Wall clock time and date at job start Tue Mar 31 2020 21:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47202 * 2 1 4 4 C 1.52999 * 109.47346 * 239.99851 * 2 1 3 5 5 O 1.42900 * 109.47159 * 65.00226 * 4 2 1 6 6 C 1.53001 * 109.47206 * 119.99702 * 2 1 3 7 7 C 1.53039 * 109.46040 * 300.00392 * 6 2 1 8 8 C 1.53192 * 109.31250 * 178.60909 * 7 6 2 9 9 N 1.46927 * 108.77650 * 54.63721 * 8 7 6 10 10 C 1.34767 * 120.63367 * 126.36493 * 9 8 7 11 11 O 1.21591 * 120.00099 * 185.15638 * 10 9 8 12 12 N 1.34787 * 120.00112 * 5.16171 * 10 9 8 13 13 C 1.46492 * 119.99994 * 185.02383 * 12 10 9 14 14 H 1.09004 * 109.47727 * 34.99669 * 13 12 10 15 15 C 1.50697 * 109.47100 * 154.99443 * 13 12 10 16 16 H 1.07997 * 120.00054 * 5.61446 * 15 13 12 17 17 C 1.37886 * 120.00040 * 185.60562 * 15 13 12 18 18 N 1.31506 * 120.00038 * 20.59629 * 17 15 13 19 19 Si 1.86797 * 119.99801 * 200.59614 * 17 15 13 20 20 H 1.48499 * 109.47031 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.47038 * 299.99853 * 19 17 15 22 22 H 1.48498 * 109.47506 * 59.99885 * 19 17 15 23 23 C 1.53005 * 109.47237 * 274.99837 * 13 12 10 24 24 F 1.39898 * 109.46559 * 294.61191 * 23 13 12 25 25 F 1.39896 * 109.47016 * 54.61371 * 23 13 12 26 26 F 1.39901 * 109.47198 * 174.61546 * 23 13 12 27 27 C 1.46928 * 118.73195 * 306.64029 * 9 8 7 28 28 C 1.52753 * 109.01122 * 53.31399 * 27 9 8 29 29 H 1.09001 * 109.47560 * 300.00655 * 1 2 3 30 30 H 1.09006 * 109.46787 * 59.99972 * 1 2 3 31 31 H 1.08995 * 109.47339 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47029 * 185.00495 * 4 2 1 33 33 H 1.08994 * 109.47214 * 304.99962 * 4 2 1 34 34 H 0.96700 * 113.99929 * 179.97438 * 5 4 2 35 35 H 1.09006 * 109.45463 * 59.96923 * 6 2 1 36 36 H 1.09000 * 109.49825 * 58.66230 * 7 6 2 37 37 H 1.08995 * 109.49692 * 298.56138 * 7 6 2 38 38 H 1.09005 * 109.58890 * 294.84367 * 8 7 6 39 39 H 1.09005 * 109.70250 * 174.49156 * 8 7 6 40 40 H 0.97001 * 119.99489 * 5.01975 * 12 10 9 41 41 H 0.97007 * 119.99847 * 355.46136 * 18 17 15 42 42 H 1.09009 * 109.58121 * 173.14222 * 27 9 8 43 43 H 1.08994 * 109.59217 * 293.56601 * 27 9 8 44 44 H 1.08999 * 109.57217 * 185.55232 * 28 27 9 45 45 H 1.09001 * 109.36618 * 65.48974 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.6620 0.0167 -2.4130 6 6 2.0400 -0.7212 1.2493 7 6 1.5296 0.0004 2.4986 8 6 2.0133 -0.7443 3.7469 9 7 3.4751 -0.8771 3.6817 10 6 4.2490 -0.4577 4.7022 11 8 5.4601 -0.4863 4.5984 12 7 3.6804 -0.0065 5.8379 13 6 4.5161 0.5516 6.9038 14 1 5.3580 1.0860 6.4635 15 6 3.6977 1.5036 7.7374 16 1 2.6383 1.6074 7.5549 17 6 4.3013 2.2419 8.7333 18 7 5.6012 2.4394 8.7094 19 14 3.2725 2.9615 10.1164 20 1 4.1527 3.7070 11.0517 21 1 2.2579 3.8859 9.5494 22 1 2.5889 1.8644 10.8474 23 6 5.0384 -0.5819 7.7889 24 9 3.9655 -1.1893 8.4500 25 9 5.6938 -1.5292 6.9951 26 9 5.9334 -0.0634 8.7310 27 6 4.0774 -1.4703 2.4800 28 6 3.5704 -0.7226 1.2483 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1263 -0.7995 -1.2054 33 1 1.6054 -1.7198 -1.2951 34 1 1.9533 -0.3830 -3.2440 35 1 1.6760 -1.7487 1.2493 36 1 0.4399 0.0215 2.4870 37 1 1.9136 1.0205 2.5119 38 1 1.5576 -1.7339 3.7817 39 1 1.7369 -0.1832 4.6397 40 1 2.7179 -0.0515 5.9495 41 1 6.1443 2.0116 8.0289 42 1 5.1628 -1.3860 2.5358 43 1 3.7936 -2.5203 2.4092 44 1 3.9330 -1.2161 0.3466 45 1 3.9350 0.3043 1.2733 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932896958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:16 Heat of formation + Delta-G solvation = -243.939677 kcal Electronic energy + Delta-G solvation = -31482.355200 eV Core-core repulsion = 26698.436566 eV Total energy + Delta-G solvation = -4783.918633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.72284 -46.24896 -46.20134 -40.24916 -38.62534 -36.89315 -34.99625 -34.50860 -32.79353 -31.25934 -30.70167 -28.05597 -26.70315 -24.98598 -24.44233 -23.06607 -22.03990 -21.16730 -20.16690 -19.38206 -18.49056 -17.66523 -17.26716 -17.10403 -16.92396 -16.34058 -15.73161 -15.49278 -14.91563 -14.78809 -14.41067 -14.09981 -14.05922 -13.83275 -13.55275 -13.26681 -13.23297 -13.00460 -12.96159 -12.70391 -12.68588 -12.54367 -12.40023 -12.33830 -12.21165 -12.10972 -11.80957 -11.38932 -11.32240 -11.24799 -10.98689 -10.83196 -10.76389 -10.51642 -10.43792 -10.20842 -10.11537 -9.59657 -9.47129 -8.59984 -8.44255 -8.20508 -6.74223 -4.50572 2.97174 3.30841 3.37431 3.54537 3.62030 3.85829 4.18290 4.30253 4.35609 4.44430 4.54317 4.70838 4.79201 4.94242 4.98189 5.01618 5.11212 5.23029 5.26993 5.29229 5.37744 5.50026 5.51879 5.57027 5.62069 5.65799 5.70867 5.74824 5.77642 5.85678 5.91682 5.97353 5.99761 6.12557 6.29018 6.55391 6.74276 7.07318 7.20789 7.30241 7.49953 8.08474 8.41555 8.50930 9.07506 9.22190 10.62702 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.018308 B = 0.003013 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.031193 B = 9290.237233 C =10088.277997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.077 0.923 4 C 0.077 3.923 5 O -0.574 6.574 6 C -0.079 4.079 7 C -0.129 4.129 8 C 0.111 3.889 9 N -0.633 5.633 10 C 0.703 3.297 11 O -0.584 6.584 12 N -0.721 5.721 13 C 0.252 3.748 14 H 0.077 0.923 15 C -0.638 4.638 16 H 0.072 0.928 17 C 0.039 3.961 18 N -0.857 5.857 19 Si 1.072 2.928 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.281 1.281 23 C 0.414 3.586 24 F -0.196 7.196 25 F -0.204 7.204 26 F -0.179 7.179 27 C 0.131 3.869 28 C -0.134 4.134 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.377 0.623 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.279 0.721 42 H 0.094 0.906 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.844 -7.257 -16.461 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 H 0.096 0.904 4 C -0.001 4.001 5 O -0.379 6.379 6 C -0.097 4.097 7 C -0.167 4.167 8 C -0.012 4.012 9 N -0.372 5.372 10 C 0.404 3.596 11 O -0.461 6.461 12 N -0.375 5.375 13 C 0.145 3.855 14 H 0.094 0.906 15 C -0.674 4.674 16 H 0.090 0.910 17 C -0.173 4.173 18 N -0.487 5.487 19 Si 0.898 3.102 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.207 1.207 23 C 0.357 3.643 24 F -0.178 7.178 25 F -0.185 7.185 26 F -0.161 7.161 27 C 0.008 3.992 28 C -0.172 4.172 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.224 0.776 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.232 0.768 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.063 -5.932 -14.699 18.259 hybrid contribution -0.220 -1.740 -1.562 2.348 sum -9.283 -7.672 -16.261 20.235 Atomic orbital electron populations 1.21822 0.94648 1.01663 1.02100 1.21143 0.96520 1.00434 0.92398 0.90410 1.22351 0.98301 0.93999 0.85448 1.86477 1.81563 1.53476 1.16417 1.21115 0.95370 0.99598 0.93644 1.22006 1.00958 1.00080 0.93685 1.21600 0.80638 1.00329 0.98662 1.47212 1.05847 1.66422 1.17712 1.15988 0.85278 0.77928 0.80370 1.90898 1.11969 1.61356 1.81920 1.45253 1.10583 1.65999 1.15671 1.19590 0.94468 0.87437 0.84013 0.90556 1.21659 0.96941 1.27935 1.20856 0.90994 1.25992 0.97413 0.94644 0.99261 1.70744 1.06253 1.35349 1.36327 0.83498 0.74859 0.76346 0.75475 1.20366 1.21033 1.20722 1.23097 0.75138 0.84904 0.81113 1.93017 1.56781 1.85184 1.82795 1.93101 1.82523 1.68736 1.74164 1.93137 1.69237 1.86405 1.67294 1.21268 0.99900 0.95411 0.82633 1.22024 0.95210 1.02034 0.97930 0.92241 0.92180 0.92995 0.93202 0.93816 0.77647 0.90880 0.90369 0.91105 0.91692 0.89990 0.76818 0.90903 0.88813 0.92291 0.90829 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.74 37.15 0.32 -0.85 16 2 C -0.09 -0.74 2.21 -90.62 -0.20 -0.94 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.08 0.58 6.21 37.16 0.23 0.81 16 5 O -0.57 -4.76 13.19 -35.23 -0.46 -5.22 16 6 C -0.08 -0.68 1.74 -90.58 -0.16 -0.84 16 7 C -0.13 -1.25 5.04 -26.61 -0.13 -1.39 16 8 C 0.11 1.29 6.35 -3.71 -0.02 1.27 16 9 N -0.63 -9.60 2.98 -178.76 -0.53 -10.13 16 10 C 0.70 14.31 7.80 -86.92 -0.68 13.63 16 11 O -0.58 -14.07 14.16 5.29 0.07 -14.00 16 12 N -0.72 -15.05 4.89 -59.81 -0.29 -15.34 16 13 C 0.25 6.28 1.91 -69.09 -0.13 6.15 16 14 H 0.08 2.12 6.68 -51.93 -0.35 1.77 16 15 C -0.64 -16.46 8.21 -34.44 -0.28 -16.75 16 16 H 0.07 1.77 7.80 -52.49 -0.41 1.36 16 17 C 0.04 1.05 4.73 -17.82 -0.08 0.97 16 18 N -0.86 -24.47 12.45 55.43 0.69 -23.78 16 19 Si 1.07 23.56 29.95 -169.99 -5.09 18.47 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 C 0.41 10.50 2.82 37.16 0.10 10.61 16 24 F -0.20 -4.80 16.87 2.25 0.04 -4.76 16 25 F -0.20 -5.13 15.34 2.25 0.03 -5.10 16 26 F -0.18 -4.84 14.14 2.25 0.03 -4.80 16 27 C 0.13 1.67 6.41 -3.94 -0.03 1.65 16 28 C -0.13 -1.33 5.04 -26.84 -0.14 -1.47 16 29 H 0.06 0.46 6.40 -51.93 -0.33 0.13 16 30 H 0.06 0.53 7.82 -51.93 -0.41 0.13 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.35 6.14 -51.93 -0.32 0.03 16 33 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.38 1.45 9.12 45.56 0.42 1.87 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.63 6.36 -51.93 -0.33 0.30 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.98 5.73 -51.93 -0.30 0.69 16 40 H 0.40 7.22 6.11 -40.82 -0.25 6.97 16 41 H 0.28 8.13 6.01 -40.82 -0.25 7.88 16 42 H 0.09 1.40 7.00 -51.92 -0.36 1.04 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.59 6.25 -51.93 -0.32 0.27 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 359.08 15.07 5.41 5.41 Total: -1.00 -32.53 359.08 -6.68 -39.21 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.39 Total: 7.19 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: -1.19 Total: 12.85 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.13 Total: -49.25 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.39 Total: -19.22 kcal Atomic # 9 Polarization: -14.77 SS G_CDS: 0.10 Total: -14.66 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.09 Total: 18.47 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.53 -6.68 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932896958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.726 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds