Wall clock time and date at job start Tue Mar 31 2020 20:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47367 * 2 1 4 4 N 1.46503 * 109.46834 * 120.00083 * 2 1 3 5 5 C 1.34773 * 120.00227 * 274.99611 * 4 2 1 6 6 O 1.21570 * 119.99934 * 0.02562 * 5 4 2 7 7 C 1.47727 * 120.00416 * 180.02562 * 5 4 2 8 8 C 1.39649 * 120.10593 * 359.72441 * 7 5 4 9 9 C 1.37858 * 119.92275 * 179.72433 * 8 7 5 10 10 C 1.38604 * 120.14393 * 0.57668 * 9 8 7 11 11 F 1.35102 * 119.88623 * 179.71936 * 10 9 8 12 12 C 1.38836 * 120.22108 * 359.69767 * 10 9 8 13 13 F 1.35105 * 119.96034 * 180.02562 * 12 10 9 14 14 C 1.38055 * 120.07632 * 0.02562 * 12 10 9 15 15 C 1.53007 * 109.47114 * 239.99829 * 2 1 3 16 16 H 1.08993 * 109.49376 * 184.93959 * 15 2 1 17 17 C 1.53034 * 109.49572 * 64.84067 * 15 2 1 18 18 C 1.53038 * 109.53854 * 178.68459 * 17 15 2 19 19 C 1.53194 * 109.31332 * 61.36275 * 18 17 15 20 20 N 1.46925 * 108.77532 * 305.36663 * 19 18 17 21 21 C 1.36937 * 120.63197 * 233.58691 * 20 19 18 22 22 H 1.07999 * 120.00348 * 152.30639 * 21 20 19 23 23 C 1.38819 * 119.99903 * 332.30989 * 21 20 19 24 24 N 1.31620 * 119.99642 * 342.59555 * 23 21 20 25 25 Si 1.86797 * 120.00051 * 162.59977 * 23 21 20 26 26 H 1.48502 * 109.47161 * 94.34865 * 25 23 21 27 27 H 1.48496 * 109.46986 * 214.34931 * 25 23 21 28 28 H 1.48501 * 109.47026 * 334.34952 * 25 23 21 29 29 C 1.46929 * 118.73677 * 53.60848 * 20 19 18 30 30 H 1.08997 * 109.46790 * 299.99855 * 1 2 3 31 31 H 1.09000 * 109.46864 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47166 * 60.00115 * 1 2 3 33 33 H 0.97006 * 119.99742 * 95.00627 * 4 2 1 34 34 H 1.08002 * 120.04246 * 0.02562 * 8 7 5 35 35 H 1.07997 * 119.92470 * 180.29581 * 9 8 7 36 36 H 1.07996 * 120.07346 * 179.97438 * 14 12 10 37 37 H 1.09004 * 109.46299 * 298.70172 * 17 15 2 38 38 H 1.09001 * 109.46376 * 58.66052 * 17 15 2 39 39 H 1.08999 * 109.49775 * 301.41265 * 18 17 15 40 40 H 1.08997 * 109.52963 * 181.33211 * 18 17 15 41 41 H 1.09004 * 109.58836 * 185.57873 * 19 18 17 42 42 H 1.08995 * 109.70240 * 65.22479 * 19 18 17 43 43 H 0.97001 * 119.99864 * 179.97438 * 24 23 21 44 44 H 1.09004 * 109.58133 * 186.60538 * 29 20 19 45 45 H 1.09002 * 109.58647 * 66.17975 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0184 2.3572 6 8 1.8576 1.1611 2.4119 7 6 2.6400 -0.7146 3.5632 8 6 2.9677 -2.0708 3.5044 9 6 3.4327 -2.7154 4.6308 10 6 3.5643 -2.0233 5.8244 11 9 4.0152 -2.6616 6.9265 12 6 3.2348 -0.6763 5.8911 13 9 3.3657 -0.0066 7.0572 14 6 2.7737 -0.0203 4.7673 15 6 2.0401 -0.7213 -1.2493 16 1 3.1264 -0.7988 -1.2065 17 6 1.6321 0.0665 -2.4962 18 6 2.1698 -0.6367 -3.7446 19 6 1.5608 -2.0393 -3.8380 20 7 1.8248 -2.7541 -2.5818 21 6 2.4275 -3.9837 -2.5921 22 1 3.0120 -4.3058 -1.7430 23 6 2.2872 -4.8162 -3.6941 24 7 1.3257 -4.5975 -4.5658 25 14 3.4630 -6.2468 -3.9395 26 1 2.8706 -7.4794 -3.3606 27 1 3.7022 -6.4473 -5.3913 28 1 4.7508 -5.9510 -3.2618 29 6 1.4295 -2.1248 -1.3143 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6319 1.1526 34 1 2.8616 -2.6129 2.5763 35 1 3.6907 -3.7631 4.5841 36 1 2.5170 1.0274 4.8194 37 1 0.5448 0.1223 -2.5509 38 1 2.0448 1.0738 -2.4406 39 1 3.2550 -0.7150 -3.6790 40 1 1.8994 -0.0630 -4.6310 41 1 2.0145 -2.5802 -4.6685 42 1 0.4850 -1.9630 -3.9958 43 1 1.2278 -5.1790 -5.3360 44 1 1.7967 -2.7221 -0.4797 45 1 0.3430 -2.0533 -1.2651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025440289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:26 Heat of formation + Delta-G solvation = -85.657373 kcal Electronic energy + Delta-G solvation = -29243.034890 eV Core-core repulsion = 24896.749118 eV Total energy + Delta-G solvation = -4346.285773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.85768 -48.92633 -40.53764 -38.82442 -37.82202 -35.32958 -33.21720 -31.79112 -31.43183 -30.52189 -30.22980 -28.13028 -25.37128 -24.96184 -23.58706 -23.43489 -22.25061 -21.02747 -20.31679 -19.03533 -18.44761 -17.92015 -17.47250 -16.84660 -16.70603 -16.35933 -15.90250 -15.33730 -15.11107 -14.97157 -14.86491 -14.52484 -14.45746 -14.35006 -13.90297 -13.54231 -13.37197 -13.18418 -13.02877 -12.72425 -12.43637 -12.36766 -12.25849 -11.86650 -11.76609 -11.68620 -11.06321 -10.97066 -10.64045 -10.54105 -10.27456 -10.23811 -10.07583 -9.92859 -9.68093 -9.58461 -9.45807 -9.25823 -9.01157 -8.52179 -6.73314 -5.85662 -3.28099 0.11275 0.54146 2.36151 2.92812 3.28984 3.31458 3.32722 3.39754 3.40949 3.91447 4.09572 4.32068 4.42196 4.44023 4.62307 4.93892 5.14960 5.21062 5.31297 5.33231 5.35562 5.37915 5.48839 5.52755 5.62496 5.64612 5.65252 5.79386 5.93875 6.06472 6.15592 6.18873 6.21717 6.26962 6.40701 6.50283 6.54479 6.64679 6.71010 6.81055 6.90837 7.34465 7.40755 7.61737 7.71813 8.05246 8.37523 9.13887 9.77743 10.34197 11.22489 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.002871 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.580167 B = 9750.464405 C =11640.152843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 H 0.085 0.915 4 N -0.711 5.711 5 C 0.559 3.441 6 O -0.536 6.536 7 C -0.113 4.113 8 C -0.065 4.065 9 C -0.129 4.129 10 C 0.090 3.910 11 F -0.124 7.124 12 C 0.060 3.940 13 F -0.125 7.125 14 C -0.069 4.069 15 C -0.114 4.114 16 H 0.073 0.927 17 C -0.100 4.100 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.256 4.256 22 H 0.064 0.936 23 C 0.004 3.996 24 N -0.900 5.900 25 Si 0.900 3.100 26 H -0.288 1.288 27 H -0.289 1.289 28 H -0.279 1.279 29 C 0.151 3.849 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.402 0.598 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.018 0.982 43 H 0.254 0.746 44 H 0.045 0.955 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.189 7.319 15.316 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.045 3.955 3 H 0.103 0.897 4 N -0.362 5.362 5 C 0.345 3.655 6 O -0.414 6.414 7 C -0.116 4.116 8 C -0.084 4.084 9 C -0.148 4.148 10 C 0.069 3.931 11 F -0.103 7.103 12 C 0.040 3.960 13 F -0.104 7.104 14 C -0.088 4.088 15 C -0.135 4.135 16 H 0.091 0.909 17 C -0.138 4.138 18 C -0.181 4.181 19 C 0.043 3.957 20 N -0.313 5.313 21 C -0.385 4.385 22 H 0.082 0.918 23 C -0.195 4.195 24 N -0.544 5.544 25 Si 0.730 3.270 26 H -0.215 1.215 27 H -0.215 1.215 28 H -0.204 1.204 29 C 0.024 3.976 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.239 0.761 34 H 0.166 0.834 35 H 0.173 0.827 36 H 0.177 0.823 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.957 8.042 15.250 17.352 hybrid contribution 0.819 -1.302 0.239 1.557 sum 2.776 6.740 15.489 17.119 Atomic orbital electron populations 1.22267 0.95161 1.02872 1.02076 1.21114 0.94350 0.96830 0.83193 0.89731 1.46125 1.66130 1.14420 1.09542 1.17959 0.78087 0.86506 0.82948 1.90788 1.50386 1.15330 1.84893 1.19927 1.03225 0.94144 0.94307 1.21371 0.94949 0.93138 0.98912 1.21080 1.01516 1.01796 0.90407 1.17951 1.00948 0.89487 0.84701 1.91558 1.86288 1.81382 1.51044 1.17497 1.05863 0.89217 0.83459 1.91558 1.93801 1.79835 1.45185 1.21159 0.96254 1.01895 0.89520 1.21975 1.00979 0.98079 0.92439 0.90867 1.21416 1.00563 0.97228 0.94629 1.22174 1.00613 0.99561 0.95798 1.20795 0.96644 0.88031 0.90193 1.44018 1.69779 1.17614 0.99893 1.19134 1.23680 0.92217 1.03480 0.91806 1.25024 0.97371 0.97645 0.99453 1.70038 1.30144 1.39649 1.14592 0.86327 0.81009 0.82420 0.77273 1.21456 1.21545 1.20433 1.20997 0.96252 0.90277 0.90047 0.92798 0.91476 0.91220 0.76109 0.83370 0.82699 0.82281 0.92183 0.93478 0.92788 0.93184 0.89588 0.96413 0.93600 0.93606 0.95571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 8.76 37.16 0.33 -1.79 16 2 C 0.15 1.96 2.35 -67.92 -0.16 1.80 16 3 H 0.08 1.18 7.58 -51.93 -0.39 0.79 16 4 N -0.71 -8.35 4.96 -54.78 -0.27 -8.62 16 5 C 0.56 6.95 7.73 -12.38 -0.10 6.85 16 6 O -0.54 -8.30 16.01 5.30 0.08 -8.22 16 7 C -0.11 -1.14 5.87 -104.97 -0.62 -1.75 16 8 C -0.06 -0.52 9.53 -39.19 -0.37 -0.90 16 9 C -0.13 -0.99 10.01 -39.59 -0.40 -1.39 16 10 C 0.09 0.85 7.31 -39.22 -0.29 0.56 16 11 F -0.12 -1.28 17.17 2.25 0.04 -1.24 16 12 C 0.06 0.60 7.30 -39.43 -0.29 0.31 16 13 F -0.13 -1.37 17.18 2.25 0.04 -1.33 16 14 C -0.07 -0.69 9.57 -39.13 -0.37 -1.06 16 15 C -0.11 -1.72 2.27 -90.50 -0.21 -1.93 16 16 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 17 C -0.10 -1.54 4.89 -26.69 -0.13 -1.67 16 18 C -0.14 -2.54 6.08 -26.61 -0.16 -2.71 16 19 C 0.17 3.80 5.31 -3.71 -0.02 3.78 16 20 N -0.59 -13.63 2.99 -172.31 -0.52 -14.15 16 21 C -0.26 -6.55 9.59 -15.06 -0.14 -6.70 16 22 H 0.06 1.58 7.89 -52.49 -0.41 1.17 16 23 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 24 N -0.90 -25.10 11.19 55.49 0.62 -24.48 16 25 Si 0.90 20.70 29.59 -169.99 -5.03 15.67 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 C 0.15 2.74 5.26 -3.71 -0.02 2.72 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.88 6.23 -51.93 -0.32 0.56 16 32 H 0.07 0.86 6.59 -51.93 -0.34 0.52 16 33 H 0.40 4.14 5.30 -40.82 -0.22 3.92 16 34 H 0.15 0.94 6.40 -52.49 -0.34 0.61 16 35 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.16 1.56 7.65 -52.49 -0.40 1.16 16 37 H 0.06 0.91 6.63 -51.93 -0.34 0.57 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 2.20 6.04 -51.93 -0.31 1.89 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.05 0.78 6.74 -51.93 -0.35 0.43 16 45 H 0.03 0.49 6.06 -51.93 -0.31 0.18 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -29.82 365.48 -8.40 -38.23 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.84 Total: 2.50 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -3.03 Total: -3.85 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.17 Total: -47.26 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.08 Total: -8.22 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.08 Total: -2.57 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.82 -8.40 -38.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025440289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.431 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds