Wall clock time and date at job start Tue Mar 31 2020 20:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99744 * 2 1 4 4 C 1.53003 * 109.46796 * 54.67677 * 3 2 1 5 5 C 1.53004 * 109.47086 * 174.67097 * 3 2 1 6 6 H 1.08999 * 109.47063 * 184.99839 * 5 3 2 7 7 C 1.52998 * 109.47136 * 305.00603 * 5 3 2 8 8 N 1.46502 * 109.47032 * 65.00251 * 5 3 2 9 9 C 1.34771 * 120.00120 * 154.99976 * 8 5 3 10 10 O 1.21591 * 119.99836 * 359.97438 * 9 8 5 11 11 N 1.34781 * 120.00174 * 180.02562 * 9 8 5 12 12 C 1.46502 * 120.00023 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46847 * 34.99568 * 12 11 9 14 14 C 1.50692 * 109.46983 * 154.99843 * 12 11 9 15 15 H 1.07999 * 120.00507 * 359.97438 * 14 12 11 16 16 C 1.37882 * 119.99734 * 180.02562 * 14 12 11 17 17 N 1.31507 * 120.00218 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99706 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47052 * 59.99814 * 18 16 14 20 20 H 1.48506 * 109.46834 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47247 * 299.99723 * 18 16 14 22 22 C 1.52999 * 109.46992 * 274.99932 * 12 11 9 23 23 F 1.39904 * 109.46794 * 299.99869 * 22 12 11 24 24 F 1.39902 * 109.47298 * 180.02562 * 22 12 11 25 25 F 1.39897 * 109.47183 * 59.99815 * 22 12 11 26 26 C 1.52995 * 109.47253 * 294.67049 * 3 2 1 27 27 C 1.53002 * 117.49655 * 135.80086 * 26 3 2 28 28 C 1.53003 * 117.49566 * 67.14381 * 26 3 2 29 29 H 1.08999 * 109.47409 * 308.14000 * 1 2 3 30 30 H 1.09005 * 109.47025 * 68.14327 * 1 2 3 31 31 H 1.09004 * 109.46617 * 188.13723 * 1 2 3 32 32 H 1.09002 * 109.46745 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.46520 * 299.99239 * 4 3 2 34 34 H 1.08994 * 109.47658 * 59.99699 * 4 3 2 35 35 H 1.08999 * 109.47769 * 59.99668 * 7 5 3 36 36 H 1.09007 * 109.47199 * 180.02562 * 7 5 3 37 37 H 1.09004 * 109.47026 * 299.99782 * 7 5 3 38 38 H 0.97004 * 119.99830 * 335.00256 * 8 5 3 39 39 H 0.96995 * 119.99729 * 359.97438 * 11 9 8 40 40 H 0.96999 * 120.00402 * 180.02562 * 17 16 14 41 41 H 1.09000 * 115.55593 * 281.47245 * 26 3 2 42 42 H 1.09004 * 117.50061 * 0.02562 * 27 26 3 43 43 H 1.08999 * 117.50109 * 145.02335 * 27 26 3 44 44 H 1.08999 * 117.49788 * 214.97206 * 28 26 3 45 45 H 1.09000 * 117.50313 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4556 2.1106 1.1770 5 6 3.5297 1.1873 0.1340 6 1 3.9651 2.1826 0.2232 7 6 3.8696 0.3681 1.3807 8 7 4.0741 0.5208 -1.0516 9 6 5.3534 0.7351 -1.4175 10 8 6.0556 1.4821 -0.7638 11 7 5.8540 0.1223 -2.5085 12 6 7.2448 0.3550 -2.9059 13 1 7.8614 0.4774 -2.0154 14 6 7.7428 -0.8223 -3.7039 15 1 7.0890 -1.6602 -3.8956 16 6 9.0337 -0.8302 -4.1885 17 7 9.8300 0.1899 -3.9547 18 14 9.6508 -2.2893 -5.1783 19 1 8.8110 -2.4550 -6.3917 20 1 11.0606 -2.0535 -5.5810 21 1 9.5712 -3.5189 -4.3496 22 6 7.3260 1.6215 -3.7605 23 9 6.5345 1.4643 -4.9033 24 9 8.6540 1.8434 -4.1404 25 9 6.8636 2.7144 -3.0196 26 6 1.6676 2.0163 -1.3108 27 6 1.2206 3.4772 -1.2263 28 6 0.2020 2.3825 -1.5536 29 1 -0.3634 0.6346 0.8082 30 1 -0.3633 0.3826 -0.9538 31 1 -0.3633 -1.0174 0.1455 32 1 1.8992 3.1062 1.1772 33 1 0.3730 2.1948 1.0815 34 1 1.6997 1.6042 2.1108 35 1 3.4342 -0.6272 1.2914 36 1 4.9522 0.2842 1.4764 37 1 3.4646 0.8640 2.2628 38 1 3.5137 -0.0749 -1.5734 39 1 5.2937 -0.4732 -3.0302 40 1 10.7380 0.1846 -4.2959 41 1 2.2624 1.7212 -2.1751 42 1 1.1711 3.9320 -0.2369 43 1 1.5212 4.1430 -2.0352 44 1 -0.1671 2.3287 -2.5778 45 1 -0.5182 2.1166 -0.7798 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932898165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:02 Heat of formation + Delta-G solvation = -175.094659 kcal Electronic energy + Delta-G solvation = -32064.153974 eV Core-core repulsion = 27283.220685 eV Total energy + Delta-G solvation = -4780.933289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.26693 -45.91900 -45.53879 -40.52453 -38.98061 -36.07845 -35.33642 -34.25513 -32.60207 -31.48434 -28.90864 -27.77171 -27.49335 -24.98476 -24.47559 -22.74739 -22.14505 -21.20246 -20.05476 -19.50357 -18.30743 -17.08048 -16.82387 -16.66260 -16.52436 -16.46259 -15.74951 -15.39927 -15.00757 -14.89665 -14.56123 -14.37573 -14.00424 -13.56663 -13.25860 -12.97472 -12.83580 -12.79516 -12.52854 -12.44414 -12.32100 -12.21923 -12.18428 -12.15772 -11.90028 -11.74624 -11.63285 -11.37052 -11.15421 -11.10020 -10.98609 -10.83314 -10.71866 -10.35438 -10.32350 -10.26451 -9.61540 -9.56354 -9.43089 -8.69626 -8.64024 -8.08114 -6.18705 -4.42168 3.20362 3.23213 3.27920 3.30685 3.41328 3.76275 3.90820 4.23183 4.33575 4.52897 4.63264 4.71383 4.80304 4.86174 4.95160 4.98554 5.06291 5.16967 5.27302 5.34257 5.41090 5.48830 5.52166 5.60200 5.66293 5.67971 5.84682 5.89825 5.91419 5.95331 5.96124 6.06594 6.16818 6.29850 6.48556 6.90647 6.93900 7.06921 7.30247 7.45484 7.67987 7.79078 8.54963 8.76649 9.21473 9.34705 10.72893 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.018353 B = 0.003353 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.234238 B = 8347.926291 C = 8730.725474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.368 6.368 3 C 0.139 3.861 4 C -0.184 4.184 5 C 0.186 3.814 6 H 0.098 0.902 7 C -0.162 4.162 8 N -0.743 5.743 9 C 0.699 3.301 10 O -0.586 6.586 11 N -0.727 5.727 12 C 0.263 3.737 13 H 0.085 0.915 14 C -0.551 4.551 15 H 0.076 0.924 16 C 0.065 3.935 17 N -0.840 5.840 18 Si 0.915 3.085 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.416 3.584 23 F -0.211 7.211 24 F -0.138 7.138 25 F -0.216 7.216 26 C -0.175 4.175 27 C -0.175 4.175 28 C -0.185 4.185 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.396 0.604 39 H 0.393 0.607 40 H 0.268 0.732 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.580 1.683 6.946 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.287 6.287 3 C 0.100 3.900 4 C -0.242 4.242 5 C 0.080 3.920 6 H 0.116 0.884 7 C -0.220 4.220 8 N -0.399 5.399 9 C 0.399 3.601 10 O -0.464 6.464 11 N -0.380 5.380 12 C 0.157 3.843 13 H 0.102 0.898 14 C -0.588 4.588 15 H 0.094 0.906 16 C -0.144 4.144 17 N -0.473 5.473 18 Si 0.741 3.259 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.198 1.198 22 C 0.359 3.641 23 F -0.193 7.193 24 F -0.119 7.119 25 F -0.198 7.198 26 C -0.193 4.193 27 C -0.212 4.212 28 C -0.221 4.221 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.230 0.770 39 H 0.227 0.773 40 H 0.079 0.921 41 H 0.132 0.868 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.558 2.332 7.505 19.236 hybrid contribution -0.414 -0.749 -1.341 1.591 sum -17.972 1.582 6.164 19.065 Atomic orbital electron populations 1.23077 0.81938 1.02332 1.00687 1.87984 1.19274 1.26601 1.94826 1.21222 0.93275 0.83241 0.92309 1.22571 1.01588 1.01369 0.98655 1.20606 0.88375 0.97790 0.85210 0.88438 1.22181 1.02565 1.00832 0.96459 1.45081 1.11810 1.52114 1.30939 1.16071 0.81601 0.80864 0.81526 1.90903 1.58681 1.40922 1.55858 1.45257 1.14762 1.49730 1.28218 1.19564 0.78681 0.90504 0.95558 0.89777 1.20845 0.98339 1.02808 1.36827 0.90593 1.25071 0.96558 0.96721 0.96017 1.70393 1.07086 1.27515 1.42342 0.86285 0.77880 0.81673 0.80051 1.19889 1.20912 1.19812 1.23197 0.74472 0.86860 0.79543 1.92980 1.75682 1.95945 1.54691 1.93398 1.32013 1.94974 1.91556 1.93069 1.89519 1.59880 1.77372 1.22891 0.97884 0.98303 1.00252 1.23120 1.03303 0.91307 1.03486 1.23165 0.92187 1.04032 1.02750 0.93791 0.92798 0.90179 0.90588 0.91628 0.90915 0.91728 0.91709 0.92228 0.77039 0.77329 0.92124 0.86820 0.88103 0.88635 0.88691 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.26 101.05 0.94 1.06 16 2 O -0.37 -3.95 9.20 -35.23 -0.32 -4.27 16 3 C 0.14 1.48 0.47 -90.62 -0.04 1.43 16 4 C -0.18 -1.56 6.57 37.16 0.24 -1.32 16 5 C 0.19 2.53 1.95 -67.93 -0.13 2.40 16 6 H 0.10 1.50 7.58 -51.93 -0.39 1.11 16 7 C -0.16 -2.11 9.04 37.16 0.34 -1.77 16 8 N -0.74 -11.46 4.15 -58.67 -0.24 -11.70 16 9 C 0.70 14.22 8.06 -86.92 -0.70 13.52 16 10 O -0.59 -14.16 14.57 5.29 0.08 -14.08 16 11 N -0.73 -15.24 4.99 -59.81 -0.30 -15.54 16 12 C 0.26 6.67 2.21 -69.09 -0.15 6.52 16 13 H 0.08 2.39 7.58 -51.93 -0.39 2.00 16 14 C -0.55 -14.23 8.46 -34.44 -0.29 -14.52 16 15 H 0.08 1.85 7.74 -52.49 -0.41 1.44 16 16 C 0.07 1.71 5.20 -17.82 -0.09 1.62 16 17 N -0.84 -23.29 9.50 55.43 0.53 -22.76 16 18 Si 0.91 20.29 29.54 -169.99 -5.02 15.27 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 22 C 0.42 10.87 2.81 37.16 0.10 10.97 16 23 F -0.21 -5.30 16.94 2.25 0.04 -5.26 16 24 F -0.14 -3.89 12.91 2.25 0.03 -3.86 16 25 F -0.22 -5.64 15.67 2.25 0.04 -5.60 16 26 C -0.17 -1.86 5.00 -90.62 -0.45 -2.31 16 27 C -0.18 -1.65 9.69 -26.69 -0.26 -1.91 16 28 C -0.18 -1.55 7.86 -26.69 -0.21 -1.76 16 29 H 0.04 0.30 5.76 -51.93 -0.30 0.00 16 30 H 0.05 0.40 5.28 -51.93 -0.27 0.13 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.62 6.65 -51.93 -0.35 0.28 16 33 H 0.06 0.47 5.13 -51.93 -0.27 0.20 16 34 H 0.07 0.60 6.56 -51.93 -0.34 0.26 16 35 H 0.06 0.83 7.56 -51.93 -0.39 0.44 16 36 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 37 H 0.06 0.64 6.57 -51.93 -0.34 0.30 16 38 H 0.40 5.37 8.14 -40.82 -0.33 5.03 16 39 H 0.39 7.18 8.55 -40.82 -0.35 6.83 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.11 1.42 7.25 -51.93 -0.38 1.05 16 42 H 0.10 0.84 5.89 -51.93 -0.31 0.53 16 43 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.10 0.69 5.14 -51.93 -0.27 0.43 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -30.80 357.63 -6.41 -37.21 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -5.91 Total: 11.29 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: -0.71 Total: 13.92 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.02 Total: -50.01 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.25 Total: -18.35 kcal Atomic # 9 Polarization: -14.83 SS G_CDS: 0.10 Total: -14.73 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.80 -6.41 -37.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932898165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.882 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds