Wall clock time and date at job start Tue Mar 31 2020 20:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47114 * 2 1 4 4 N 1.46501 * 109.46892 * 240.00494 * 2 1 3 5 5 C 1.34774 * 120.00291 * 84.99858 * 4 2 1 6 6 O 1.21565 * 120.00126 * 359.97438 * 5 4 2 7 7 C 1.47729 * 119.99935 * 179.97438 * 5 4 2 8 8 C 1.39654 * 120.10810 * 180.02562 * 7 5 4 9 9 C 1.37849 * 119.92475 * 180.02562 * 8 7 5 10 10 C 1.38600 * 120.14918 * 359.97438 * 9 8 7 11 11 F 1.35094 * 119.89325 * 180.02562 * 10 9 8 12 12 C 1.38840 * 120.21846 * 0.02562 * 10 9 8 13 13 F 1.35106 * 119.96473 * 179.97438 * 12 10 9 14 14 C 1.38056 * 120.07355 * 359.72158 * 12 10 9 15 15 C 1.52995 * 109.46877 * 120.00069 * 2 1 3 16 16 H 1.09001 * 109.49125 * 180.02562 * 15 2 1 17 17 C 1.53032 * 109.52870 * 300.14400 * 15 2 1 18 18 C 1.53036 * 109.54203 * 181.33727 * 17 15 2 19 19 C 1.53630 * 109.24100 * 298.51188 * 18 17 15 20 20 N 1.46929 * 108.54105 * 54.85378 * 19 18 17 21 21 C 1.36936 * 120.62839 * 126.37570 * 20 19 18 22 22 H 1.08001 * 119.99493 * 207.52679 * 21 20 19 23 23 C 1.38811 * 120.00212 * 27.52222 * 21 20 19 24 24 N 1.31616 * 119.99796 * 25.85089 * 23 21 20 25 25 Si 1.86798 * 119.99834 * 205.57383 * 23 21 20 26 26 H 1.48497 * 109.47151 * 90.00469 * 25 23 21 27 27 H 1.48500 * 109.46743 * 210.00191 * 25 23 21 28 28 H 1.48499 * 109.47212 * 329.99989 * 25 23 21 29 29 C 1.46929 * 118.73997 * 306.09298 * 20 19 18 30 30 H 1.08999 * 109.47114 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46827 * 299.99801 * 1 2 3 32 32 H 1.09002 * 109.46866 * 59.99523 * 1 2 3 33 33 H 0.97002 * 119.99308 * 264.99830 * 4 2 1 34 34 H 1.07997 * 120.03644 * 359.97438 * 8 7 5 35 35 H 1.07998 * 119.92333 * 179.97438 * 9 8 7 36 36 H 1.08005 * 120.07490 * 180.30032 * 14 12 10 37 37 H 1.09007 * 109.46104 * 301.35801 * 17 15 2 38 38 H 1.09003 * 109.46087 * 61.31347 * 17 15 2 39 39 H 1.09004 * 109.50061 * 58.58117 * 18 17 15 40 40 H 1.08995 * 109.50113 * 178.65377 * 18 17 15 41 41 H 1.09003 * 109.73907 * 295.12133 * 19 18 17 42 42 H 1.08993 * 109.66768 * 174.54799 * 19 18 17 43 43 H 0.96996 * 120.00373 * 4.05514 * 24 23 21 44 44 H 1.08992 * 109.58740 * 173.64770 * 29 20 19 45 45 H 1.09001 * 109.59013 * 293.93703 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8575 1.1612 -2.4119 7 6 2.6399 -0.7144 -3.5633 8 6 2.7747 -0.0198 -4.7673 9 6 3.2345 -0.6733 -5.8905 10 6 3.5639 -2.0181 -5.8275 11 9 4.0145 -2.6534 -6.9314 12 6 3.4323 -2.7146 -4.6337 13 9 3.7544 -4.0255 -4.5782 14 6 2.9776 -2.0678 -3.5019 15 6 2.0400 -0.7212 1.2492 16 1 3.1300 -0.7211 1.2498 17 6 1.5276 -0.0030 2.4996 18 6 2.0647 -0.7044 3.7492 19 6 1.5498 -2.1516 3.7782 20 7 1.9188 -2.8042 2.5145 21 6 2.6072 -3.9880 2.5157 22 1 3.2475 -4.2410 1.6836 23 6 2.4820 -4.8626 3.5863 24 7 1.3916 -4.8490 4.3232 25 14 3.8581 -6.0641 3.9765 26 1 4.8119 -5.4337 4.9240 27 1 3.2861 -7.2889 4.5914 28 1 4.5699 -6.4251 2.7242 29 6 1.5297 -2.1657 1.2497 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2490 -1.6317 -1.1527 34 1 2.5181 1.0280 -4.8185 35 1 3.3383 -0.1362 -6.8217 36 1 2.8798 -2.6084 -2.5720 37 1 1.8689 1.0322 2.4893 38 1 0.4378 -0.0257 2.5105 39 1 3.1545 -0.7039 3.7266 40 1 1.7190 -0.1782 4.6388 41 1 0.4653 -2.1543 3.8877 42 1 2.0048 -2.6862 4.6119 43 1 0.6514 -4.2697 4.0835 44 1 1.9714 -2.7096 0.4148 45 1 0.4437 -2.1718 1.1562 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025440288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:22 Heat of formation + Delta-G solvation = -87.830557 kcal Electronic energy + Delta-G solvation = -29475.685419 eV Core-core repulsion = 25129.305410 eV Total energy + Delta-G solvation = -4346.380009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.84620 -48.90797 -40.57357 -38.89890 -37.90440 -35.49443 -33.42942 -32.04149 -31.01743 -30.49074 -30.38071 -28.19392 -25.23196 -24.89939 -23.92370 -23.24070 -22.31842 -20.98656 -20.38901 -19.05164 -18.52509 -17.86325 -17.51778 -17.35592 -16.69881 -16.62756 -15.84486 -15.32009 -15.13522 -14.88863 -14.85650 -14.65594 -14.47717 -14.19484 -13.82213 -13.63908 -13.51800 -13.40533 -12.93748 -12.84961 -12.71195 -12.34998 -12.23235 -12.06924 -11.86822 -11.68219 -11.10195 -10.88247 -10.62634 -10.46309 -10.28728 -10.17125 -10.11231 -9.95165 -9.84988 -9.63279 -9.31680 -9.25020 -9.04783 -8.39814 -6.92545 -6.14061 -3.28290 0.09827 0.52445 2.34014 2.94550 3.26616 3.28693 3.47756 3.48760 3.65465 3.87541 4.03935 4.26554 4.49002 4.53277 4.65097 4.87176 5.07144 5.14041 5.22356 5.27046 5.30162 5.33437 5.41807 5.51586 5.54195 5.54889 5.67385 5.70700 5.83388 5.97609 6.04370 6.06703 6.15969 6.20469 6.29990 6.41010 6.45427 6.46434 6.59594 6.64915 6.76375 7.05450 7.15905 7.36459 7.94030 8.01071 8.52219 9.05687 9.78965 10.23733 11.16098 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011035 B = 0.003265 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.731013 B = 8573.893322 C =10758.557924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 H 0.086 0.914 4 N -0.712 5.712 5 C 0.560 3.440 6 O -0.535 6.535 7 C -0.113 4.113 8 C -0.042 4.042 9 C -0.133 4.133 10 C 0.089 3.911 11 F -0.124 7.124 12 C 0.066 3.934 13 F -0.122 7.122 14 C -0.093 4.093 15 C -0.114 4.114 16 H 0.074 0.926 17 C -0.101 4.101 18 C -0.137 4.137 19 C 0.149 3.851 20 N -0.598 5.598 21 C -0.354 4.354 22 H 0.055 0.945 23 C -0.022 4.022 24 N -0.914 5.914 25 Si 1.066 2.934 26 H -0.293 1.293 27 H -0.289 1.289 28 H -0.292 1.292 29 C 0.153 3.847 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.402 0.598 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.017 0.983 42 H 0.078 0.922 43 H 0.270 0.730 44 H 0.047 0.953 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.653 10.352 -16.624 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.045 3.955 3 H 0.104 0.896 4 N -0.364 5.364 5 C 0.346 3.654 6 O -0.413 6.413 7 C -0.116 4.116 8 C -0.061 4.061 9 C -0.152 4.152 10 C 0.069 3.931 11 F -0.102 7.102 12 C 0.045 3.955 13 F -0.100 7.100 14 C -0.112 4.112 15 C -0.135 4.135 16 H 0.092 0.908 17 C -0.139 4.139 18 C -0.176 4.176 19 C 0.023 3.977 20 N -0.321 5.321 21 C -0.483 4.483 22 H 0.073 0.927 23 C -0.224 4.224 24 N -0.553 5.553 25 Si 0.896 3.104 26 H -0.220 1.220 27 H -0.216 1.216 28 H -0.219 1.219 29 C 0.027 3.973 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.173 0.827 35 H 0.171 0.829 36 H 0.170 0.830 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.035 0.965 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.978 9.878 -15.608 18.577 hybrid contribution -0.169 0.234 -1.316 1.348 sum 1.809 10.113 -16.925 19.799 Atomic orbital electron populations 1.22269 0.95181 1.02771 1.02156 1.21086 0.94313 0.96834 0.83227 0.89623 1.46178 1.66119 1.14495 1.09619 1.17964 0.78022 0.86491 0.82905 1.90781 1.50473 1.15200 1.84886 1.19954 1.03153 0.93115 0.95413 1.21220 0.93907 1.01194 0.89780 1.21084 1.01411 0.91760 1.00960 1.17956 1.01092 0.91688 0.82372 1.91556 1.86297 1.81908 1.50479 1.17487 1.04624 0.79597 0.93753 1.91589 1.90357 1.31233 1.96858 1.21345 0.97484 0.94366 0.98052 1.21957 1.00956 0.98008 0.92544 0.90783 1.21427 1.00325 0.97682 0.94435 1.22133 1.00789 0.98682 0.96035 1.21059 0.96235 0.90003 0.90383 1.44093 1.65913 1.22936 0.99166 1.19969 1.22602 0.96318 1.09449 0.92671 1.25824 1.00928 0.98708 0.96948 1.70760 1.03294 1.37864 1.43430 0.83487 0.75155 0.76042 0.75670 1.22012 1.21568 1.21862 1.20951 0.96348 0.90002 0.90017 0.91680 0.91187 0.92646 0.76077 0.82748 0.82857 0.82966 0.93153 0.92097 0.92385 0.92966 0.96524 0.90349 0.91940 0.93500 0.95866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 8.79 37.16 0.33 -1.79 16 2 C 0.15 2.00 2.41 -67.93 -0.16 1.83 16 3 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 4 N -0.71 -8.81 4.95 -54.79 -0.27 -9.08 16 5 C 0.56 7.03 7.73 -12.38 -0.10 6.93 16 6 O -0.54 -8.10 16.00 5.31 0.08 -8.02 16 7 C -0.11 -1.16 5.87 -104.97 -0.62 -1.78 16 8 C -0.04 -0.36 9.59 -39.20 -0.38 -0.74 16 9 C -0.13 -1.00 10.01 -39.59 -0.40 -1.40 16 10 C 0.09 0.85 7.31 -39.23 -0.29 0.57 16 11 F -0.12 -1.28 17.17 2.25 0.04 -1.25 16 12 C 0.07 0.69 7.30 -39.43 -0.29 0.40 16 13 F -0.12 -1.47 17.18 2.25 0.04 -1.43 16 14 C -0.09 -0.92 9.51 -39.13 -0.37 -1.29 16 15 C -0.11 -1.76 2.33 -90.50 -0.21 -1.98 16 16 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 17 C -0.10 -1.54 4.77 -26.70 -0.13 -1.66 16 18 C -0.14 -2.44 6.10 -26.39 -0.16 -2.60 16 19 C 0.15 3.32 4.72 -3.48 -0.02 3.31 16 20 N -0.60 -14.04 2.85 -172.05 -0.49 -14.53 16 21 C -0.35 -9.45 9.48 -15.06 -0.14 -9.59 16 22 H 0.06 1.47 7.95 -52.49 -0.42 1.06 16 23 C -0.02 -0.59 4.66 -17.43 -0.08 -0.67 16 24 N -0.91 -26.63 12.46 55.49 0.69 -25.94 16 25 Si 1.07 24.71 29.99 -169.99 -5.10 19.61 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 29 C 0.15 2.88 5.29 -3.71 -0.02 2.86 16 30 H 0.06 0.87 6.32 -51.93 -0.33 0.54 16 31 H 0.07 0.85 6.46 -51.93 -0.34 0.51 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.40 4.64 5.00 -40.82 -0.20 4.44 16 34 H 0.15 1.19 7.65 -52.49 -0.40 0.79 16 35 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.15 1.37 6.40 -52.48 -0.34 1.04 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.91 6.50 -51.93 -0.34 0.57 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.02 0.38 7.87 -51.93 -0.41 -0.03 16 42 H 0.08 1.99 6.31 -51.93 -0.33 1.66 16 43 H 0.27 7.89 6.69 -40.82 -0.27 7.62 16 44 H 0.05 0.85 6.52 -51.93 -0.34 0.51 16 45 H 0.02 0.45 6.19 -51.93 -0.32 0.12 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -30.77 363.98 -8.30 -39.07 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.75 Total: 3.67 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -3.03 Total: -7.59 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -0.07 Total: -49.54 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.08 Total: -8.02 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.08 Total: -2.68 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.10 Total: 19.61 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.77 -8.30 -39.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025440288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.762 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds