Wall clock time and date at job start Tue Mar 31 2020 20:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47387 * 2 1 4 4 N 1.46500 * 109.46896 * 239.99919 * 2 1 3 5 5 C 1.34781 * 119.99871 * 85.00075 * 4 2 1 6 6 O 1.21577 * 119.99685 * 0.02562 * 5 4 2 7 7 C 1.47696 * 119.99970 * 179.97438 * 5 4 2 8 8 C 1.39643 * 120.15763 * 359.72326 * 7 5 4 9 9 C 1.38073 * 119.85342 * 179.80824 * 8 7 5 10 10 F 1.35102 * 119.91654 * 180.23045 * 9 8 7 11 11 C 1.38651 * 120.16499 * 0.44919 * 9 8 7 12 12 C 1.38190 * 120.31621 * 359.78560 * 11 9 8 13 13 C 1.38315 * 120.14304 * 359.97438 * 12 11 9 14 14 F 1.35097 * 120.08421 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47298 * 120.00428 * 2 1 3 16 16 H 1.09005 * 109.52424 * 59.91283 * 15 2 1 17 17 C 1.53041 * 109.49655 * 299.83927 * 15 2 1 18 18 C 1.53070 * 109.65895 * 178.74768 * 17 15 2 19 19 C 1.53192 * 109.29486 * 61.15317 * 18 17 15 20 20 N 1.46923 * 108.89086 * 305.57609 * 19 18 17 21 21 C 1.36938 * 120.62890 * 233.55909 * 20 19 18 22 22 H 1.08011 * 119.99821 * 151.82869 * 21 20 19 23 23 C 1.38810 * 120.00150 * 331.82504 * 21 20 19 24 24 N 1.31613 * 120.00273 * 343.07447 * 23 21 20 25 25 Si 1.86803 * 119.99828 * 163.06738 * 23 21 20 26 26 H 1.48503 * 109.47179 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47229 * 120.00279 * 25 23 21 28 28 H 1.48502 * 109.47136 * 240.00365 * 25 23 21 29 29 C 1.46928 * 118.73969 * 53.53853 * 20 19 18 30 30 H 1.08999 * 109.47018 * 59.99567 * 1 2 3 31 31 H 1.09000 * 109.46924 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46896 * 299.99539 * 1 2 3 33 33 H 0.96997 * 120.00877 * 264.99723 * 4 2 1 34 34 H 1.08007 * 120.07424 * 0.02562 * 8 7 5 35 35 H 1.07997 * 119.84664 * 179.76214 * 11 9 8 36 36 H 1.07994 * 119.93260 * 179.97438 * 12 11 9 37 37 H 1.09004 * 109.45782 * 298.70130 * 17 15 2 38 38 H 1.08998 * 109.46417 * 58.67464 * 17 15 2 39 39 H 1.08996 * 109.39171 * 301.27441 * 18 17 15 40 40 H 1.09003 * 109.62547 * 181.16407 * 18 17 15 41 41 H 1.09002 * 109.58742 * 185.72218 * 19 18 17 42 42 H 1.08998 * 109.59351 * 65.43846 * 19 18 17 43 43 H 0.96997 * 120.00271 * 180.02562 * 24 23 21 44 44 H 1.09004 * 109.58144 * 66.18005 * 29 20 19 45 45 H 1.08998 * 109.58393 * 186.45981 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8583 1.1615 -2.4116 7 6 2.6398 -0.7144 -3.5630 8 6 2.9788 -2.0677 -3.5025 9 6 3.4351 -2.7132 -4.6345 10 9 3.7590 -4.0236 -4.5785 11 6 3.5660 -2.0188 -5.8275 12 6 3.2371 -0.6783 -5.8940 13 6 2.7741 -0.0201 -4.7691 14 9 2.4525 1.2904 -4.8356 15 6 2.0401 -0.7213 1.2492 16 1 1.6759 -1.7488 1.2507 17 6 1.5336 0.0019 2.4992 18 6 2.0159 -0.7348 3.7513 19 6 3.5476 -0.7382 3.7781 20 7 4.0442 -1.3006 2.5149 21 6 4.9301 -2.3449 2.5166 22 1 4.9508 -3.0369 1.6876 23 6 5.8015 -2.5140 3.5838 24 7 6.0199 -1.5205 4.4189 25 14 6.6641 -4.1518 3.8347 26 1 6.2515 -5.0974 2.7666 27 1 8.1344 -3.9510 3.7765 28 1 6.2926 -4.7090 5.1602 29 6 3.5719 -0.7217 1.2498 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6318 -1.1528 34 1 2.8810 -2.6091 -2.5731 35 1 3.9270 -2.5279 -6.7089 36 1 3.3419 -0.1434 -6.8263 37 1 1.9183 1.0217 2.5096 38 1 0.4439 0.0249 2.4890 39 1 1.6501 -1.7613 3.7307 40 1 1.6377 -0.2311 4.6409 41 1 3.8971 -1.3474 4.6117 42 1 3.9134 0.2822 3.8926 43 1 6.6292 -1.6385 5.1644 44 1 3.9377 0.3009 1.1569 45 1 3.9396 -1.3185 0.4151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025443240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:41 Heat of formation + Delta-G solvation = -85.922413 kcal Electronic energy + Delta-G solvation = -29671.696814 eV Core-core repulsion = 25325.399549 eV Total energy + Delta-G solvation = -4346.297266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.25396 -49.09671 -40.31570 -38.72241 -37.75977 -35.30337 -33.24812 -32.22033 -30.69571 -30.41836 -30.30090 -28.49936 -25.36841 -24.88830 -23.62505 -22.80572 -21.97224 -20.96699 -20.44613 -19.28663 -18.41813 -17.72509 -17.49566 -16.77309 -16.34906 -16.24334 -15.77395 -15.60791 -15.01035 -14.84857 -14.71126 -14.59362 -14.34379 -13.93562 -13.66247 -13.47499 -13.38824 -13.19616 -12.86798 -12.72000 -12.48135 -12.28523 -12.20141 -11.85399 -11.82319 -11.54753 -11.13593 -10.99459 -10.69499 -10.44499 -10.23070 -10.17114 -10.03571 -9.91292 -9.75288 -9.58512 -9.44931 -9.04081 -8.90576 -8.48662 -6.68499 -5.80853 -3.24004 0.19606 0.55527 2.47483 2.99028 3.29599 3.34777 3.42799 3.44413 3.71376 3.76483 4.09624 4.27612 4.45584 4.56445 4.67943 4.91654 5.11710 5.22612 5.34324 5.35727 5.38790 5.45884 5.51385 5.54463 5.58143 5.61381 5.73381 5.78112 5.99090 6.04358 6.09448 6.26360 6.28574 6.32108 6.40521 6.48562 6.59322 6.68698 6.77612 6.85108 6.95501 7.38450 7.44315 7.66244 7.76747 8.12060 8.42677 9.19035 9.82523 10.39525 11.27400 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010736 B = 0.003473 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.516310 B = 8060.287275 C = 9912.478790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.089 0.911 4 N -0.710 5.710 5 C 0.558 3.442 6 O -0.523 6.523 7 C -0.140 4.140 8 C -0.092 4.092 9 C 0.084 3.916 10 F -0.130 7.130 11 C -0.101 4.101 12 C -0.136 4.136 13 C 0.149 3.851 14 F -0.110 7.110 15 C -0.111 4.111 16 H 0.072 0.928 17 C -0.101 4.101 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.254 4.254 22 H 0.065 0.935 23 C 0.004 3.996 24 N -0.901 5.901 25 Si 0.900 3.100 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.289 1.289 29 C 0.155 3.845 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.400 0.600 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.017 0.983 43 H 0.253 0.747 44 H 0.017 0.983 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.672 -0.399 -17.651 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 H 0.107 0.893 4 N -0.361 5.361 5 C 0.343 3.657 6 O -0.400 6.400 7 C -0.144 4.144 8 C -0.111 4.111 9 C 0.065 3.935 10 F -0.109 7.109 11 C -0.120 4.120 12 C -0.155 4.155 13 C 0.128 3.872 14 F -0.088 7.088 15 C -0.132 4.132 16 H 0.090 0.910 17 C -0.139 4.139 18 C -0.181 4.181 19 C 0.043 3.957 20 N -0.313 5.313 21 C -0.383 4.383 22 H 0.082 0.918 23 C -0.195 4.195 24 N -0.545 5.545 25 Si 0.730 3.270 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.215 1.215 29 C 0.028 3.972 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.236 0.764 34 H 0.169 0.831 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.035 0.965 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.751 0.455 -17.508 20.045 hybrid contribution 0.698 -1.362 0.234 1.548 sum -9.053 -0.907 -17.274 19.523 Atomic orbital electron populations 1.22205 0.95468 1.01971 1.02334 1.21124 0.93620 0.97646 0.83252 0.89300 1.46009 1.66468 1.14182 1.09446 1.17814 0.78461 0.86556 0.82831 1.90846 1.49631 1.14815 1.84696 1.19986 1.05953 0.94083 0.94417 1.21263 0.97676 0.93329 0.98858 1.17475 1.02255 0.79167 0.94624 1.91564 1.90323 1.31965 1.97005 1.21184 0.99308 0.94009 0.97513 1.21010 1.01471 0.94568 0.98430 1.17690 0.97263 0.79094 0.93120 1.91622 1.89289 1.31184 1.96662 1.21978 0.99596 0.99216 0.92410 0.90969 1.21443 0.98774 0.99075 0.94587 1.22177 1.00853 0.99350 0.95715 1.20787 0.87472 0.97252 0.90183 1.44037 1.49963 1.37881 0.99453 1.19188 1.11159 1.01913 1.06058 0.91765 1.25038 0.97187 0.97428 0.99864 1.70042 1.37670 1.29286 1.17508 0.86260 0.79117 0.83819 0.77787 1.20262 1.21724 1.21540 1.20862 0.89822 0.96437 0.90075 0.92580 0.92607 0.91093 0.76428 0.83095 0.83184 0.82947 0.92546 0.93066 0.92797 0.93169 0.89615 0.96495 0.93669 0.96499 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.14 37.16 0.34 -1.63 16 2 C 0.15 2.07 2.16 -67.93 -0.15 1.93 16 3 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 4 N -0.71 -9.20 4.43 -54.79 -0.24 -9.44 16 5 C 0.56 7.95 7.73 -12.40 -0.10 7.86 16 6 O -0.52 -9.22 15.00 5.30 0.08 -9.14 16 7 C -0.14 -1.65 5.88 -104.92 -0.62 -2.26 16 8 C -0.09 -0.90 9.51 -39.12 -0.37 -1.27 16 9 C 0.08 0.77 7.29 -39.49 -0.29 0.48 16 10 F -0.13 -1.30 17.26 2.25 0.04 -1.27 16 11 C -0.10 -0.73 10.01 -39.45 -0.39 -1.12 16 12 C -0.14 -1.06 10.01 -39.57 -0.40 -1.46 16 13 C 0.15 1.67 7.28 -38.96 -0.28 1.39 16 14 F -0.11 -1.48 15.55 2.25 0.04 -1.45 16 15 C -0.11 -1.77 1.98 -90.50 -0.18 -1.95 16 16 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 17 C -0.10 -1.60 4.85 -26.67 -0.13 -1.73 16 18 C -0.14 -2.61 6.09 -26.60 -0.16 -2.77 16 19 C 0.17 3.95 5.30 -3.71 -0.02 3.93 16 20 N -0.59 -14.39 3.00 -172.32 -0.52 -14.91 16 21 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 22 H 0.06 1.68 7.89 -52.48 -0.41 1.26 16 23 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 24 N -0.90 -25.93 11.20 55.49 0.62 -25.31 16 25 Si 0.90 21.35 29.59 -169.99 -5.03 16.33 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 C 0.15 3.11 5.55 -3.71 -0.02 3.09 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.81 6.41 -51.93 -0.33 0.48 16 33 H 0.40 4.45 6.45 -40.82 -0.26 4.18 16 34 H 0.15 1.27 6.41 -52.48 -0.34 0.93 16 35 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.70 6.37 -51.93 -0.33 0.37 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.05 0.97 7.44 -51.93 -0.39 0.58 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -31.77 368.77 -8.58 -40.36 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.13 Total: 1.71 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -3.00 Total: -2.44 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.14 Total: -49.66 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.07 Total: -2.71 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.77 -8.58 -40.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025443240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.567 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds