Wall clock time and date at job start Tue Mar 31 2020 21:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46890 * 2 1 4 4 C 1.52997 * 109.46978 * 239.99650 * 2 1 3 5 5 O 1.42902 * 109.46903 * 178.20596 * 4 2 1 6 6 N 1.46497 * 109.46800 * 119.99873 * 2 1 3 7 7 C 1.46494 * 120.00052 * 65.00220 * 6 2 1 8 8 C 1.52996 * 109.47555 * 264.82220 * 7 6 2 9 9 C 1.53785 * 113.61675 * 276.35927 * 8 7 6 10 10 C 1.53956 * 87.01769 * 220.04301 * 9 8 7 11 11 C 1.53774 * 113.61816 * 178.74805 * 8 7 6 12 12 C 1.34786 * 119.99674 * 245.00149 * 6 2 1 13 13 O 1.21590 * 119.99583 * 185.01723 * 12 6 2 14 14 N 1.34775 * 119.99996 * 5.01600 * 12 6 2 15 15 C 1.46497 * 119.99534 * 185.04530 * 14 12 6 16 16 H 1.08994 * 109.47514 * 324.99603 * 15 14 12 17 17 C 1.50699 * 109.47107 * 204.99694 * 15 14 12 18 18 H 1.08006 * 120.00025 * 0.02562 * 17 15 14 19 19 C 1.37879 * 120.00342 * 180.02562 * 17 15 14 20 20 N 1.31509 * 119.99752 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 119.99863 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47404 * 60.00126 * 21 19 17 23 23 H 1.48503 * 109.46814 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47227 * 299.99783 * 21 19 17 25 25 C 1.53001 * 109.46975 * 85.00447 * 15 14 12 26 26 F 1.39898 * 109.47723 * 59.99675 * 25 15 14 27 27 F 1.39899 * 109.46997 * 180.02562 * 25 15 14 28 28 F 1.39901 * 109.46952 * 299.99209 * 25 15 14 29 29 H 1.08992 * 109.47095 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46832 * 300.00778 * 1 2 3 31 31 H 1.09000 * 109.46896 * 59.99810 * 1 2 3 32 32 H 1.09000 * 109.46976 * 58.20617 * 4 2 1 33 33 H 1.08997 * 109.47340 * 298.20543 * 4 2 1 34 34 H 0.96703 * 113.99660 * 180.02562 * 5 4 2 35 35 H 1.08995 * 109.47408 * 24.82470 * 7 6 2 36 36 H 1.09009 * 109.47161 * 144.82327 * 7 6 2 37 37 H 1.09005 * 112.84921 * 47.54925 * 8 7 6 38 38 H 1.08992 * 113.61101 * 334.56363 * 9 8 7 39 39 H 1.09004 * 113.61232 * 105.46613 * 9 8 7 40 40 H 1.08999 * 113.53337 * 270.80934 * 10 9 8 41 41 H 1.09005 * 113.66247 * 139.93132 * 10 9 8 42 42 H 1.09007 * 113.61417 * 254.52943 * 11 8 7 43 43 H 1.09001 * 113.61370 * 25.35118 * 11 8 7 44 44 H 0.96995 * 120.00078 * 5.04554 * 14 12 6 45 45 H 0.97003 * 119.99935 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 3.4684 -0.6849 -1.2704 6 7 2.0183 -0.6906 1.1962 7 6 1.7570 -2.1210 1.3741 8 6 0.5019 -2.3078 2.2290 9 6 0.7692 -2.2281 3.7414 10 6 -0.2271 -3.3915 3.8972 11 6 0.1213 -3.7810 2.4509 12 6 2.7080 -0.0098 2.1330 13 8 3.1916 -0.5994 3.0801 14 7 2.8616 1.3244 2.0199 15 6 3.7028 2.0484 2.9761 16 1 3.6116 1.5895 3.9605 17 6 3.2572 3.4862 3.0490 18 1 2.4298 3.8265 2.4439 19 6 3.9057 4.3673 3.8882 20 7 4.9134 3.9530 4.6247 21 14 3.3527 6.1493 3.9790 22 1 1.9370 6.2063 4.4238 23 1 4.2063 6.8836 4.9473 24 1 3.4759 6.7747 2.6378 25 6 5.1617 1.9893 2.5188 26 9 5.2787 2.5785 1.2554 27 9 5.9650 2.6803 3.4323 28 9 5.5754 0.6546 2.4512 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6506 -0.2264 -2.1389 33 1 1.7032 -1.7578 -1.2332 34 1 3.8617 -1.1243 -2.0369 35 1 1.6058 -2.5867 0.4003 36 1 2.6079 -2.5867 1.8714 37 1 -0.3309 -1.6865 1.8995 38 1 1.7908 -2.4881 4.0184 39 1 0.4299 -1.2975 4.1963 40 1 -1.2595 -3.0661 4.0252 41 1 0.0786 -4.1334 4.6350 42 1 -0.7404 -4.1023 1.8657 43 1 0.9652 -4.4665 2.3732 44 1 2.4153 1.8051 1.3054 45 1 5.3699 4.5730 5.2148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932907213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:01 Heat of formation + Delta-G solvation = -187.377412 kcal Electronic energy + Delta-G solvation = -32702.209675 eV Core-core repulsion = 27920.743765 eV Total energy + Delta-G solvation = -4781.465909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.20229 -45.85119 -45.48373 -40.10342 -38.25972 -37.26475 -35.13079 -34.52968 -32.45664 -31.18658 -29.04065 -27.18083 -26.18999 -25.37750 -24.46363 -23.01042 -21.93337 -21.00527 -19.29500 -19.00433 -18.32333 -17.35885 -16.78616 -16.71457 -16.48563 -16.01906 -15.55291 -15.27526 -14.87801 -14.72777 -14.64941 -14.17722 -13.92277 -13.36042 -13.19261 -12.81230 -12.76605 -12.47995 -12.44243 -12.30160 -12.28826 -12.25183 -12.20899 -12.08518 -11.84448 -11.69929 -11.56206 -11.28739 -11.08362 -10.98785 -10.81559 -10.68260 -10.53357 -10.31328 -10.16393 -10.10399 -9.91353 -9.56029 -9.27695 -8.64559 -8.32076 -7.93641 -6.15975 -4.39318 3.13220 3.23666 3.28467 3.30647 3.90913 4.09407 4.23318 4.48534 4.71146 4.77407 4.78979 4.84067 4.91695 5.01324 5.01960 5.07792 5.22346 5.29958 5.37096 5.51694 5.59297 5.63878 5.70091 5.80065 5.85681 5.94019 5.96284 5.98379 6.02517 6.06300 6.17991 6.32442 6.35884 6.45593 6.71257 6.86068 7.06330 7.35918 7.47549 7.62700 7.69823 7.75687 8.57280 8.75468 9.24287 9.40037 10.75505 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.004352 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.800829 B = 6432.497715 C = 6899.364070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.136 3.864 3 H 0.094 0.906 4 C 0.066 3.934 5 O -0.557 6.557 6 N -0.619 5.619 7 C 0.148 3.852 8 C -0.131 4.131 9 C -0.122 4.122 10 C -0.146 4.146 11 C -0.132 4.132 12 C 0.709 3.291 13 O -0.579 6.579 14 N -0.727 5.727 15 C 0.263 3.737 16 H 0.085 0.915 17 C -0.550 4.550 18 H 0.074 0.926 19 C 0.065 3.935 20 N -0.840 5.840 21 Si 0.914 3.086 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C 0.416 3.584 26 F -0.210 7.210 27 F -0.139 7.139 28 F -0.217 7.217 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.375 0.625 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.391 0.609 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.972 -10.752 -10.407 17.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.112 0.888 4 C -0.013 4.013 5 O -0.362 6.362 6 N -0.357 5.357 7 C 0.024 3.976 8 C -0.150 4.150 9 C -0.160 4.160 10 C -0.184 4.184 11 C -0.171 4.171 12 C 0.411 3.589 13 O -0.456 6.456 14 N -0.381 5.381 15 C 0.156 3.844 16 H 0.102 0.898 17 C -0.587 4.587 18 H 0.092 0.908 19 C -0.143 4.143 20 N -0.473 5.473 21 Si 0.740 3.260 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.199 1.199 25 C 0.360 3.640 26 F -0.192 7.192 27 F -0.120 7.120 28 F -0.199 7.199 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.221 0.779 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.226 0.774 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.475 -10.778 -8.971 16.924 hybrid contribution -0.101 0.896 -1.088 1.413 sum -9.577 -9.882 -10.059 17.046 Atomic orbital electron populations 1.22203 0.94290 1.02700 1.02884 1.21054 0.93872 0.97450 0.84562 0.88802 1.22562 0.82139 0.99374 0.97248 1.86679 1.18903 1.81016 1.49556 1.46970 1.59168 1.09168 1.20357 1.21175 0.96999 0.80599 0.98803 1.23107 0.98431 0.96522 0.96953 1.22898 0.99981 0.97918 0.95164 1.22875 0.99578 0.99193 0.96716 1.22853 1.00883 0.96279 0.97038 1.15881 0.78589 0.82100 0.82318 1.90871 1.53546 1.68239 1.32981 1.45407 1.52813 1.05402 1.34491 1.19548 0.80856 0.94117 0.89840 0.89766 1.20824 1.18967 0.91725 1.27198 0.90777 1.25063 0.94187 1.00003 0.95090 1.70405 1.18396 1.35659 1.22835 0.86303 0.78653 0.82844 0.78180 1.19865 1.20910 1.19902 1.23168 0.94431 0.71693 0.74735 1.92981 1.97158 1.84744 1.44296 1.93392 1.76208 1.77823 1.64619 1.93067 1.92671 1.37801 1.96361 0.91859 0.91211 0.91564 0.92958 0.93399 0.77941 0.91438 0.90132 0.89341 0.89068 0.92050 0.90816 0.91849 0.92021 0.90212 0.77352 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.35 37.16 0.31 -1.24 16 2 C 0.14 1.71 2.86 -67.93 -0.19 1.52 16 3 H 0.09 1.33 5.60 -51.93 -0.29 1.04 16 4 C 0.07 0.69 6.30 37.16 0.23 0.92 16 5 O -0.56 -7.36 13.55 -35.23 -0.48 -7.84 16 6 N -0.62 -9.78 2.28 -171.80 -0.39 -10.17 16 7 C 0.15 2.01 4.64 -4.05 -0.02 1.99 16 8 C -0.13 -1.60 3.59 -89.81 -0.32 -1.92 16 9 C -0.12 -1.76 6.65 -25.82 -0.17 -1.94 16 10 C -0.15 -1.63 8.09 -25.83 -0.21 -1.84 16 11 C -0.13 -1.34 7.65 -25.92 -0.20 -1.54 16 12 C 0.71 14.86 7.56 -86.91 -0.66 14.20 16 13 O -0.58 -14.06 13.32 5.29 0.07 -13.99 16 14 N -0.73 -15.83 4.84 -59.81 -0.29 -16.12 16 15 C 0.26 6.80 2.23 -69.08 -0.15 6.64 16 16 H 0.08 2.44 7.51 -51.93 -0.39 2.05 16 17 C -0.55 -14.40 8.46 -34.44 -0.29 -14.69 16 18 H 0.07 1.83 7.74 -52.48 -0.41 1.42 16 19 C 0.07 1.73 5.20 -17.82 -0.09 1.64 16 20 N -0.84 -23.53 9.50 55.43 0.53 -23.00 16 21 Si 0.91 20.43 29.54 -169.99 -5.02 15.41 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 C 0.42 11.19 2.81 37.16 0.10 11.29 16 26 F -0.21 -5.48 16.94 2.25 0.04 -5.44 16 27 F -0.14 -3.99 12.91 2.25 0.03 -3.96 16 28 F -0.22 -5.87 15.88 2.25 0.04 -5.83 16 29 H 0.06 0.54 6.69 -51.93 -0.35 0.19 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.43 6.41 -51.93 -0.33 0.10 16 34 H 0.37 3.08 9.12 45.56 0.42 3.50 16 35 H 0.07 0.74 6.14 -51.93 -0.32 0.42 16 36 H 0.08 1.29 7.29 -51.92 -0.38 0.91 16 37 H 0.09 1.04 6.24 -51.93 -0.32 0.72 16 38 H 0.09 1.53 7.38 -51.93 -0.38 1.15 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 44 H 0.39 7.61 6.04 -40.82 -0.25 7.37 16 45 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 364.03 15.07 5.49 5.49 Total: -1.00 -32.69 364.03 -7.17 -39.86 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.52 Total: 10.55 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: -1.66 Total: 15.04 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.16 Total: -49.30 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.41 Total: -21.82 kcal Atomic # 9 Polarization: -15.34 SS G_CDS: 0.10 Total: -15.24 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.69 -7.17 -39.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932907213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.514 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds