Wall clock time and date at job start Tue Mar 31 2020 21:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46943 * 2 1 4 4 C 1.52997 * 109.47070 * 240.00377 * 2 1 3 5 5 O 1.42897 * 109.47442 * 177.66322 * 4 2 1 6 6 N 1.46498 * 109.47054 * 120.00221 * 2 1 3 7 7 C 1.46493 * 119.99782 * 56.17727 * 6 2 1 8 8 C 1.53001 * 109.47361 * 89.99800 * 7 6 2 9 9 C 1.53784 * 113.61653 * 184.99738 * 8 7 6 10 10 C 1.53782 * 87.17425 * 220.06142 * 9 8 7 11 11 C 1.53782 * 87.08075 * 25.39106 * 10 9 8 12 12 C 1.34780 * 119.99887 * 236.17222 * 6 2 1 13 13 O 1.21585 * 119.99749 * 184.86354 * 12 6 2 14 14 N 1.34775 * 120.00084 * 4.86435 * 12 6 2 15 15 C 1.46500 * 120.00185 * 185.02782 * 14 12 6 16 16 H 1.09005 * 109.46914 * 34.99492 * 15 14 12 17 17 C 1.50695 * 109.47563 * 154.99792 * 15 14 12 18 18 H 1.08005 * 119.99790 * 95.20689 * 17 15 14 19 19 C 1.37875 * 119.99949 * 275.21634 * 17 15 14 20 20 N 1.31516 * 119.99438 * 185.26965 * 19 17 15 21 21 Si 1.86802 * 120.00258 * 5.26229 * 19 17 15 22 22 H 1.48495 * 109.47059 * 94.73441 * 21 19 17 23 23 H 1.48494 * 109.47255 * 214.73707 * 21 19 17 24 24 H 1.48497 * 109.46962 * 334.73733 * 21 19 17 25 25 C 1.52999 * 109.46977 * 275.00155 * 15 14 12 26 26 F 1.39902 * 109.47568 * 65.11867 * 25 15 14 27 27 F 1.39898 * 109.47436 * 185.12375 * 25 15 14 28 28 F 1.39902 * 109.47075 * 305.12384 * 25 15 14 29 29 H 1.09008 * 109.46836 * 304.43849 * 1 2 3 30 30 H 1.08996 * 109.47227 * 64.43309 * 1 2 3 31 31 H 1.08991 * 109.47267 * 184.43701 * 1 2 3 32 32 H 1.09002 * 109.47377 * 297.66746 * 4 2 1 33 33 H 1.08998 * 109.47154 * 57.66149 * 4 2 1 34 34 H 0.96693 * 114.00101 * 179.97438 * 5 4 2 35 35 H 1.09000 * 109.47787 * 329.99494 * 7 6 2 36 36 H 1.09006 * 109.47198 * 209.99857 * 7 6 2 37 37 H 1.08996 * 112.90769 * 316.24931 * 8 7 6 38 38 H 1.08992 * 113.61284 * 105.46767 * 9 8 7 39 39 H 1.09007 * 113.61060 * 334.64865 * 9 8 7 40 40 H 1.09001 * 113.61104 * 139.93766 * 10 9 8 41 41 H 1.08994 * 113.61272 * 270.84352 * 10 9 8 42 42 H 1.08997 * 113.61469 * 89.11698 * 11 10 9 43 43 H 1.08996 * 113.61514 * 219.93394 * 11 10 9 44 44 H 0.97004 * 119.99834 * 5.02539 * 14 12 6 45 45 H 0.97010 * 119.99324 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 3.4679 -0.6738 -1.2771 6 7 2.0184 -0.6906 1.1961 7 6 1.5967 -2.0664 1.4710 8 6 2.5797 -3.0410 0.8192 9 6 2.1604 -4.5152 0.9451 10 6 3.6423 -4.8357 1.2021 11 6 3.7852 -3.3913 1.7104 12 6 2.8556 -0.0603 2.0436 13 8 3.3307 -0.6611 2.9879 14 7 3.1662 1.2359 1.8444 15 6 4.1599 1.8908 2.6987 16 1 4.9388 1.1757 2.9639 17 6 4.7738 3.0503 1.9575 18 1 4.3820 4.0474 2.0949 19 6 5.8354 2.8384 1.1037 20 7 6.4377 3.8610 0.5369 21 14 6.4185 1.0989 0.7521 22 1 5.7725 0.6017 -0.4891 23 1 7.8931 1.0969 0.5776 24 1 6.0533 0.2153 1.8883 25 6 3.4813 2.4009 3.9716 26 9 3.0133 1.3143 4.7182 27 9 4.4034 3.1272 4.7328 28 9 2.4064 3.2277 3.6277 29 1 -0.3633 0.5812 0.8476 30 1 -0.3633 0.4435 -0.9270 31 1 -0.3633 -1.0245 0.0795 32 1 1.7113 -1.7602 -1.2287 33 1 1.6429 -0.2321 -2.1387 34 1 3.8611 -1.1131 -2.0435 35 1 0.5992 -2.2292 1.0628 36 1 1.5801 -2.2331 2.5481 37 1 2.8558 -2.7507 -0.1944 38 1 1.7761 -4.9405 0.0180 39 1 1.5158 -4.7142 1.8013 40 1 3.7986 -5.5881 1.9752 41 1 4.2095 -5.0368 0.2934 42 1 3.5850 -3.2817 2.7762 43 1 4.7133 -2.9098 1.4024 44 1 2.7318 1.7353 1.1353 45 1 7.1849 3.7119 -0.0635 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932907211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:58 Heat of formation + Delta-G solvation = -207.817885 kcal Electronic energy + Delta-G solvation = -33069.104138 eV Core-core repulsion = 28286.751863 eV Total energy + Delta-G solvation = -4782.352275 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.92958 -46.44852 -46.41277 -40.13347 -38.29999 -37.18382 -35.20019 -34.62155 -32.41717 -31.17514 -29.52138 -27.33698 -26.18746 -25.38622 -24.85112 -22.99143 -21.87382 -21.00064 -19.35232 -19.05017 -18.47726 -17.47792 -17.38497 -17.24877 -16.68808 -16.34514 -15.76139 -15.28777 -15.26265 -14.63582 -14.45371 -14.14551 -13.78979 -13.62261 -13.40278 -13.31090 -13.01632 -12.89222 -12.73767 -12.65918 -12.62304 -12.53664 -12.44345 -12.27350 -12.25424 -12.00602 -11.72512 -11.58214 -11.21863 -10.99649 -10.83296 -10.57686 -10.51637 -10.24276 -10.00836 -9.92494 -9.86886 -9.65485 -9.40357 -8.87414 -8.39875 -8.00545 -6.42329 -4.57458 3.08729 3.29055 3.37095 3.47040 3.77821 4.07048 4.16662 4.25724 4.37857 4.74329 4.78143 4.83766 4.94511 5.00791 5.04695 5.09318 5.27014 5.31355 5.34125 5.35112 5.38968 5.43619 5.56882 5.63098 5.67773 5.69918 5.80840 5.89968 5.93136 5.93931 6.03727 6.17525 6.34635 6.44253 6.48523 6.70066 6.92990 7.06166 7.35955 7.52649 7.70427 8.00741 8.60680 8.73463 9.13767 9.33496 10.65178 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011279 B = 0.005532 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.834526 B = 5060.175908 C = 5555.536620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 H 0.097 0.903 4 C 0.062 3.938 5 O -0.552 6.552 6 N -0.621 5.621 7 C 0.143 3.857 8 C -0.128 4.128 9 C -0.134 4.134 10 C -0.146 4.146 11 C -0.119 4.119 12 C 0.700 3.300 13 O -0.585 6.585 14 N -0.729 5.729 15 C 0.216 3.784 16 H 0.095 0.905 17 C -0.534 4.534 18 H 0.091 0.909 19 C 0.100 3.900 20 N -0.864 5.864 21 Si 0.872 3.128 22 H -0.254 1.254 23 H -0.289 1.289 24 H -0.254 1.254 25 C 0.438 3.562 26 F -0.192 7.192 27 F -0.185 7.185 28 F -0.195 7.195 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.372 0.628 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.393 0.607 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.870 -12.617 -5.318 17.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.030 3.970 3 H 0.115 0.885 4 C -0.017 4.017 5 O -0.356 6.356 6 N -0.358 5.358 7 C 0.020 3.980 8 C -0.148 4.148 9 C -0.172 4.172 10 C -0.184 4.184 11 C -0.157 4.157 12 C 0.402 3.598 13 O -0.463 6.463 14 N -0.386 5.386 15 C 0.112 3.888 16 H 0.112 0.888 17 C -0.572 4.572 18 H 0.109 0.891 19 C -0.110 4.110 20 N -0.497 5.497 21 Si 0.697 3.303 22 H -0.179 1.179 23 H -0.216 1.216 24 H -0.178 1.178 25 C 0.383 3.617 26 F -0.174 7.174 27 F -0.166 7.166 28 F -0.177 7.177 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.218 0.782 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.231 0.769 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.461 -12.613 -4.144 16.902 hybrid contribution 0.090 -0.734 -1.110 1.333 sum -10.371 -13.347 -5.254 17.700 Atomic orbital electron populations 1.22097 0.94141 1.02708 1.02933 1.21065 0.93883 0.97540 0.84523 0.88532 1.22635 0.82456 0.99367 0.97219 1.86741 1.18694 1.80742 1.49419 1.47103 1.50589 1.14085 1.24037 1.21238 0.95971 0.79789 1.01026 1.23148 0.97376 0.93677 1.00564 1.22887 0.96762 0.96299 1.01282 1.22839 0.96573 0.98034 1.00914 1.22839 0.98377 0.94276 1.00199 1.16283 0.78977 0.82507 0.82027 1.90862 1.56701 1.66553 1.32182 1.46979 1.45386 1.08987 1.37276 1.20143 0.87425 0.95943 0.85313 0.88780 1.20756 1.16004 0.92984 1.27411 0.89146 1.24960 0.94517 0.97694 0.93811 1.69898 1.20908 1.30873 1.28053 0.86861 0.77590 0.84394 0.81416 1.17850 1.21572 1.17803 1.21702 0.76842 0.75098 0.88102 1.93149 1.89512 1.55143 1.79596 1.93098 1.66593 1.78805 1.78134 1.93053 1.58364 1.73908 1.92375 0.91290 0.91339 0.91939 0.93315 0.93256 0.78214 0.91328 0.90054 0.88833 0.92136 0.90294 0.91924 0.90864 0.89525 0.92127 0.76946 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.20 37.16 0.34 -1.21 16 2 C 0.14 1.76 2.92 -67.93 -0.20 1.56 16 3 H 0.10 1.43 5.48 -51.93 -0.28 1.14 16 4 C 0.06 0.71 5.70 37.16 0.21 0.92 16 5 O -0.55 -7.96 12.83 -35.23 -0.45 -8.41 16 6 N -0.62 -9.87 2.31 -171.80 -0.40 -10.26 16 7 C 0.14 1.94 4.73 -4.04 -0.02 1.92 16 8 C -0.13 -1.66 3.52 -89.71 -0.32 -1.97 16 9 C -0.13 -1.40 7.64 -25.92 -0.20 -1.59 16 10 C -0.15 -1.69 8.08 -25.92 -0.21 -1.90 16 11 C -0.12 -1.80 6.85 -25.82 -0.18 -1.98 16 12 C 0.70 14.40 7.98 -86.92 -0.69 13.71 16 13 O -0.59 -13.69 13.29 5.29 0.07 -13.62 16 14 N -0.73 -15.60 4.31 -59.81 -0.26 -15.86 16 15 C 0.22 5.21 1.41 -69.08 -0.10 5.11 16 16 H 0.09 2.46 5.16 -51.93 -0.27 2.20 16 17 C -0.53 -14.12 8.53 -34.44 -0.29 -14.42 16 18 H 0.09 2.58 8.00 -52.48 -0.42 2.16 16 19 C 0.10 2.69 5.47 -17.82 -0.10 2.60 16 20 N -0.86 -24.42 13.96 55.43 0.77 -23.64 16 21 Si 0.87 21.15 27.41 -169.99 -4.66 16.49 16 22 H -0.25 -6.02 7.11 56.52 0.40 -5.61 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.25 -6.44 5.91 56.52 0.33 -6.11 16 25 C 0.44 10.25 2.83 37.16 0.11 10.35 16 26 F -0.19 -4.49 15.63 2.25 0.04 -4.45 16 27 F -0.18 -4.38 16.89 2.25 0.04 -4.35 16 28 F -0.20 -4.38 16.93 2.25 0.04 -4.35 16 29 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.53 6.35 -51.93 -0.33 0.20 16 32 H 0.05 0.48 6.17 -51.93 -0.32 0.16 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.37 3.77 9.12 45.56 0.42 4.18 16 35 H 0.07 0.73 6.15 -51.93 -0.32 0.41 16 36 H 0.08 1.25 7.20 -51.93 -0.37 0.87 16 37 H 0.09 1.23 5.08 -51.93 -0.26 0.96 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.78 8.10 -51.92 -0.42 0.35 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 1.44 7.66 -51.93 -0.40 1.05 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.39 7.83 6.02 -40.82 -0.25 7.59 16 45 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -31.86 364.34 -6.35 -38.21 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -5.39 Total: 11.65 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: -1.64 Total: 13.10 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.12 Total: -49.76 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.38 Total: -22.03 kcal Atomic # 9 Polarization: -13.26 SS G_CDS: 0.11 Total: -13.15 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.66 Total: 16.49 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.86 -6.35 -38.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932907211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.609 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds