Wall clock time and date at job start Tue Mar 31 2020 20:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47038 * 2 1 4 4 N 1.46503 * 109.47055 * 119.99760 * 2 1 3 5 5 C 1.34776 * 120.00156 * 274.99774 * 4 2 1 6 6 O 1.21570 * 120.00075 * 0.02562 * 5 4 2 7 7 C 1.47724 * 120.00191 * 180.02562 * 5 4 2 8 8 C 1.39651 * 120.11143 * 180.02562 * 7 5 4 9 9 C 1.37850 * 119.92205 * 180.02562 * 8 7 5 10 10 C 1.38601 * 120.15197 * 359.97438 * 9 8 7 11 11 F 1.35103 * 119.88978 * 180.02562 * 10 9 8 12 12 C 1.38830 * 120.21909 * 359.97438 * 10 9 8 13 13 F 1.35104 * 119.96318 * 180.02562 * 12 10 9 14 14 C 1.38057 * 120.07667 * 359.75940 * 12 10 9 15 15 C 1.52997 * 109.47187 * 239.99951 * 2 1 3 16 16 H 1.08999 * 109.49888 * 299.93502 * 15 2 1 17 17 C 1.53041 * 109.49872 * 59.99942 * 15 2 1 18 18 C 1.53032 * 109.53808 * 181.31739 * 17 15 2 19 19 C 1.53194 * 109.31290 * 298.63188 * 18 17 15 20 20 N 1.46925 * 108.77625 * 54.63615 * 19 18 17 21 21 C 1.36939 * 120.63098 * 126.40749 * 20 19 18 22 22 H 1.07991 * 120.00206 * 207.67786 * 21 20 19 23 23 C 1.38809 * 119.99775 * 27.68281 * 21 20 19 24 24 N 1.31621 * 120.00175 * 17.34907 * 23 21 20 25 25 Si 1.86797 * 119.99968 * 197.35186 * 23 21 20 26 26 H 1.48503 * 109.47132 * 59.99879 * 25 23 21 27 27 H 1.48507 * 109.47359 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47334 * 299.99688 * 25 23 21 29 29 C 1.46924 * 118.73880 * 306.39364 * 20 19 18 30 30 H 1.09005 * 109.47262 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47431 * 299.99706 * 1 2 3 32 32 H 1.08995 * 109.47302 * 60.00119 * 1 2 3 33 33 H 0.96998 * 119.99514 * 95.00942 * 4 2 1 34 34 H 1.07998 * 120.03721 * 359.97438 * 8 7 5 35 35 H 1.08002 * 119.92084 * 179.97438 * 9 8 7 36 36 H 1.07995 * 120.07753 * 180.28126 * 14 12 10 37 37 H 1.08999 * 109.45876 * 301.34263 * 17 15 2 38 38 H 1.09002 * 109.45728 * 61.30567 * 17 15 2 39 39 H 1.08995 * 109.50032 * 58.58343 * 18 17 15 40 40 H 1.09007 * 109.49720 * 178.65379 * 18 17 15 41 41 H 1.09000 * 109.58523 * 174.42616 * 19 18 17 42 42 H 1.08997 * 109.58812 * 294.84847 * 19 18 17 43 43 H 0.96997 * 120.00152 * 179.97438 * 24 23 21 44 44 H 1.09002 * 109.58272 * 293.82148 * 29 20 19 45 45 H 1.08998 * 109.58542 * 173.39266 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8575 1.1613 2.4119 7 6 2.6400 -0.7144 3.5632 8 6 2.7738 -0.0200 4.7675 9 6 3.2346 -0.6734 5.8904 10 6 3.5650 -2.0180 5.8271 11 9 4.0157 -2.6532 6.9310 12 6 3.4333 -2.7144 4.6334 13 9 3.7564 -4.0251 4.5776 14 6 2.9675 -2.0706 3.5045 15 6 2.0400 -0.7212 -1.2492 16 1 1.6778 -1.7493 -1.2491 17 6 1.5302 -0.0003 -2.4992 18 6 2.0125 -0.7399 -3.7491 19 6 3.5442 -0.7369 -3.7801 20 7 4.0439 -1.2970 -2.5171 21 6 4.9328 -2.3386 -2.5190 22 1 4.9619 -3.0252 -1.6860 23 6 5.7965 -2.5119 -3.5918 24 7 6.0120 -1.5203 -4.4301 25 14 6.6529 -4.1524 -3.8458 26 1 5.6357 -5.2188 -4.0283 27 1 7.5148 -4.0793 -5.0530 28 1 7.4888 -4.4635 -2.6585 29 6 3.5719 -0.7180 -1.2519 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.2491 -1.6317 1.1526 34 1 2.5173 1.0278 4.8187 35 1 3.3385 -0.1363 6.8216 36 1 2.8607 -2.6134 2.5770 37 1 0.4404 0.0205 -2.4874 38 1 1.9126 1.0203 -2.5111 39 1 1.6512 -1.7680 -3.7257 40 1 1.6292 -0.2396 -4.6385 41 1 3.8939 -1.3459 -4.6137 42 1 3.9053 0.2851 -3.8948 43 1 6.6158 -1.6412 -5.1795 44 1 3.9353 0.3056 -1.1604 45 1 3.9400 -1.3146 -0.4172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025440291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:33 Heat of formation + Delta-G solvation = -87.341203 kcal Electronic energy + Delta-G solvation = -29406.462093 eV Core-core repulsion = 25060.103304 eV Total energy + Delta-G solvation = -4346.358789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.82194 -48.88712 -40.49716 -38.74778 -37.72796 -35.35334 -33.23877 -31.97432 -30.98216 -30.59704 -30.25177 -28.50963 -25.33636 -24.70369 -23.74176 -22.98621 -21.98047 -20.95160 -20.49155 -19.31752 -18.58723 -17.74545 -17.51666 -16.78470 -16.67188 -16.53140 -15.83016 -15.29668 -15.08341 -14.86182 -14.82865 -14.68447 -14.39054 -14.09762 -13.74245 -13.50655 -13.37455 -13.20857 -12.86589 -12.75452 -12.50346 -12.34840 -12.26448 -11.85212 -11.82570 -11.57319 -11.15194 -10.98798 -10.69427 -10.47559 -10.27744 -10.18544 -10.11762 -9.92659 -9.61108 -9.58786 -9.47366 -9.19544 -8.98001 -8.48472 -6.70115 -5.81488 -3.24176 0.14248 0.56125 2.39226 2.99365 3.31282 3.33094 3.36007 3.42276 3.42820 3.90240 4.07481 4.30658 4.45330 4.53419 4.68891 4.90349 5.17307 5.20346 5.26700 5.32940 5.36624 5.37454 5.50417 5.54418 5.57173 5.70640 5.73351 5.76016 5.96690 6.02435 6.07027 6.23728 6.24400 6.30429 6.38075 6.45793 6.57709 6.67267 6.75690 6.83524 6.93544 7.37460 7.41786 7.64869 7.75685 8.07578 8.41820 9.18266 9.81859 10.38457 11.26752 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.003330 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.642683 B = 8407.239611 C =10506.182450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.089 0.911 4 N -0.711 5.711 5 C 0.561 3.439 6 O -0.533 6.533 7 C -0.111 4.111 8 C -0.042 4.042 9 C -0.133 4.133 10 C 0.089 3.911 11 F -0.125 7.125 12 C 0.065 3.935 13 F -0.123 7.123 14 C -0.092 4.092 15 C -0.112 4.112 16 H 0.072 0.928 17 C -0.101 4.101 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.256 4.256 22 H 0.064 0.936 23 C 0.004 3.996 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.283 1.283 29 C 0.155 3.845 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.400 0.600 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.017 0.983 43 H 0.254 0.746 44 H 0.017 0.983 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.437 1.588 16.471 19.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.107 0.893 4 N -0.361 5.361 5 C 0.347 3.653 6 O -0.411 6.411 7 C -0.115 4.115 8 C -0.061 4.061 9 C -0.152 4.152 10 C 0.068 3.932 11 F -0.103 7.103 12 C 0.044 3.956 13 F -0.102 7.102 14 C -0.112 4.112 15 C -0.133 4.133 16 H 0.090 0.910 17 C -0.139 4.139 18 C -0.181 4.181 19 C 0.043 3.957 20 N -0.313 5.313 21 C -0.385 4.385 22 H 0.082 0.918 23 C -0.195 4.195 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.209 1.209 29 C 0.028 3.972 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.236 0.764 34 H 0.173 0.827 35 H 0.171 0.829 36 H 0.170 0.830 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.035 0.965 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.474 2.351 16.358 19.566 hybrid contribution 0.839 -1.780 -0.020 1.968 sum -9.634 0.571 16.338 18.975 Atomic orbital electron populations 1.22205 0.95450 1.02001 1.02336 1.21133 0.93625 0.97642 0.83310 0.89264 1.46057 1.66201 1.14258 1.09593 1.17931 0.78018 0.86495 0.82874 1.90789 1.50345 1.15124 1.84882 1.19965 1.03085 0.93035 0.95386 1.21231 0.93859 1.01212 0.89772 1.21086 1.01353 0.91751 1.01002 1.17951 1.01133 0.91722 0.82370 1.91556 1.86348 1.81905 1.50491 1.17477 1.04654 0.79591 0.93844 1.91578 1.90397 1.31335 1.96868 1.21315 0.97568 0.94386 0.97918 1.21996 0.99623 0.99241 0.92430 0.90972 1.21440 0.98758 0.99061 0.94610 1.22176 1.00865 0.99347 0.95734 1.20801 0.87444 0.97244 0.90213 1.44031 1.49742 1.38076 0.99469 1.19108 1.11458 1.02299 1.05644 0.91825 1.25020 0.97204 0.97428 0.99805 1.70027 1.37926 1.29393 1.17185 0.86397 0.79164 0.83985 0.77379 1.21022 1.21604 1.20886 1.20863 0.89816 0.96409 0.90088 0.92606 0.92561 0.91095 0.76380 0.82731 0.82885 0.82998 0.93071 0.92531 0.92778 0.93203 0.89554 0.96489 0.93552 0.96485 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.13 37.15 0.34 -1.52 16 2 C 0.15 1.95 2.16 -67.93 -0.15 1.80 16 3 H 0.09 1.34 7.58 -51.92 -0.39 0.95 16 4 N -0.71 -8.55 4.43 -54.79 -0.24 -8.79 16 5 C 0.56 7.10 7.73 -12.38 -0.10 7.01 16 6 O -0.53 -8.28 16.00 5.30 0.08 -8.20 16 7 C -0.11 -1.15 5.87 -104.97 -0.62 -1.77 16 8 C -0.04 -0.37 9.59 -39.20 -0.38 -0.74 16 9 C -0.13 -1.03 10.01 -39.59 -0.40 -1.43 16 10 C 0.09 0.86 7.31 -39.23 -0.29 0.57 16 11 F -0.12 -1.31 17.18 2.25 0.04 -1.27 16 12 C 0.06 0.67 7.30 -39.43 -0.29 0.38 16 13 F -0.12 -1.45 17.18 2.25 0.04 -1.41 16 14 C -0.09 -0.89 9.51 -39.12 -0.37 -1.26 16 15 C -0.11 -1.73 1.97 -90.50 -0.18 -1.91 16 16 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.10 -1.56 4.85 -26.69 -0.13 -1.69 16 18 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 19 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16 20 N -0.59 -14.24 2.99 -172.32 -0.52 -14.75 16 21 C -0.26 -6.80 9.59 -15.06 -0.14 -6.95 16 22 H 0.06 1.65 7.89 -52.49 -0.41 1.23 16 23 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 24 N -0.90 -25.81 11.19 55.49 0.62 -25.19 16 25 Si 0.90 21.33 29.59 -169.99 -5.03 16.30 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 C 0.16 3.05 5.56 -3.71 -0.02 3.03 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.77 6.40 -51.93 -0.33 0.44 16 33 H 0.40 4.19 6.45 -40.82 -0.26 3.92 16 34 H 0.16 1.25 7.65 -52.49 -0.40 0.85 16 35 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.15 1.25 6.40 -52.49 -0.34 0.91 16 37 H 0.05 0.67 6.36 -51.93 -0.33 0.34 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 41 H 0.09 2.26 6.04 -51.93 -0.31 1.94 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.05 0.95 7.45 -51.93 -0.39 0.56 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -30.76 370.47 -8.51 -39.27 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.11 Total: 1.74 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -2.98 Total: -3.29 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.14 Total: -48.73 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.08 Total: -8.20 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.08 Total: -2.68 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.76 -8.51 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025440291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.072 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds