Wall clock time and date at job start Tue Mar 31 2020 20:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47163 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00071 * 2 1 3 5 5 N 1.46893 * 109.47497 * 297.95419 * 4 2 1 6 6 C 1.46895 * 111.00586 * 182.99535 * 5 4 2 7 7 C 1.53234 * 109.34559 * 187.25269 * 6 5 4 8 8 N 1.47082 * 108.51838 * 306.16857 * 7 6 5 9 9 C 1.34781 * 120.88036 * 231.18289 * 8 7 6 10 10 O 1.21686 * 119.99742 * 6.03242 * 9 8 7 11 11 C 1.46368 * 119.99890 * 186.03445 * 9 8 7 12 12 H 1.07994 * 120.00346 * 6.45339 * 11 9 8 13 13 C 1.40051 * 119.99971 * 186.45642 * 11 9 8 14 14 N 1.30679 * 119.99827 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00142 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46993 * 269.99927 * 15 13 11 17 17 H 1.48496 * 109.47049 * 29.99830 * 15 13 11 18 18 H 1.48500 * 109.47305 * 149.99993 * 15 13 11 19 19 C 1.47080 * 118.23727 * 51.45842 * 8 7 6 20 20 C 1.46903 * 110.99697 * 307.29601 * 5 4 2 21 21 C 1.50696 * 109.46746 * 239.99693 * 2 1 3 22 22 C 1.38210 * 119.98000 * 299.72979 * 21 2 1 23 23 C 1.38471 * 120.02893 * 179.72741 * 22 21 2 24 24 F 1.35091 * 120.01551 * 180.29606 * 23 22 21 25 25 C 1.38423 * 119.97141 * 0.54566 * 23 22 21 26 26 C 1.38420 * 119.95329 * 359.72539 * 25 23 22 27 27 F 1.35093 * 120.01876 * 180.02562 * 26 25 23 28 28 C 1.38214 * 119.97375 * 120.00062 * 21 2 1 29 29 H 1.09000 * 109.47153 * 59.99657 * 1 2 3 30 30 H 1.08996 * 109.47606 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47033 * 300.00194 * 1 2 3 32 32 H 1.09007 * 109.46676 * 177.95450 * 4 2 1 33 33 H 1.09003 * 109.47108 * 57.96053 * 4 2 1 34 34 H 1.09003 * 109.49309 * 67.28996 * 6 5 4 35 35 H 1.09008 * 109.48885 * 307.21283 * 6 5 4 36 36 H 1.09002 * 109.63194 * 186.45803 * 7 6 5 37 37 H 1.09006 * 109.78924 * 65.96715 * 7 6 5 38 38 H 0.96993 * 119.99639 * 180.02562 * 14 13 11 39 39 H 1.08994 * 109.63184 * 68.24924 * 19 8 7 40 40 H 1.09004 * 109.62557 * 188.83109 * 19 8 7 41 41 H 1.09003 * 109.49268 * 292.69902 * 20 5 4 42 42 H 1.08992 * 109.49683 * 52.75721 * 20 5 4 43 43 H 1.07999 * 119.98376 * 359.97438 * 22 21 2 44 44 H 1.08004 * 120.02518 * 179.75069 * 25 23 22 45 45 H 1.07999 * 119.98482 * 0.02823 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.5911 -0.0009 2.4482 6 6 2.1220 -0.6253 3.6672 7 6 1.4895 0.0392 4.8946 8 7 1.6979 1.4920 4.7987 9 6 2.2248 2.1847 5.8278 10 8 2.6363 1.5961 6.8101 11 6 2.3020 3.6450 5.7638 12 1 1.8440 4.1744 4.9415 13 6 2.9698 4.3556 6.7690 14 7 3.5235 3.7150 7.7644 15 14 3.0676 6.2193 6.6878 16 1 4.2870 6.6188 5.9402 17 1 1.8661 6.7483 5.9939 18 1 3.1278 6.7723 8.0647 19 6 1.3103 2.1697 3.5522 20 6 1.9553 1.4204 2.3755 21 6 2.0322 -0.7105 -1.2304 22 6 1.7026 -2.0353 -1.4458 23 6 2.1589 -2.6875 -2.5789 24 9 1.8316 -3.9807 -2.7922 25 6 2.9548 -2.0153 -3.4904 26 6 3.2889 -0.6901 -3.2709 27 9 4.0651 -0.0327 -4.1599 28 6 2.8268 -0.0383 -2.1399 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.1294 -0.7531 1.2311 33 1 1.6470 -1.7379 1.2677 34 1 3.2038 -0.4961 3.7006 35 1 1.8822 -1.6887 3.6652 36 1 1.9627 -0.3396 5.8007 37 1 0.4214 -0.1765 4.9218 38 1 3.9857 4.2072 8.4607 39 1 0.2253 2.1547 3.4493 40 1 1.6650 3.2003 3.5703 41 1 3.0395 1.5211 2.4269 42 1 1.5951 1.8407 1.4366 43 1 1.0857 -2.5609 -0.7321 44 1 3.3144 -2.5244 -4.3725 45 1 3.0877 0.9955 -1.9682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895065358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:59 Heat of formation + Delta-G solvation = -92.462955 kcal Electronic energy + Delta-G solvation = -29003.061817 eV Core-core repulsion = 24656.480932 eV Total energy + Delta-G solvation = -4346.580885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.36454 -49.34412 -39.99256 -38.77122 -36.89965 -34.88912 -32.84077 -32.45054 -30.75448 -30.73676 -29.70937 -27.70721 -26.20696 -24.86554 -23.55133 -23.15109 -22.97020 -21.05944 -20.10467 -18.81825 -18.07573 -17.46865 -16.80377 -16.68932 -16.33457 -16.14225 -15.78899 -15.65281 -15.25949 -14.82047 -14.80690 -14.64442 -14.37455 -14.28454 -13.92317 -13.71566 -13.31367 -13.07013 -12.87905 -12.54851 -12.34870 -12.25401 -12.19704 -11.77391 -11.58448 -11.35015 -11.32792 -11.13093 -11.09797 -10.91761 -10.81819 -10.70968 -10.35705 -10.22469 -9.99510 -9.28429 -9.13640 -8.88933 -8.21472 -7.61472 -7.20814 -6.22759 -4.67620 0.58402 0.58627 2.95233 3.11065 3.18453 3.21508 3.43118 3.85748 3.97723 4.06603 4.24616 4.39616 4.53109 4.55329 4.57880 4.67690 4.77341 4.92369 5.08240 5.29446 5.39803 5.41402 5.46307 5.51796 5.53515 5.59805 5.63650 5.68181 5.74652 5.77758 5.83647 5.85492 5.86660 6.06231 6.10014 6.18869 6.29105 6.38924 6.44721 6.51829 6.68596 7.18128 7.24063 7.41715 7.59612 8.10132 8.34379 8.99136 9.41785 10.54708 10.73300 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018134 B = 0.002348 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.701483 B =11920.268110 C =12826.146543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.058 4.058 3 H 0.091 0.909 4 C 0.063 3.937 5 N -0.532 5.532 6 C 0.046 3.954 7 C 0.126 3.874 8 N -0.645 5.645 9 C 0.560 3.440 10 O -0.579 6.579 11 C -0.544 4.544 12 H 0.072 0.928 13 C 0.087 3.913 14 N -0.769 5.769 15 Si 0.906 3.094 16 H -0.272 1.272 17 H -0.264 1.264 18 H -0.279 1.279 19 C 0.130 3.870 20 C 0.033 3.967 21 C -0.012 4.012 22 C -0.158 4.158 23 C 0.132 3.868 24 F -0.132 7.132 25 C -0.201 4.201 26 C 0.132 3.868 27 F -0.132 7.132 28 C -0.161 4.161 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.268 0.732 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.036 0.964 42 H 0.079 0.921 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.713 -8.886 -21.939 23.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.076 4.076 3 H 0.109 0.891 4 C -0.065 4.065 5 N -0.256 5.256 6 C -0.082 4.082 7 C 0.001 3.999 8 N -0.384 5.384 9 C 0.366 3.634 10 O -0.462 6.462 11 C -0.581 4.581 12 H 0.090 0.910 13 C -0.132 4.132 14 N -0.397 5.397 15 Si 0.731 3.269 16 H -0.198 1.198 17 H -0.188 1.188 18 H -0.204 1.204 19 C 0.005 3.995 20 C -0.095 4.095 21 C -0.012 4.012 22 C -0.177 4.177 23 C 0.113 3.887 24 F -0.110 7.110 25 C -0.220 4.220 26 C 0.113 3.887 27 F -0.110 7.110 28 C -0.180 4.180 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.112 0.888 41 H 0.054 0.946 42 H 0.097 0.903 43 H 0.162 0.838 44 H 0.164 0.836 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.860 -9.253 -21.196 23.448 hybrid contribution 1.138 0.738 -0.553 1.465 sum -2.722 -8.515 -21.749 23.515 Atomic orbital electron populations 1.21759 0.92548 1.02410 1.02582 1.20390 0.97663 0.99460 0.90097 0.89127 1.22143 0.97595 0.97789 0.89014 1.62015 1.59642 1.02657 1.01323 1.22495 0.97420 0.98038 0.90287 1.21189 0.98769 0.83396 0.96520 1.48248 1.68476 1.05673 1.15971 1.18261 0.76485 0.88157 0.80533 1.90587 1.51889 1.71061 1.32639 1.20953 1.37624 0.89885 1.09608 0.90976 1.25737 0.93467 0.99837 0.94201 1.70012 1.25225 1.36537 1.07949 0.86397 0.79274 0.83132 0.78129 1.19767 1.18813 1.20433 1.21557 0.97835 0.97001 0.83145 1.22790 0.98685 0.88293 0.99749 1.19595 0.93671 0.92644 0.95328 1.21105 1.03600 0.95359 0.97630 1.17258 0.97368 0.79015 0.95087 1.91536 1.90778 1.33960 1.94751 1.21001 1.03857 0.94528 1.02643 1.17254 0.92924 0.89990 0.88529 1.91539 1.72157 1.80603 1.66710 1.21181 1.00914 1.01883 0.94001 0.93060 0.92572 0.90202 0.94904 0.90584 0.94719 0.90903 0.89654 0.93296 0.92076 0.93253 0.88838 0.94615 0.90327 0.83791 0.83604 0.83885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.84 37.16 0.33 -0.82 16 2 C -0.06 -0.50 2.09 -91.77 -0.19 -0.70 16 3 H 0.09 0.79 5.77 -51.93 -0.30 0.49 16 4 C 0.06 0.66 4.30 -3.83 -0.02 0.64 16 5 N -0.53 -7.09 4.05 -234.02 -0.95 -8.04 16 6 C 0.05 0.71 5.62 -3.71 -0.02 0.69 16 7 C 0.13 2.41 6.61 -3.60 -0.02 2.39 16 8 N -0.64 -14.37 3.00 -173.84 -0.52 -14.90 16 9 C 0.56 15.71 7.62 -12.99 -0.10 15.61 16 10 O -0.58 -18.58 14.51 5.20 0.08 -18.51 16 11 C -0.54 -14.94 8.74 -35.63 -0.31 -15.25 16 12 H 0.07 1.79 5.94 -52.49 -0.31 1.48 16 13 C 0.09 2.39 5.50 -17.36 -0.10 2.30 16 14 N -0.77 -22.78 11.85 55.55 0.66 -22.13 16 15 Si 0.91 19.70 29.56 -169.99 -5.02 14.67 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.26 -5.53 7.11 56.52 0.40 -5.12 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 C 0.13 2.31 6.47 -3.36 -0.02 2.29 16 20 C 0.03 0.48 5.26 -3.46 -0.02 0.46 16 21 C -0.01 -0.10 4.78 -104.64 -0.50 -0.60 16 22 C -0.16 -1.31 8.71 -39.51 -0.34 -1.65 16 23 C 0.13 1.16 7.30 -39.43 -0.29 0.87 16 24 F -0.13 -1.24 17.27 2.25 0.04 -1.20 16 25 C -0.20 -1.68 10.01 -39.45 -0.39 -2.07 16 26 C 0.13 1.18 7.30 -39.43 -0.29 0.89 16 27 F -0.13 -1.27 17.27 2.25 0.04 -1.23 16 28 C -0.16 -1.36 9.65 -39.50 -0.38 -1.74 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.45 7.40 -51.93 -0.38 0.06 16 31 H 0.08 0.78 7.66 -51.93 -0.40 0.38 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.73 7.44 -51.93 -0.39 0.35 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.95 8.11 -51.92 -0.42 0.53 16 36 H 0.09 1.84 7.04 -51.93 -0.37 1.47 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.27 7.22 8.29 -40.82 -0.34 6.89 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.74 5.57 -51.93 -0.29 1.45 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.91 5.71 -51.93 -0.30 0.61 16 43 H 0.14 1.04 7.12 -52.49 -0.37 0.67 16 44 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.14 1.04 7.94 -52.49 -0.42 0.62 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -33.03 368.53 -8.83 -41.86 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.04 Total: 0.60 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -2.67 Total: 3.31 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.81 Total: -45.06 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.08 Total: -18.51 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.08 Total: -2.43 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.03 -8.83 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895065358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.604 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds