Wall clock time and date at job start Tue Mar 31 2020 20:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47163 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00071 * 2 1 3 5 5 N 1.46893 * 109.47497 * 297.95419 * 4 2 1 6 6 C 1.46895 * 111.00586 * 182.99535 * 5 4 2 7 7 C 1.53234 * 109.34559 * 187.25269 * 6 5 4 8 8 N 1.47082 * 108.51838 * 306.16857 * 7 6 5 9 9 C 1.34781 * 120.88036 * 231.18289 * 8 7 6 10 10 O 1.21686 * 119.99742 * 6.03242 * 9 8 7 11 11 C 1.46368 * 119.99890 * 186.03445 * 9 8 7 12 12 H 1.07994 * 120.00346 * 6.45339 * 11 9 8 13 13 C 1.40051 * 119.99971 * 186.45642 * 11 9 8 14 14 N 1.30679 * 119.99827 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00142 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46993 * 269.99927 * 15 13 11 17 17 H 1.48496 * 109.47049 * 29.99830 * 15 13 11 18 18 H 1.48500 * 109.47305 * 149.99993 * 15 13 11 19 19 C 1.47080 * 118.23727 * 51.45842 * 8 7 6 20 20 C 1.46903 * 110.99697 * 307.29601 * 5 4 2 21 21 C 1.50696 * 109.46746 * 239.99693 * 2 1 3 22 22 C 1.38210 * 119.98000 * 299.72979 * 21 2 1 23 23 C 1.38471 * 120.02893 * 179.72741 * 22 21 2 24 24 F 1.35091 * 120.01551 * 180.29606 * 23 22 21 25 25 C 1.38423 * 119.97141 * 0.54566 * 23 22 21 26 26 C 1.38420 * 119.95329 * 359.72539 * 25 23 22 27 27 F 1.35093 * 120.01876 * 180.02562 * 26 25 23 28 28 C 1.38214 * 119.97375 * 120.00062 * 21 2 1 29 29 H 1.09000 * 109.47153 * 59.99657 * 1 2 3 30 30 H 1.08996 * 109.47606 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47033 * 300.00194 * 1 2 3 32 32 H 1.09007 * 109.46676 * 177.95450 * 4 2 1 33 33 H 1.09003 * 109.47108 * 57.96053 * 4 2 1 34 34 H 1.09003 * 109.49309 * 67.28996 * 6 5 4 35 35 H 1.09008 * 109.48885 * 307.21283 * 6 5 4 36 36 H 1.09002 * 109.63194 * 186.45803 * 7 6 5 37 37 H 1.09006 * 109.78924 * 65.96715 * 7 6 5 38 38 H 0.96993 * 119.99639 * 180.02562 * 14 13 11 39 39 H 1.08994 * 109.63184 * 68.24924 * 19 8 7 40 40 H 1.09004 * 109.62557 * 188.83109 * 19 8 7 41 41 H 1.09003 * 109.49268 * 292.69902 * 20 5 4 42 42 H 1.08992 * 109.49683 * 52.75721 * 20 5 4 43 43 H 1.07999 * 119.98376 * 359.97438 * 22 21 2 44 44 H 1.08004 * 120.02518 * 179.75069 * 25 23 22 45 45 H 1.07999 * 119.98482 * 0.02823 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.5911 -0.0009 2.4482 6 6 2.1220 -0.6253 3.6672 7 6 1.4895 0.0392 4.8946 8 7 1.6979 1.4920 4.7987 9 6 2.2248 2.1847 5.8278 10 8 2.6363 1.5961 6.8101 11 6 2.3020 3.6450 5.7638 12 1 1.8440 4.1744 4.9415 13 6 2.9698 4.3556 6.7690 14 7 3.5235 3.7150 7.7644 15 14 3.0676 6.2193 6.6878 16 1 4.2870 6.6188 5.9402 17 1 1.8661 6.7483 5.9939 18 1 3.1278 6.7723 8.0647 19 6 1.3103 2.1697 3.5522 20 6 1.9553 1.4204 2.3755 21 6 2.0322 -0.7105 -1.2304 22 6 1.7026 -2.0353 -1.4458 23 6 2.1589 -2.6875 -2.5789 24 9 1.8316 -3.9807 -2.7922 25 6 2.9548 -2.0153 -3.4904 26 6 3.2889 -0.6901 -3.2709 27 9 4.0651 -0.0327 -4.1599 28 6 2.8268 -0.0383 -2.1399 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.1294 -0.7531 1.2311 33 1 1.6470 -1.7379 1.2677 34 1 3.2038 -0.4961 3.7006 35 1 1.8822 -1.6887 3.6652 36 1 1.9627 -0.3396 5.8007 37 1 0.4214 -0.1765 4.9218 38 1 3.9857 4.2072 8.4607 39 1 0.2253 2.1547 3.4493 40 1 1.6650 3.2003 3.5703 41 1 3.0395 1.5211 2.4269 42 1 1.5951 1.8407 1.4366 43 1 1.0857 -2.5609 -0.7321 44 1 3.3144 -2.5244 -4.3725 45 1 3.0877 0.9955 -1.9682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895065358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:58 Heat of formation + Delta-G solvation = -112.604493 kcal Electronic energy + Delta-G solvation = -29003.935219 eV Core-core repulsion = 24656.480932 eV Total energy + Delta-G solvation = -4347.454287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.05038 -50.02617 -40.86840 -40.06441 -38.48611 -36.15879 -34.66689 -34.06887 -32.08385 -31.39752 -30.51123 -29.18203 -27.87288 -25.89101 -24.64604 -24.28284 -23.74534 -22.51932 -21.08445 -20.44118 -18.78153 -18.45958 -18.14025 -17.77604 -17.40548 -17.01793 -16.84002 -16.51124 -16.34348 -16.02869 -16.00416 -15.90085 -15.72973 -15.41563 -15.33561 -14.80577 -14.41298 -14.33910 -13.82943 -13.76130 -13.38075 -13.30217 -13.11140 -12.97223 -12.87907 -12.80934 -12.69683 -12.62271 -12.19288 -12.15416 -12.10139 -11.97331 -11.89834 -11.74155 -11.32511 -10.92722 -9.94138 -9.78807 -9.78211 -9.42441 -8.97135 -8.28396 -6.82907 -0.06159 -0.05846 1.40655 1.42143 1.57440 2.24280 2.30118 2.46468 2.69747 2.82828 3.01701 3.31718 3.51194 3.61244 3.75818 3.91985 3.94673 4.06412 4.12237 4.15239 4.16844 4.37517 4.40994 4.44331 4.51654 4.65248 4.74866 4.76501 4.80566 4.83546 4.89022 4.96917 4.97740 4.99432 5.00683 5.09738 5.20877 5.24042 5.38007 5.42039 5.59447 5.74382 5.76313 6.03475 6.10996 6.15914 6.44638 6.88726 7.44932 8.47877 8.68265 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018134 B = 0.002348 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.701483 B =11920.268110 C =12826.146543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.049 4.049 3 H 0.094 0.906 4 C 0.064 3.936 5 N -0.526 5.526 6 C 0.059 3.941 7 C 0.123 3.877 8 N -0.649 5.649 9 C 0.540 3.460 10 O -0.636 6.636 11 C -0.567 4.567 12 H 0.095 0.905 13 C 0.027 3.973 14 N -0.825 5.825 15 Si 0.995 3.005 16 H -0.261 1.261 17 H -0.246 1.246 18 H -0.276 1.276 19 C 0.124 3.876 20 C 0.044 3.956 21 C -0.014 4.014 22 C -0.154 4.154 23 C 0.122 3.878 24 F -0.137 7.137 25 C -0.199 4.199 26 C 0.120 3.880 27 F -0.138 7.138 28 C -0.160 4.160 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.091 0.909 34 H 0.013 0.987 35 H 0.104 0.896 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.273 0.727 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.017 0.983 42 H 0.116 0.884 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 -8.058 -24.549 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.067 4.067 3 H 0.112 0.888 4 C -0.063 4.063 5 N -0.250 5.250 6 C -0.070 4.070 7 C -0.001 4.001 8 N -0.386 5.386 9 C 0.346 3.654 10 O -0.523 6.523 11 C -0.603 4.603 12 H 0.113 0.887 13 C -0.187 4.187 14 N -0.455 5.455 15 Si 0.815 3.185 16 H -0.185 1.185 17 H -0.169 1.169 18 H -0.201 1.201 19 C 0.001 3.999 20 C -0.085 4.085 21 C -0.014 4.014 22 C -0.172 4.172 23 C 0.102 3.898 24 F -0.116 7.116 25 C -0.218 4.218 26 C 0.101 3.899 27 F -0.117 7.117 28 C -0.178 4.178 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.031 0.969 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.035 0.965 42 H 0.134 0.866 43 H 0.174 0.826 44 H 0.175 0.825 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.948 -8.451 -23.884 25.814 hybrid contribution 1.419 0.374 0.195 1.481 sum -3.529 -8.077 -23.689 25.276 Atomic orbital electron populations 1.21731 0.91965 1.02832 1.02468 1.20287 0.97980 0.99298 0.89159 0.88838 1.22225 0.97375 0.98463 0.88283 1.62003 1.59228 1.02204 1.01578 1.22310 0.95665 0.99401 0.89645 1.21299 0.99628 0.81923 0.97230 1.48146 1.67203 1.07010 1.16227 1.18693 0.76538 0.89116 0.81016 1.90533 1.54422 1.72185 1.35189 1.21482 1.37978 0.90216 1.10641 0.88744 1.27017 0.92264 1.06257 0.93190 1.70198 1.26584 1.39455 1.09271 0.85052 0.80197 0.74880 0.78411 1.18525 1.16877 1.20133 1.21775 0.99063 0.96744 0.82336 1.22689 0.97264 0.88880 0.99650 1.19506 0.94019 0.92681 0.95240 1.21247 1.03165 0.95309 0.97527 1.17344 0.97939 0.78934 0.95554 1.91525 1.90894 1.34328 1.94828 1.21153 1.03314 0.94430 1.02940 1.17356 0.93457 0.90281 0.88835 1.91523 1.72430 1.80747 1.66982 1.21341 1.00360 1.02466 0.93669 0.92141 0.91974 0.91304 0.95528 0.89039 0.96907 0.87831 0.93061 0.91767 0.91699 0.91529 0.89855 0.96499 0.86604 0.82598 0.82470 0.82796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 8.84 71.98 0.64 -1.13 16 2 C -0.05 -0.69 2.09 -11.54 -0.02 -0.72 16 3 H 0.09 1.29 5.77 -2.39 -0.01 1.28 16 4 C 0.06 1.16 4.30 86.30 0.37 1.53 16 5 N -0.53 -12.81 4.05 -894.32 -3.62 -16.43 16 6 C 0.06 1.75 5.62 86.38 0.49 2.24 16 7 C 0.12 4.80 6.61 86.35 0.57 5.37 16 8 N -0.65 -29.45 3.00 -822.12 -2.47 -31.91 16 9 C 0.54 31.51 7.62 86.36 0.66 32.16 16 10 O -0.64 -43.15 14.51 -4.30 -0.06 -43.21 16 11 C -0.57 -31.64 8.74 24.83 0.22 -31.43 16 12 H 0.09 4.66 5.94 -2.91 -0.02 4.64 16 13 C 0.03 1.52 5.50 85.30 0.47 1.99 16 14 N -0.83 -50.74 11.85 21.84 0.26 -50.48 16 15 Si 1.00 40.35 29.56 68.60 2.03 42.37 16 16 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 17 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 18 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 19 C 0.12 4.29 6.47 86.50 0.56 4.85 16 20 C 0.04 1.17 5.26 86.54 0.46 1.62 16 21 C -0.01 -0.19 4.78 -19.88 -0.10 -0.28 16 22 C -0.15 -2.13 8.71 22.32 0.19 -1.93 16 23 C 0.12 1.88 7.30 22.37 0.16 2.05 16 24 F -0.14 -2.35 17.27 44.97 0.78 -1.57 16 25 C -0.20 -2.98 10.01 22.36 0.22 -2.75 16 26 C 0.12 1.92 7.30 22.37 0.16 2.09 16 27 F -0.14 -2.47 17.27 44.97 0.78 -1.69 16 28 C -0.16 -2.31 9.65 22.32 0.22 -2.09 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.76 7.40 -2.39 -0.02 0.75 16 31 H 0.07 1.10 7.66 -2.39 -0.02 1.09 16 32 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.09 1.43 7.44 -2.39 -0.02 1.41 16 34 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.10 2.47 8.11 -2.38 -0.02 2.45 16 36 H 0.05 2.34 7.04 -2.39 -0.02 2.32 16 37 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 38 H 0.27 15.23 8.29 -92.71 -0.77 14.46 16 39 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.08 3.03 5.57 -2.39 -0.01 3.02 16 41 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.12 2.26 5.71 -2.39 -0.01 2.25 16 43 H 0.16 1.74 7.12 -2.91 -0.02 1.72 16 44 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 45 H 0.15 1.83 7.94 -2.91 -0.02 1.81 16 Total: -1.00 -75.80 368.53 3.97 -71.83 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 1.02 Total: 17.54 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 5.26 Total: 13.56 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -5.83 Total: -98.83 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.06 Total: -43.21 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 1.55 Total: -3.26 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.37 kcal Total: -75.80 3.97 -71.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895065358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.771 kcal (2) G-P(sol) polarization free energy of solvation -75.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds