Wall clock time and date at job start Tue Mar 31 2020 20:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47038 * 2 1 4 4 N 1.46503 * 109.47055 * 119.99760 * 2 1 3 5 5 C 1.34776 * 120.00156 * 274.99774 * 4 2 1 6 6 O 1.21570 * 120.00075 * 0.02562 * 5 4 2 7 7 C 1.47724 * 120.00191 * 180.02562 * 5 4 2 8 8 C 1.39651 * 120.11143 * 180.02562 * 7 5 4 9 9 C 1.37850 * 119.92205 * 180.02562 * 8 7 5 10 10 C 1.38601 * 120.15197 * 359.97438 * 9 8 7 11 11 F 1.35103 * 119.88978 * 180.02562 * 10 9 8 12 12 C 1.38830 * 120.21909 * 359.97438 * 10 9 8 13 13 F 1.35104 * 119.96318 * 180.02562 * 12 10 9 14 14 C 1.38057 * 120.07667 * 359.75940 * 12 10 9 15 15 C 1.52997 * 109.47187 * 239.99951 * 2 1 3 16 16 H 1.08999 * 109.49888 * 299.93502 * 15 2 1 17 17 C 1.53041 * 109.49872 * 59.99942 * 15 2 1 18 18 C 1.53032 * 109.53808 * 181.31739 * 17 15 2 19 19 C 1.53194 * 109.31290 * 298.63188 * 18 17 15 20 20 N 1.46925 * 108.77625 * 54.63615 * 19 18 17 21 21 C 1.36939 * 120.63098 * 126.40749 * 20 19 18 22 22 H 1.07991 * 120.00206 * 207.67786 * 21 20 19 23 23 C 1.38809 * 119.99775 * 27.68281 * 21 20 19 24 24 N 1.31621 * 120.00175 * 17.34907 * 23 21 20 25 25 Si 1.86797 * 119.99968 * 197.35186 * 23 21 20 26 26 H 1.48503 * 109.47132 * 59.99879 * 25 23 21 27 27 H 1.48507 * 109.47359 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47334 * 299.99688 * 25 23 21 29 29 C 1.46924 * 118.73880 * 306.39364 * 20 19 18 30 30 H 1.09005 * 109.47262 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47431 * 299.99706 * 1 2 3 32 32 H 1.08995 * 109.47302 * 60.00119 * 1 2 3 33 33 H 0.96998 * 119.99514 * 95.00942 * 4 2 1 34 34 H 1.07998 * 120.03721 * 359.97438 * 8 7 5 35 35 H 1.08002 * 119.92084 * 179.97438 * 9 8 7 36 36 H 1.07995 * 120.07753 * 180.28126 * 14 12 10 37 37 H 1.08999 * 109.45876 * 301.34263 * 17 15 2 38 38 H 1.09002 * 109.45728 * 61.30567 * 17 15 2 39 39 H 1.08995 * 109.50032 * 58.58343 * 18 17 15 40 40 H 1.09007 * 109.49720 * 178.65379 * 18 17 15 41 41 H 1.09000 * 109.58523 * 174.42616 * 19 18 17 42 42 H 1.08997 * 109.58812 * 294.84847 * 19 18 17 43 43 H 0.96997 * 120.00152 * 179.97438 * 24 23 21 44 44 H 1.09002 * 109.58272 * 293.82148 * 29 20 19 45 45 H 1.08998 * 109.58542 * 173.39266 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8575 1.1613 2.4119 7 6 2.6400 -0.7144 3.5632 8 6 2.7738 -0.0200 4.7675 9 6 3.2346 -0.6734 5.8904 10 6 3.5650 -2.0180 5.8271 11 9 4.0157 -2.6532 6.9310 12 6 3.4333 -2.7144 4.6334 13 9 3.7564 -4.0251 4.5776 14 6 2.9675 -2.0706 3.5045 15 6 2.0400 -0.7212 -1.2492 16 1 1.6778 -1.7493 -1.2491 17 6 1.5302 -0.0003 -2.4992 18 6 2.0125 -0.7399 -3.7491 19 6 3.5442 -0.7369 -3.7801 20 7 4.0439 -1.2970 -2.5171 21 6 4.9328 -2.3386 -2.5190 22 1 4.9619 -3.0252 -1.6860 23 6 5.7965 -2.5119 -3.5918 24 7 6.0120 -1.5203 -4.4301 25 14 6.6529 -4.1524 -3.8458 26 1 5.6357 -5.2188 -4.0283 27 1 7.5148 -4.0793 -5.0530 28 1 7.4888 -4.4635 -2.6585 29 6 3.5719 -0.7180 -1.2519 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.2491 -1.6317 1.1526 34 1 2.5173 1.0278 4.8187 35 1 3.3385 -0.1363 6.8216 36 1 2.8607 -2.6134 2.5770 37 1 0.4404 0.0205 -2.4874 38 1 1.9126 1.0203 -2.5111 39 1 1.6512 -1.7680 -3.7257 40 1 1.6292 -0.2396 -4.6385 41 1 3.8939 -1.3459 -4.6137 42 1 3.9053 0.2851 -3.8948 43 1 6.6158 -1.6412 -5.1795 44 1 3.9353 0.3056 -1.1604 45 1 3.9400 -1.3146 -0.4172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025440291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:32 Heat of formation + Delta-G solvation = -104.155549 kcal Electronic energy + Delta-G solvation = -29407.191218 eV Core-core repulsion = 25060.103304 eV Total energy + Delta-G solvation = -4347.087914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.62862 -49.70517 -41.46133 -39.84006 -38.92260 -36.73002 -34.76755 -33.13652 -32.31941 -31.77094 -31.34864 -29.81209 -27.13794 -25.72820 -24.67026 -24.04561 -23.59152 -22.18327 -21.56829 -20.74712 -19.51207 -18.70777 -18.54604 -18.27604 -17.48280 -17.47063 -16.95369 -16.75348 -16.12960 -16.02524 -15.92237 -15.64127 -15.47390 -15.40245 -15.02038 -14.93779 -14.66369 -14.22459 -14.12188 -14.00612 -13.71803 -13.60045 -13.31868 -13.09017 -12.99391 -12.74706 -12.62226 -12.50936 -12.30176 -12.19832 -11.97340 -11.75006 -11.49283 -11.32455 -11.12014 -10.95323 -10.51908 -10.32700 -10.14451 -9.87785 -8.66991 -7.86466 -5.31873 -0.64109 -0.15479 1.47009 1.48973 1.53629 1.55467 2.04198 2.47836 2.51115 2.58022 3.12382 3.28025 3.35995 3.48627 3.58962 3.81920 3.93909 3.96268 4.03328 4.08317 4.36862 4.41843 4.48240 4.52487 4.53779 4.66792 4.70298 4.79276 4.85667 4.88221 4.90581 4.96249 5.01806 5.08853 5.13676 5.25000 5.29805 5.35887 5.47349 5.50499 5.54215 5.59258 5.68418 5.80243 6.38854 6.45781 7.10352 7.15655 7.87445 8.39018 9.19461 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.003330 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.642683 B = 8407.239611 C =10506.182450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.071 0.929 4 N -0.708 5.708 5 C 0.562 3.438 6 O -0.565 6.565 7 C -0.122 4.122 8 C -0.037 4.037 9 C -0.117 4.117 10 C 0.084 3.916 11 F -0.130 7.130 12 C 0.048 3.952 13 F -0.135 7.135 14 C -0.087 4.087 15 C -0.096 4.096 16 H 0.079 0.921 17 C -0.097 4.097 18 C -0.130 4.130 19 C 0.172 3.828 20 N -0.609 5.609 21 C -0.262 4.262 22 H 0.070 0.930 23 C -0.050 4.050 24 N -0.936 5.936 25 Si 0.964 3.036 26 H -0.276 1.276 27 H -0.297 1.297 28 H -0.277 1.277 29 C 0.154 3.846 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.409 0.591 34 H 0.164 0.836 35 H 0.185 0.815 36 H 0.163 0.837 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.051 0.949 42 H -0.010 1.010 43 H 0.249 0.751 44 H -0.002 1.002 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.125 1.090 17.996 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.050 3.950 3 H 0.089 0.911 4 N -0.359 5.359 5 C 0.349 3.651 6 O -0.445 6.445 7 C -0.125 4.125 8 C -0.056 4.056 9 C -0.135 4.135 10 C 0.064 3.936 11 F -0.109 7.109 12 C 0.028 3.972 13 F -0.113 7.113 14 C -0.107 4.107 15 C -0.116 4.116 16 H 0.098 0.902 17 C -0.135 4.135 18 C -0.169 4.169 19 C 0.046 3.954 20 N -0.332 5.332 21 C -0.392 4.392 22 H 0.087 0.913 23 C -0.245 4.245 24 N -0.582 5.582 25 Si 0.792 3.208 26 H -0.202 1.202 27 H -0.223 1.223 28 H -0.202 1.202 29 C 0.028 3.972 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.246 0.754 34 H 0.182 0.818 35 H 0.202 0.798 36 H 0.180 0.820 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.008 0.992 43 H 0.058 0.942 44 H 0.016 0.984 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.184 1.833 17.909 21.738 hybrid contribution 1.401 -1.571 -0.436 2.149 sum -10.784 0.262 17.473 20.534 Atomic orbital electron populations 1.22136 0.93334 1.02996 1.02712 1.20945 0.95080 0.96290 0.82644 0.91106 1.46018 1.65974 1.14639 1.09231 1.18198 0.77328 0.86126 0.83399 1.90772 1.51880 1.16468 1.85424 1.19837 1.04325 0.93298 0.95065 1.21404 0.93135 1.01619 0.89453 1.21337 0.99541 0.90838 1.01807 1.18163 1.01129 0.92382 0.81942 1.91544 1.86456 1.82147 1.50708 1.17645 1.05685 0.79321 0.94533 1.91546 1.90662 1.32162 1.96966 1.21342 0.97005 0.94119 0.98194 1.21767 0.95988 1.00073 0.93777 0.90224 1.21441 1.00945 0.98161 0.92973 1.22002 0.96563 1.00184 0.98175 1.20643 0.91019 0.94691 0.89012 1.44304 1.49770 1.38007 1.01082 1.19495 1.11277 1.02922 1.05545 0.91282 1.25764 0.98449 1.00357 0.99971 1.70192 1.39018 1.31248 1.17755 0.85398 0.78115 0.80341 0.76937 1.20205 1.22284 1.20238 1.20985 0.92896 0.94933 0.88366 0.91248 0.92910 0.90022 0.75393 0.81831 0.79769 0.81951 0.89318 0.93062 0.92674 0.91300 0.93070 0.99239 0.94210 0.98385 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.13 71.98 0.66 -2.40 16 2 C 0.16 3.83 2.16 44.99 0.10 3.92 16 3 H 0.07 2.06 7.58 -2.38 -0.02 2.04 16 4 N -0.71 -15.96 4.43 -445.52 -1.97 -17.93 16 5 C 0.56 13.56 7.73 86.75 0.67 14.23 16 6 O -0.57 -17.04 16.00 -3.94 -0.06 -17.11 16 7 C -0.12 -2.34 5.87 -20.09 -0.12 -2.46 16 8 C -0.04 -0.58 9.59 22.52 0.22 -0.37 16 9 C -0.12 -1.52 10.01 22.26 0.22 -1.29 16 10 C 0.08 1.49 7.31 22.50 0.16 1.65 16 11 F -0.13 -2.54 17.18 44.97 0.77 -1.76 16 12 C 0.05 0.95 7.30 22.37 0.16 1.11 16 13 F -0.13 -3.08 17.18 44.97 0.77 -2.31 16 14 C -0.09 -1.57 9.51 22.57 0.21 -1.35 16 15 C -0.10 -2.78 1.97 -10.71 -0.02 -2.80 16 16 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 17 C -0.10 -2.80 4.85 30.62 0.15 -2.65 16 18 C -0.13 -4.56 6.08 30.67 0.19 -4.37 16 19 C 0.17 8.17 5.31 86.36 0.46 8.63 16 20 N -0.61 -29.69 2.99 -699.10 -2.09 -31.78 16 21 C -0.26 -14.08 9.59 84.03 0.81 -13.28 16 22 H 0.07 3.55 7.89 -2.92 -0.02 3.53 16 23 C -0.05 -2.77 4.91 84.86 0.42 -2.35 16 24 N -0.94 -55.40 11.19 21.65 0.24 -55.15 16 25 Si 0.96 44.37 29.59 68.60 2.03 46.40 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 27 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 28 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 29 C 0.15 6.03 5.56 86.36 0.48 6.51 16 30 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.46 6.40 -2.39 -0.02 1.44 16 33 H 0.41 7.82 6.45 -92.71 -0.60 7.23 16 34 H 0.16 2.30 7.65 -2.91 -0.02 2.28 16 35 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.16 2.44 6.40 -2.91 -0.02 2.42 16 37 H 0.09 1.96 6.36 -2.39 -0.02 1.95 16 38 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.05 2.77 6.04 -2.39 -0.01 2.76 16 42 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 44 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.05 2.01 7.45 -2.39 -0.02 2.00 16 Total: -1.00 -68.25 370.47 4.88 -63.37 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.43 Total: 13.54 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 4.76 Total: 2.74 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -3.82 Total: -104.87 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.06 Total: -17.11 kcal Atomic # 9 Polarization: -5.61 SS G_CDS: 1.54 Total: -4.07 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -68.25 4.88 -63.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025440291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.788 kcal (2) G-P(sol) polarization free energy of solvation -68.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds