Wall clock time and date at job start Tue Mar 31 2020 20:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47114 * 2 1 4 4 N 1.46501 * 109.46892 * 240.00494 * 2 1 3 5 5 C 1.34774 * 120.00291 * 84.99858 * 4 2 1 6 6 O 1.21565 * 120.00126 * 359.97438 * 5 4 2 7 7 C 1.47729 * 119.99935 * 179.97438 * 5 4 2 8 8 C 1.39654 * 120.10810 * 180.02562 * 7 5 4 9 9 C 1.37849 * 119.92475 * 180.02562 * 8 7 5 10 10 C 1.38600 * 120.14918 * 359.97438 * 9 8 7 11 11 F 1.35094 * 119.89325 * 180.02562 * 10 9 8 12 12 C 1.38840 * 120.21846 * 0.02562 * 10 9 8 13 13 F 1.35106 * 119.96473 * 179.97438 * 12 10 9 14 14 C 1.38056 * 120.07355 * 359.72158 * 12 10 9 15 15 C 1.52995 * 109.46877 * 120.00069 * 2 1 3 16 16 H 1.09001 * 109.49125 * 180.02562 * 15 2 1 17 17 C 1.53032 * 109.52870 * 300.14400 * 15 2 1 18 18 C 1.53036 * 109.54203 * 181.33727 * 17 15 2 19 19 C 1.53630 * 109.24100 * 298.51188 * 18 17 15 20 20 N 1.46929 * 108.54105 * 54.85378 * 19 18 17 21 21 C 1.36936 * 120.62839 * 126.37570 * 20 19 18 22 22 H 1.08001 * 119.99493 * 207.52679 * 21 20 19 23 23 C 1.38811 * 120.00212 * 27.52222 * 21 20 19 24 24 N 1.31616 * 119.99796 * 25.85089 * 23 21 20 25 25 Si 1.86798 * 119.99834 * 205.57383 * 23 21 20 26 26 H 1.48497 * 109.47151 * 90.00469 * 25 23 21 27 27 H 1.48500 * 109.46743 * 210.00191 * 25 23 21 28 28 H 1.48499 * 109.47212 * 329.99989 * 25 23 21 29 29 C 1.46929 * 118.73997 * 306.09298 * 20 19 18 30 30 H 1.08999 * 109.47114 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46827 * 299.99801 * 1 2 3 32 32 H 1.09002 * 109.46866 * 59.99523 * 1 2 3 33 33 H 0.97002 * 119.99308 * 264.99830 * 4 2 1 34 34 H 1.07997 * 120.03644 * 359.97438 * 8 7 5 35 35 H 1.07998 * 119.92333 * 179.97438 * 9 8 7 36 36 H 1.08005 * 120.07490 * 180.30032 * 14 12 10 37 37 H 1.09007 * 109.46104 * 301.35801 * 17 15 2 38 38 H 1.09003 * 109.46087 * 61.31347 * 17 15 2 39 39 H 1.09004 * 109.50061 * 58.58117 * 18 17 15 40 40 H 1.08995 * 109.50113 * 178.65377 * 18 17 15 41 41 H 1.09003 * 109.73907 * 295.12133 * 19 18 17 42 42 H 1.08993 * 109.66768 * 174.54799 * 19 18 17 43 43 H 0.96996 * 120.00373 * 4.05514 * 24 23 21 44 44 H 1.08992 * 109.58740 * 173.64770 * 29 20 19 45 45 H 1.09001 * 109.59013 * 293.93703 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8575 1.1612 -2.4119 7 6 2.6399 -0.7144 -3.5633 8 6 2.7747 -0.0198 -4.7673 9 6 3.2345 -0.6733 -5.8905 10 6 3.5639 -2.0181 -5.8275 11 9 4.0145 -2.6534 -6.9314 12 6 3.4323 -2.7146 -4.6337 13 9 3.7544 -4.0255 -4.5782 14 6 2.9776 -2.0678 -3.5019 15 6 2.0400 -0.7212 1.2492 16 1 3.1300 -0.7211 1.2498 17 6 1.5276 -0.0030 2.4996 18 6 2.0647 -0.7044 3.7492 19 6 1.5498 -2.1516 3.7782 20 7 1.9188 -2.8042 2.5145 21 6 2.6072 -3.9880 2.5157 22 1 3.2475 -4.2410 1.6836 23 6 2.4820 -4.8626 3.5863 24 7 1.3916 -4.8490 4.3232 25 14 3.8581 -6.0641 3.9765 26 1 4.8119 -5.4337 4.9240 27 1 3.2861 -7.2889 4.5914 28 1 4.5699 -6.4251 2.7242 29 6 1.5297 -2.1657 1.2497 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2490 -1.6317 -1.1527 34 1 2.5181 1.0280 -4.8185 35 1 3.3383 -0.1362 -6.8217 36 1 2.8798 -2.6084 -2.5720 37 1 1.8689 1.0322 2.4893 38 1 0.4378 -0.0257 2.5105 39 1 3.1545 -0.7039 3.7266 40 1 1.7190 -0.1782 4.6388 41 1 0.4653 -2.1543 3.8877 42 1 2.0048 -2.6862 4.6119 43 1 0.6514 -4.2697 4.0835 44 1 1.9714 -2.7096 0.4148 45 1 0.4437 -2.1718 1.1562 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025440288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:20 Heat of formation + Delta-G solvation = -104.628172 kcal Electronic energy + Delta-G solvation = -29476.413819 eV Core-core repulsion = 25129.305410 eV Total energy + Delta-G solvation = -4347.108408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -50.65803 -49.73490 -41.54900 -40.03744 -39.02375 -36.90883 -34.92694 -33.15868 -32.23218 -31.82892 -31.43490 -29.48760 -27.06269 -25.94642 -24.89652 -24.21023 -23.86770 -22.28571 -21.51689 -20.34099 -19.57132 -19.30263 -18.61994 -18.32089 -17.54091 -17.50451 -16.90528 -16.34407 -16.26085 -16.14529 -15.97158 -15.67093 -15.63526 -15.45255 -15.40559 -15.03105 -14.92273 -14.38253 -14.25182 -13.94208 -13.72168 -13.64484 -13.55133 -13.14016 -12.91414 -12.75174 -12.62684 -12.58315 -12.11126 -11.90919 -11.88561 -11.74428 -11.61076 -11.42805 -11.13201 -11.05143 -10.42680 -10.36977 -10.20782 -9.92180 -8.88537 -8.24699 -5.37321 -0.67926 -0.19161 1.48920 1.58638 1.64927 1.82015 1.98287 2.43217 2.54463 2.65198 3.09379 3.22081 3.31950 3.42209 3.51726 3.77782 3.84835 3.88258 3.92536 3.97990 4.24814 4.32403 4.37168 4.40941 4.50168 4.54484 4.58504 4.67685 4.74149 4.76563 4.84207 4.89668 4.92842 5.00208 5.06069 5.11406 5.17696 5.24802 5.29813 5.38275 5.43071 5.49718 5.58336 5.85699 6.36989 6.41276 7.02096 7.08249 7.79799 8.25056 9.01952 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011035 B = 0.003265 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.731013 B = 8573.893322 C =10758.557924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.159 3.841 3 H 0.089 0.911 4 N -0.713 5.713 5 C 0.563 3.437 6 O -0.561 6.561 7 C -0.123 4.123 8 C -0.034 4.034 9 C -0.115 4.115 10 C 0.086 3.914 11 F -0.129 7.129 12 C 0.047 3.953 13 F -0.136 7.136 14 C -0.091 4.091 15 C -0.099 4.099 16 H 0.064 0.936 17 C -0.097 4.097 18 C -0.127 4.127 19 C 0.152 3.848 20 N -0.616 5.616 21 C -0.354 4.354 22 H 0.052 0.948 23 C -0.074 4.074 24 N -0.943 5.943 25 Si 1.112 2.888 26 H -0.285 1.285 27 H -0.296 1.296 28 H -0.273 1.273 29 C 0.152 3.848 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.405 0.595 34 H 0.168 0.832 35 H 0.188 0.812 36 H 0.155 0.845 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.005 0.995 42 H 0.040 0.960 43 H 0.255 0.745 44 H 0.048 0.952 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.257 12.160 -18.258 22.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.054 3.946 3 H 0.107 0.893 4 N -0.364 5.364 5 C 0.351 3.649 6 O -0.441 6.441 7 C -0.126 4.126 8 C -0.053 4.053 9 C -0.133 4.133 10 C 0.066 3.934 11 F -0.108 7.108 12 C 0.027 3.973 13 F -0.115 7.115 14 C -0.110 4.110 15 C -0.119 4.119 16 H 0.083 0.917 17 C -0.135 4.135 18 C -0.166 4.166 19 C 0.027 3.973 20 N -0.341 5.341 21 C -0.484 4.484 22 H 0.070 0.930 23 C -0.270 4.270 24 N -0.585 5.585 25 Si 0.938 3.062 26 H -0.212 1.212 27 H -0.223 1.223 28 H -0.198 1.198 29 C 0.026 3.974 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.243 0.757 34 H 0.185 0.815 35 H 0.205 0.795 36 H 0.173 0.827 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.023 0.977 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.588 11.706 -17.272 21.025 hybrid contribution -0.381 -0.296 -0.882 1.005 sum 2.207 11.410 -18.154 21.555 Atomic orbital electron populations 1.22219 0.94551 1.02352 1.02712 1.20926 0.94637 0.96536 0.82490 0.89292 1.46164 1.66037 1.14651 1.09546 1.18191 0.77305 0.86150 0.83246 1.90766 1.51768 1.16256 1.85316 1.19830 1.04329 0.93174 0.95257 1.21418 0.92916 1.01697 0.89242 1.21367 0.99383 0.90699 1.01863 1.18159 1.01042 0.92395 0.81806 1.91545 1.86398 1.82179 1.50647 1.17673 1.05822 0.79244 0.94557 1.91549 1.90673 1.32269 1.96978 1.21312 0.97315 0.94318 0.98081 1.21736 1.00213 0.95859 0.94106 0.91722 1.21432 1.00727 0.98780 0.92587 1.22000 1.00178 0.95847 0.98579 1.20942 0.95278 0.92333 0.88794 1.44334 1.66115 1.22581 1.01052 1.20222 1.22031 0.97150 1.09017 0.93032 1.27039 1.02062 1.00551 0.97380 1.70874 1.03947 1.39057 1.44641 0.82869 0.73054 0.74026 0.76286 1.21220 1.22259 1.19846 1.21094 0.96418 0.91812 0.88028 0.92525 0.90219 0.92521 0.75699 0.81463 0.79500 0.82735 0.90152 0.91372 0.93178 0.90816 0.97661 0.94186 0.93465 0.93329 0.95817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 8.79 71.98 0.63 -3.16 16 2 C 0.16 3.93 2.41 44.99 0.11 4.04 16 3 H 0.09 2.24 7.58 -2.39 -0.02 2.22 16 4 N -0.71 -16.64 4.95 -445.52 -2.20 -18.84 16 5 C 0.56 13.25 7.73 86.75 0.67 13.92 16 6 O -0.56 -15.93 16.00 -3.92 -0.06 -16.00 16 7 C -0.12 -2.32 5.87 -20.09 -0.12 -2.43 16 8 C -0.03 -0.49 9.59 22.52 0.22 -0.27 16 9 C -0.11 -1.38 10.01 22.26 0.22 -1.16 16 10 C 0.09 1.50 7.31 22.50 0.16 1.66 16 11 F -0.13 -2.48 17.17 44.97 0.77 -1.71 16 12 C 0.05 0.96 7.30 22.37 0.16 1.12 16 13 F -0.14 -3.28 17.18 44.97 0.77 -2.51 16 14 C -0.09 -1.71 9.51 22.56 0.21 -1.50 16 15 C -0.10 -2.90 2.33 -10.72 -0.02 -2.92 16 16 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 17 C -0.10 -2.74 4.77 30.62 0.15 -2.59 16 18 C -0.13 -4.37 6.10 30.82 0.19 -4.18 16 19 C 0.15 6.91 4.72 86.51 0.41 7.31 16 20 N -0.62 -29.29 2.85 -698.24 -1.99 -31.27 16 21 C -0.35 -19.14 9.48 84.03 0.80 -18.35 16 22 H 0.05 2.77 7.95 -2.91 -0.02 2.75 16 23 C -0.07 -4.10 4.66 84.86 0.40 -3.71 16 24 N -0.94 -56.66 12.46 21.65 0.27 -56.39 16 25 Si 1.11 50.42 29.99 68.60 2.06 52.48 16 26 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 27 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 29 C 0.15 5.62 5.29 86.36 0.46 6.08 16 30 H 0.06 1.43 6.32 -2.39 -0.02 1.42 16 31 H 0.08 1.73 6.46 -2.39 -0.02 1.71 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.41 8.99 5.00 -92.71 -0.46 8.53 16 34 H 0.17 2.06 7.65 -2.91 -0.02 2.03 16 35 H 0.19 0.99 8.06 -2.91 -0.02 0.96 16 36 H 0.16 2.73 6.40 -2.91 -0.02 2.72 16 37 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.07 1.85 6.50 -2.39 -0.02 1.84 16 39 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.01 0.25 7.87 -2.39 -0.02 0.23 16 42 H 0.04 2.10 6.31 -2.39 -0.02 2.08 16 43 H 0.26 15.58 6.69 -92.71 -0.62 14.96 16 44 H 0.05 1.75 6.52 -2.39 -0.02 1.73 16 45 H 0.02 0.90 6.19 -2.39 -0.01 0.88 16 Total: -1.00 -67.55 363.98 4.98 -62.57 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.72 Total: 17.81 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 4.64 Total: -6.14 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -3.92 Total: -106.51 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.06 Total: -16.00 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 1.54 Total: -4.22 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.06 Total: 52.48 kcal Total: -67.55 4.98 -62.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025440288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.062 kcal (2) G-P(sol) polarization free energy of solvation -67.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds