Wall clock time and date at job start Tue Mar 31 2020 21:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46943 * 2 1 4 4 C 1.52997 * 109.47070 * 240.00377 * 2 1 3 5 5 O 1.42897 * 109.47442 * 177.66322 * 4 2 1 6 6 N 1.46498 * 109.47054 * 120.00221 * 2 1 3 7 7 C 1.46493 * 119.99782 * 56.17727 * 6 2 1 8 8 C 1.53001 * 109.47361 * 89.99800 * 7 6 2 9 9 C 1.53784 * 113.61653 * 184.99738 * 8 7 6 10 10 C 1.53782 * 87.17425 * 220.06142 * 9 8 7 11 11 C 1.53782 * 87.08075 * 25.39106 * 10 9 8 12 12 C 1.34780 * 119.99887 * 236.17222 * 6 2 1 13 13 O 1.21585 * 119.99749 * 184.86354 * 12 6 2 14 14 N 1.34775 * 120.00084 * 4.86435 * 12 6 2 15 15 C 1.46500 * 120.00185 * 185.02782 * 14 12 6 16 16 H 1.09005 * 109.46914 * 34.99492 * 15 14 12 17 17 C 1.50695 * 109.47563 * 154.99792 * 15 14 12 18 18 H 1.08005 * 119.99790 * 95.20689 * 17 15 14 19 19 C 1.37875 * 119.99949 * 275.21634 * 17 15 14 20 20 N 1.31516 * 119.99438 * 185.26965 * 19 17 15 21 21 Si 1.86802 * 120.00258 * 5.26229 * 19 17 15 22 22 H 1.48495 * 109.47059 * 94.73441 * 21 19 17 23 23 H 1.48494 * 109.47255 * 214.73707 * 21 19 17 24 24 H 1.48497 * 109.46962 * 334.73733 * 21 19 17 25 25 C 1.52999 * 109.46977 * 275.00155 * 15 14 12 26 26 F 1.39902 * 109.47568 * 65.11867 * 25 15 14 27 27 F 1.39898 * 109.47436 * 185.12375 * 25 15 14 28 28 F 1.39902 * 109.47075 * 305.12384 * 25 15 14 29 29 H 1.09008 * 109.46836 * 304.43849 * 1 2 3 30 30 H 1.08996 * 109.47227 * 64.43309 * 1 2 3 31 31 H 1.08991 * 109.47267 * 184.43701 * 1 2 3 32 32 H 1.09002 * 109.47377 * 297.66746 * 4 2 1 33 33 H 1.08998 * 109.47154 * 57.66149 * 4 2 1 34 34 H 0.96693 * 114.00101 * 179.97438 * 5 4 2 35 35 H 1.09000 * 109.47787 * 329.99494 * 7 6 2 36 36 H 1.09006 * 109.47198 * 209.99857 * 7 6 2 37 37 H 1.08996 * 112.90769 * 316.24931 * 8 7 6 38 38 H 1.08992 * 113.61284 * 105.46767 * 9 8 7 39 39 H 1.09007 * 113.61060 * 334.64865 * 9 8 7 40 40 H 1.09001 * 113.61104 * 139.93766 * 10 9 8 41 41 H 1.08994 * 113.61272 * 270.84352 * 10 9 8 42 42 H 1.08997 * 113.61469 * 89.11698 * 11 10 9 43 43 H 1.08996 * 113.61514 * 219.93394 * 11 10 9 44 44 H 0.97004 * 119.99834 * 5.02539 * 14 12 6 45 45 H 0.97010 * 119.99324 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 3.4679 -0.6738 -1.2771 6 7 2.0184 -0.6906 1.1961 7 6 1.5967 -2.0664 1.4710 8 6 2.5797 -3.0410 0.8192 9 6 2.1604 -4.5152 0.9451 10 6 3.6423 -4.8357 1.2021 11 6 3.7852 -3.3913 1.7104 12 6 2.8556 -0.0603 2.0436 13 8 3.3307 -0.6611 2.9879 14 7 3.1662 1.2359 1.8444 15 6 4.1599 1.8908 2.6987 16 1 4.9388 1.1757 2.9639 17 6 4.7738 3.0503 1.9575 18 1 4.3820 4.0474 2.0949 19 6 5.8354 2.8384 1.1037 20 7 6.4377 3.8610 0.5369 21 14 6.4185 1.0989 0.7521 22 1 5.7725 0.6017 -0.4891 23 1 7.8931 1.0969 0.5776 24 1 6.0533 0.2153 1.8883 25 6 3.4813 2.4009 3.9716 26 9 3.0133 1.3143 4.7182 27 9 4.4034 3.1272 4.7328 28 9 2.4064 3.2277 3.6277 29 1 -0.3633 0.5812 0.8476 30 1 -0.3633 0.4435 -0.9270 31 1 -0.3633 -1.0245 0.0795 32 1 1.7113 -1.7602 -1.2287 33 1 1.6429 -0.2321 -2.1387 34 1 3.8611 -1.1131 -2.0435 35 1 0.5992 -2.2292 1.0628 36 1 1.5801 -2.2331 2.5481 37 1 2.8558 -2.7507 -0.1944 38 1 1.7761 -4.9405 0.0180 39 1 1.5158 -4.7142 1.8013 40 1 3.7986 -5.5881 1.9752 41 1 4.2095 -5.0368 0.2934 42 1 3.5850 -3.2817 2.7762 43 1 4.7133 -2.9098 1.4024 44 1 2.7318 1.7353 1.1353 45 1 7.1849 3.7119 -0.0635 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932907211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:57 Heat of formation + Delta-G solvation = -229.982332 kcal Electronic energy + Delta-G solvation = -33070.065260 eV Core-core repulsion = 28286.751863 eV Total energy + Delta-G solvation = -4783.313397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.85594 -48.35693 -48.34926 -41.48618 -39.50990 -38.29220 -36.66308 -36.19826 -34.42789 -32.24197 -31.22895 -28.67241 -27.02740 -26.88811 -26.38975 -24.18253 -23.20757 -22.68443 -20.71511 -20.32551 -20.02793 -19.28037 -19.12014 -18.53254 -18.35955 -18.23332 -17.23569 -16.51126 -16.47266 -16.06678 -15.85479 -15.36435 -15.28578 -15.26699 -15.09178 -14.89208 -14.81125 -14.67517 -14.55141 -14.51305 -14.48195 -13.80087 -13.67342 -13.50103 -13.27105 -13.19249 -12.94877 -12.84346 -12.62798 -12.45856 -12.23655 -11.97201 -11.95895 -11.74752 -11.53782 -11.28512 -11.09934 -11.01868 -10.86652 -10.78989 -10.10117 -9.36127 -8.54401 -6.72197 1.29673 1.35322 1.47247 1.69578 1.97749 2.19849 2.37889 2.70642 3.05723 3.31957 3.37371 3.39145 3.65201 3.76176 3.83006 3.87060 4.02067 4.03330 4.16189 4.37126 4.44062 4.48183 4.53588 4.64050 4.69410 4.72831 4.87860 4.89399 4.93993 4.97953 4.99442 5.06806 5.11466 5.17387 5.32400 5.40646 5.57689 5.66344 5.75761 5.87937 6.10930 6.42365 6.93767 7.01157 7.13763 7.72837 8.57310 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011279 B = 0.005532 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.834526 B = 5060.175908 C = 5555.536620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.122 3.878 3 H 0.074 0.926 4 C 0.064 3.936 5 O -0.589 6.589 6 N -0.612 5.612 7 C 0.140 3.860 8 C -0.125 4.125 9 C -0.114 4.114 10 C -0.137 4.137 11 C -0.136 4.136 12 C 0.694 3.306 13 O -0.620 6.620 14 N -0.728 5.728 15 C 0.227 3.773 16 H 0.074 0.926 17 C -0.534 4.534 18 H 0.064 0.936 19 C 0.067 3.933 20 N -0.899 5.899 21 Si 0.929 3.071 22 H -0.242 1.242 23 H -0.286 1.286 24 H -0.276 1.276 25 C 0.441 3.559 26 F -0.191 7.191 27 F -0.188 7.188 28 F -0.188 7.188 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.388 0.612 35 H 0.109 0.891 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.023 0.977 44 H 0.401 0.599 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.072 -14.888 -7.325 21.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.018 3.982 3 H 0.092 0.908 4 C -0.014 4.014 5 O -0.396 6.396 6 N -0.348 5.348 7 C 0.018 3.982 8 C -0.145 4.145 9 C -0.152 4.152 10 C -0.175 4.175 11 C -0.174 4.174 12 C 0.396 3.604 13 O -0.500 6.500 14 N -0.386 5.386 15 C 0.121 3.879 16 H 0.092 0.908 17 C -0.572 4.572 18 H 0.083 0.917 19 C -0.139 4.139 20 N -0.534 5.534 21 Si 0.754 3.246 22 H -0.165 1.165 23 H -0.212 1.212 24 H -0.202 1.202 25 C 0.385 3.615 26 F -0.172 7.172 27 F -0.169 7.169 28 F -0.170 7.170 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.237 0.763 35 H 0.127 0.873 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.042 0.958 44 H 0.240 0.760 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.705 -14.902 -6.211 20.545 hybrid contribution 0.724 -0.017 -0.442 0.849 sum -11.981 -14.919 -6.653 20.258 Atomic orbital electron populations 1.22045 0.91050 1.03983 1.03828 1.21429 0.96291 0.96328 0.84104 0.90821 1.22735 0.81134 1.00631 0.96943 1.86683 1.20645 1.81418 1.50904 1.47146 1.48952 1.14845 1.23885 1.21457 0.98116 0.78449 1.00221 1.23152 0.96062 0.95447 0.99808 1.22802 0.95860 0.93584 1.02973 1.22824 0.97900 0.95485 1.01258 1.22837 0.97875 0.97409 0.99258 1.16383 0.79588 0.81967 0.82471 1.90840 1.58206 1.67012 1.33956 1.46459 1.45131 1.09754 1.37271 1.19736 0.87827 0.94725 0.85627 0.90834 1.20673 1.16354 0.92551 1.27632 0.91736 1.25443 0.94619 1.00094 0.93753 1.69953 1.21880 1.32278 1.29270 0.86010 0.77288 0.80601 0.80729 1.16519 1.21169 1.20150 1.21562 0.76980 0.75146 0.87809 1.93152 1.89461 1.55109 1.79485 1.93090 1.66780 1.78877 1.78184 1.93061 1.57934 1.73670 1.92318 0.92445 0.88809 0.90044 0.91159 0.90553 0.76320 0.87286 0.92256 0.88450 0.89333 0.89464 0.91214 0.89893 0.92065 0.95834 0.76008 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.20 71.98 0.66 -1.70 16 2 C 0.12 2.90 2.92 44.99 0.13 3.03 16 3 H 0.07 2.09 5.48 -2.39 -0.01 2.08 16 4 C 0.06 1.22 5.70 71.98 0.41 1.63 16 5 O -0.59 -15.75 12.83 -148.98 -1.91 -17.66 16 6 N -0.61 -18.67 2.31 -815.72 -1.88 -20.55 16 7 C 0.14 3.49 4.73 86.38 0.41 3.90 16 8 C -0.13 -2.96 3.52 -10.21 -0.04 -2.99 16 9 C -0.11 -1.95 7.64 31.12 0.24 -1.71 16 10 C -0.14 -2.89 8.08 31.12 0.25 -2.64 16 11 C -0.14 -4.12 6.85 31.18 0.21 -3.91 16 12 C 0.69 28.75 7.98 179.05 1.43 30.18 16 13 O -0.62 -29.79 13.29 -3.98 -0.05 -29.84 16 14 N -0.73 -31.56 4.31 -461.42 -1.99 -33.55 16 15 C 0.23 11.22 1.41 44.24 0.06 11.28 16 16 H 0.07 3.99 5.16 -2.38 -0.01 3.97 16 17 C -0.53 -28.99 8.53 25.60 0.22 -28.77 16 18 H 0.06 3.80 8.00 -2.91 -0.02 3.78 16 19 C 0.07 3.69 5.47 84.65 0.46 4.16 16 20 N -0.90 -51.51 13.96 21.45 0.30 -51.21 16 21 Si 0.93 44.93 27.41 68.60 1.88 46.81 16 22 H -0.24 -11.10 7.11 99.48 0.71 -10.40 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 24 H -0.28 -14.32 5.91 99.48 0.59 -13.74 16 25 C 0.44 20.96 2.83 71.98 0.20 21.17 16 26 F -0.19 -9.01 15.63 44.97 0.70 -8.31 16 27 F -0.19 -9.07 16.89 44.97 0.76 -8.31 16 28 F -0.19 -8.50 16.93 44.97 0.76 -7.74 16 29 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 0.97 6.35 -2.39 -0.02 0.96 16 32 H 0.07 1.05 6.17 -2.39 -0.01 1.04 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.39 6.96 9.12 -74.06 -0.68 6.29 16 35 H 0.11 1.84 6.15 -2.39 -0.01 1.82 16 36 H 0.06 1.77 7.20 -2.38 -0.02 1.75 16 37 H 0.10 2.26 5.08 -2.39 -0.01 2.25 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 1.38 8.10 -2.38 -0.02 1.36 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.06 2.13 7.66 -2.39 -0.02 2.11 16 43 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.40 16.13 6.02 -92.71 -0.56 15.57 16 45 H 0.28 14.84 8.31 -92.70 -0.77 14.07 16 Total: -1.00 -71.61 364.34 2.93 -68.69 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -0.30 Total: 28.04 kcal Atomic # 6 Polarization: 28.98 SS G_CDS: 4.66 Total: 33.63 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -3.57 Total: -105.32 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -1.96 Total: -47.50 kcal Atomic # 9 Polarization: -26.58 SS G_CDS: 2.22 Total: -24.35 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.81 kcal Total: -71.61 2.93 -68.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932907211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.295 kcal (2) G-P(sol) polarization free energy of solvation -71.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds