Wall clock time and date at job start Tue Mar 31 2020 20:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47367 * 2 1 4 4 N 1.46503 * 109.46834 * 120.00083 * 2 1 3 5 5 C 1.34773 * 120.00227 * 274.99611 * 4 2 1 6 6 O 1.21570 * 119.99934 * 0.02562 * 5 4 2 7 7 C 1.47727 * 120.00416 * 180.02562 * 5 4 2 8 8 C 1.39649 * 120.10593 * 359.72441 * 7 5 4 9 9 C 1.37858 * 119.92275 * 179.72433 * 8 7 5 10 10 C 1.38604 * 120.14393 * 0.57668 * 9 8 7 11 11 F 1.35102 * 119.88623 * 179.71936 * 10 9 8 12 12 C 1.38836 * 120.22108 * 359.69767 * 10 9 8 13 13 F 1.35105 * 119.96034 * 180.02562 * 12 10 9 14 14 C 1.38055 * 120.07632 * 0.02562 * 12 10 9 15 15 C 1.53007 * 109.47114 * 239.99829 * 2 1 3 16 16 H 1.08993 * 109.49376 * 184.93959 * 15 2 1 17 17 C 1.53034 * 109.49572 * 64.84067 * 15 2 1 18 18 C 1.53038 * 109.53854 * 178.68459 * 17 15 2 19 19 C 1.53194 * 109.31332 * 61.36275 * 18 17 15 20 20 N 1.46925 * 108.77532 * 305.36663 * 19 18 17 21 21 C 1.36937 * 120.63197 * 233.58691 * 20 19 18 22 22 H 1.07999 * 120.00348 * 152.30639 * 21 20 19 23 23 C 1.38819 * 119.99903 * 332.30989 * 21 20 19 24 24 N 1.31620 * 119.99642 * 342.59555 * 23 21 20 25 25 Si 1.86797 * 120.00051 * 162.59977 * 23 21 20 26 26 H 1.48502 * 109.47161 * 94.34865 * 25 23 21 27 27 H 1.48496 * 109.46986 * 214.34931 * 25 23 21 28 28 H 1.48501 * 109.47026 * 334.34952 * 25 23 21 29 29 C 1.46929 * 118.73677 * 53.60848 * 20 19 18 30 30 H 1.08997 * 109.46790 * 299.99855 * 1 2 3 31 31 H 1.09000 * 109.46864 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47166 * 60.00115 * 1 2 3 33 33 H 0.97006 * 119.99742 * 95.00627 * 4 2 1 34 34 H 1.08002 * 120.04246 * 0.02562 * 8 7 5 35 35 H 1.07997 * 119.92470 * 180.29581 * 9 8 7 36 36 H 1.07996 * 120.07346 * 179.97438 * 14 12 10 37 37 H 1.09004 * 109.46299 * 298.70172 * 17 15 2 38 38 H 1.09001 * 109.46376 * 58.66052 * 17 15 2 39 39 H 1.08999 * 109.49775 * 301.41265 * 18 17 15 40 40 H 1.08997 * 109.52963 * 181.33211 * 18 17 15 41 41 H 1.09004 * 109.58836 * 185.57873 * 19 18 17 42 42 H 1.08995 * 109.70240 * 65.22479 * 19 18 17 43 43 H 0.97001 * 119.99864 * 179.97438 * 24 23 21 44 44 H 1.09004 * 109.58133 * 186.60538 * 29 20 19 45 45 H 1.09002 * 109.58647 * 66.17975 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0184 2.3572 6 8 1.8576 1.1611 2.4119 7 6 2.6400 -0.7146 3.5632 8 6 2.9677 -2.0708 3.5044 9 6 3.4327 -2.7154 4.6308 10 6 3.5643 -2.0233 5.8244 11 9 4.0152 -2.6616 6.9265 12 6 3.2348 -0.6763 5.8911 13 9 3.3657 -0.0066 7.0572 14 6 2.7737 -0.0203 4.7673 15 6 2.0401 -0.7213 -1.2493 16 1 3.1264 -0.7988 -1.2065 17 6 1.6321 0.0665 -2.4962 18 6 2.1698 -0.6367 -3.7446 19 6 1.5608 -2.0393 -3.8380 20 7 1.8248 -2.7541 -2.5818 21 6 2.4275 -3.9837 -2.5921 22 1 3.0120 -4.3058 -1.7430 23 6 2.2872 -4.8162 -3.6941 24 7 1.3257 -4.5975 -4.5658 25 14 3.4630 -6.2468 -3.9395 26 1 2.8706 -7.4794 -3.3606 27 1 3.7022 -6.4473 -5.3913 28 1 4.7508 -5.9510 -3.2618 29 6 1.4295 -2.1248 -1.3143 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6319 1.1526 34 1 2.8616 -2.6129 2.5763 35 1 3.6907 -3.7631 4.5841 36 1 2.5170 1.0274 4.8194 37 1 0.5448 0.1223 -2.5509 38 1 2.0448 1.0738 -2.4406 39 1 3.2550 -0.7150 -3.6790 40 1 1.8994 -0.0630 -4.6310 41 1 2.0145 -2.5802 -4.6685 42 1 0.4850 -1.9630 -3.9958 43 1 1.2278 -5.1790 -5.3360 44 1 1.7967 -2.7221 -0.4797 45 1 0.3430 -2.0533 -1.2651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025440289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:25 Heat of formation + Delta-G solvation = -101.620153 kcal Electronic energy + Delta-G solvation = -29243.727089 eV Core-core repulsion = 24896.749118 eV Total energy + Delta-G solvation = -4346.977971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.63665 -49.71306 -41.49003 -39.90291 -38.94397 -36.68992 -34.72579 -32.97656 -32.24240 -32.16178 -31.21505 -29.38897 -27.17563 -25.93416 -24.62907 -24.23671 -23.82022 -22.29660 -21.43022 -20.25105 -19.45864 -18.77281 -18.53995 -18.23508 -17.48128 -17.33629 -16.94064 -16.74263 -16.18422 -16.10812 -15.77055 -15.69530 -15.62344 -15.27542 -15.15724 -15.00139 -14.66937 -14.17716 -14.04171 -13.93813 -13.82207 -13.67202 -13.27828 -13.10682 -13.00357 -12.74088 -12.65071 -12.47452 -12.25367 -12.00219 -11.92541 -11.65894 -11.46942 -11.30305 -11.06854 -10.98030 -10.47097 -10.30986 -10.16873 -9.89001 -8.60659 -7.82095 -5.26083 -0.65009 -0.15466 1.49317 1.52507 1.52782 1.60722 1.99225 2.46722 2.55126 2.59837 3.17043 3.33376 3.39703 3.49436 3.63354 3.77768 3.90498 3.96629 4.03595 4.09212 4.39101 4.42057 4.49299 4.54272 4.59213 4.69376 4.73427 4.74942 4.83371 4.89830 4.93772 4.94514 5.02387 5.08900 5.18673 5.24370 5.34310 5.39573 5.46780 5.52128 5.54563 5.63410 5.73006 5.84191 6.43629 6.47035 7.10372 7.20222 7.92861 8.44262 9.24093 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.002871 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.580167 B = 9750.464405 C =11640.152843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.159 3.841 3 H 0.083 0.917 4 N -0.705 5.705 5 C 0.562 3.438 6 O -0.570 6.570 7 C -0.121 4.121 8 C -0.053 4.053 9 C -0.117 4.117 10 C 0.086 3.914 11 F -0.130 7.130 12 C 0.048 3.952 13 F -0.135 7.135 14 C -0.071 4.071 15 C -0.098 4.098 16 H 0.069 0.931 17 C -0.098 4.098 18 C -0.131 4.131 19 C 0.173 3.827 20 N -0.609 5.609 21 C -0.257 4.257 22 H 0.074 0.926 23 C -0.052 4.052 24 N -0.936 5.936 25 Si 0.961 3.039 26 H -0.287 1.287 27 H -0.299 1.299 28 H -0.267 1.267 29 C 0.149 3.851 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.411 0.589 34 H 0.170 0.830 35 H 0.184 0.816 36 H 0.155 0.845 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.048 0.952 42 H -0.005 1.005 43 H 0.247 0.753 44 H 0.059 0.941 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 7.180 16.421 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.054 3.946 3 H 0.101 0.899 4 N -0.356 5.356 5 C 0.350 3.650 6 O -0.450 6.450 7 C -0.125 4.125 8 C -0.072 4.072 9 C -0.135 4.135 10 C 0.066 3.934 11 F -0.108 7.108 12 C 0.028 3.972 13 F -0.113 7.113 14 C -0.090 4.090 15 C -0.119 4.119 16 H 0.088 0.912 17 C -0.136 4.136 18 C -0.170 4.170 19 C 0.048 3.952 20 N -0.332 5.332 21 C -0.387 4.387 22 H 0.091 0.909 23 C -0.247 4.247 24 N -0.582 5.582 25 Si 0.790 3.210 26 H -0.214 1.214 27 H -0.226 1.226 28 H -0.192 1.192 29 C 0.024 3.976 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.249 0.751 34 H 0.188 0.812 35 H 0.201 0.799 36 H 0.173 0.827 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.013 0.987 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.884 7.904 16.390 18.424 hybrid contribution 0.510 -1.254 -0.065 1.355 sum 3.394 6.650 16.325 17.952 Atomic orbital electron populations 1.22218 0.94796 1.02605 1.02277 1.20908 0.94463 0.96470 0.82714 0.89864 1.46023 1.65817 1.14755 1.09044 1.18204 0.77321 0.86081 0.83438 1.90774 1.51961 1.16876 1.85432 1.19768 1.04435 0.95016 0.93256 1.21586 0.93539 0.92148 0.99878 1.21357 1.00082 1.02890 0.89204 1.18148 1.00874 0.89263 0.85156 1.91546 1.86380 1.81392 1.51521 1.17585 1.06726 0.89667 0.83200 1.91531 1.93980 1.80137 1.45678 1.21112 0.96404 1.01838 0.89678 1.21748 1.00428 0.96223 0.93458 0.91219 1.21413 1.00856 0.98180 0.93168 1.22005 0.99934 0.96975 0.98109 1.20605 0.95178 0.90235 0.89231 1.44282 1.69983 1.17359 1.01540 1.19550 1.22993 0.92811 1.03350 0.90867 1.25737 0.98892 1.00330 0.99760 1.70194 1.32053 1.40841 1.15140 0.85362 0.79587 0.79670 0.76428 1.21390 1.22599 1.19187 1.21162 0.96308 0.91883 0.88297 0.92950 0.91903 0.90724 0.75100 0.81236 0.79892 0.82738 0.91839 0.90821 0.93228 0.91550 0.93311 0.98694 0.94375 0.92264 0.95837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 8.76 71.98 0.63 -3.16 16 2 C 0.16 3.80 2.35 44.99 0.11 3.90 16 3 H 0.08 2.11 7.58 -2.39 -0.02 2.09 16 4 N -0.70 -14.84 4.96 -445.50 -2.21 -17.05 16 5 C 0.56 12.98 7.73 86.75 0.67 13.65 16 6 O -0.57 -17.06 16.01 -3.94 -0.06 -17.12 16 7 C -0.12 -2.22 5.87 -20.09 -0.12 -2.34 16 8 C -0.05 -0.69 9.53 22.52 0.21 -0.47 16 9 C -0.12 -1.42 10.01 22.27 0.22 -1.20 16 10 C 0.09 1.46 7.31 22.50 0.16 1.62 16 11 F -0.13 -2.45 17.17 44.97 0.77 -1.68 16 12 C 0.05 0.93 7.30 22.37 0.16 1.09 16 13 F -0.13 -2.91 17.18 44.97 0.77 -2.14 16 14 C -0.07 -1.35 9.57 22.56 0.22 -1.14 16 15 C -0.10 -2.73 2.27 -10.72 -0.02 -2.76 16 16 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 17 C -0.10 -2.77 4.89 30.62 0.15 -2.62 16 18 C -0.13 -4.53 6.08 30.67 0.19 -4.34 16 19 C 0.17 7.88 5.31 86.36 0.46 8.34 16 20 N -0.61 -27.76 2.99 -699.08 -2.09 -29.85 16 21 C -0.26 -12.99 9.59 84.04 0.81 -12.19 16 22 H 0.07 3.49 7.89 -2.91 -0.02 3.47 16 23 C -0.05 -2.76 4.91 84.86 0.42 -2.34 16 24 N -0.94 -53.49 11.19 21.65 0.24 -53.25 16 25 Si 0.96 42.63 29.59 68.60 2.03 44.66 16 26 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 27 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 29 C 0.15 5.14 5.26 86.36 0.45 5.60 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.53 6.23 -2.39 -0.01 1.52 16 32 H 0.07 1.68 6.59 -2.39 -0.02 1.67 16 33 H 0.41 7.18 5.30 -92.70 -0.49 6.68 16 34 H 0.17 1.47 6.40 -2.91 -0.02 1.45 16 35 H 0.18 1.22 8.06 -2.91 -0.02 1.19 16 36 H 0.15 3.04 7.65 -2.91 -0.02 3.02 16 37 H 0.06 1.78 6.63 -2.38 -0.02 1.76 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 2.57 6.04 -2.39 -0.01 2.56 16 42 H -0.01 -0.25 8.14 -2.39 -0.02 -0.27 16 43 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 44 H 0.06 1.86 6.74 -2.39 -0.02 1.84 16 45 H 0.02 0.85 6.06 -2.39 -0.01 0.83 16 Total: -1.00 -65.16 365.48 4.71 -60.45 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.55 Total: 14.35 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 4.72 Total: 1.64 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -4.06 Total: -100.16 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.06 Total: -17.12 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 1.54 Total: -3.82 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -65.16 4.71 -60.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025440289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.168 kcal (2) G-P(sol) polarization free energy of solvation -65.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds