16 26 C -0.13 -3.30 9.62 22.37 0.22 -3.08 16 27 C -0.06 -1.39 5.79 -19.86 -0.12 -1.50 16 28 C 0.09 2.32 4.42 85.59 0.38 2.69 16 29 H 0.05 1.05 6.23 -2.39 -0.01 1.04 16 30 H 0.09 1.43 4.53 -2.39 -0.01 1.42 16 31 H 0.10 1.06 7.01 -2.39 -0.02 1.05 16 32 H 0.07 1.59 6.95 -2.39 -0.02 1.58 16 33 H 0.06 1.84 8.07 -2.38 -0.02 1.82 16 34 H 0.10 1.83 6.01 -2.39 -0.01 1.82 16 35 H 0.02 1.18 8.07 -2.38 -0.02 1.16 16 36 H 0.00 -0.31 7.42 -2.39 -0.02 -0.33 16 37 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.06 0.68 7.23 -2.39 -0.02 0.66 16 39 H 0.11 1.09 7.87 -2.38 -0.02 1.07 16 40 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 43 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 44 H 0.07 2.68 5.92 -2.39 -0.01 2.67 16 45 H 0.07 1.57 5.94 -2.39 -0.01 1.56 16 Total: -1.00 -78.45 363.00 3.61 -74.84 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.03 Total: 8.08 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 5.05 Total: 5.38 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -6.00 Total: -100.14 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.04 Total: -29.38 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 1.55 Total: -5.84 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -78.45 3.61 -74.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880448134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.496 kcal (2) G-P(sol) polarization free energy of solvation -78.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds