Wall clock time and date at job start Tue Mar 31 2020 20:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47387 * 2 1 4 4 N 1.46500 * 109.46896 * 239.99919 * 2 1 3 5 5 C 1.34781 * 119.99871 * 85.00075 * 4 2 1 6 6 O 1.21577 * 119.99685 * 0.02562 * 5 4 2 7 7 C 1.47696 * 119.99970 * 179.97438 * 5 4 2 8 8 C 1.39643 * 120.15763 * 359.72326 * 7 5 4 9 9 C 1.38073 * 119.85342 * 179.80824 * 8 7 5 10 10 F 1.35102 * 119.91654 * 180.23045 * 9 8 7 11 11 C 1.38651 * 120.16499 * 0.44919 * 9 8 7 12 12 C 1.38190 * 120.31621 * 359.78560 * 11 9 8 13 13 C 1.38315 * 120.14304 * 359.97438 * 12 11 9 14 14 F 1.35097 * 120.08421 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47298 * 120.00428 * 2 1 3 16 16 H 1.09005 * 109.52424 * 59.91283 * 15 2 1 17 17 C 1.53041 * 109.49655 * 299.83927 * 15 2 1 18 18 C 1.53070 * 109.65895 * 178.74768 * 17 15 2 19 19 C 1.53192 * 109.29486 * 61.15317 * 18 17 15 20 20 N 1.46923 * 108.89086 * 305.57609 * 19 18 17 21 21 C 1.36938 * 120.62890 * 233.55909 * 20 19 18 22 22 H 1.08011 * 119.99821 * 151.82869 * 21 20 19 23 23 C 1.38810 * 120.00150 * 331.82504 * 21 20 19 24 24 N 1.31613 * 120.00273 * 343.07447 * 23 21 20 25 25 Si 1.86803 * 119.99828 * 163.06738 * 23 21 20 26 26 H 1.48503 * 109.47179 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47229 * 120.00279 * 25 23 21 28 28 H 1.48502 * 109.47136 * 240.00365 * 25 23 21 29 29 C 1.46928 * 118.73969 * 53.53853 * 20 19 18 30 30 H 1.08999 * 109.47018 * 59.99567 * 1 2 3 31 31 H 1.09000 * 109.46924 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46896 * 299.99539 * 1 2 3 33 33 H 0.96997 * 120.00877 * 264.99723 * 4 2 1 34 34 H 1.08007 * 120.07424 * 0.02562 * 8 7 5 35 35 H 1.07997 * 119.84664 * 179.76214 * 11 9 8 36 36 H 1.07994 * 119.93260 * 179.97438 * 12 11 9 37 37 H 1.09004 * 109.45782 * 298.70130 * 17 15 2 38 38 H 1.08998 * 109.46417 * 58.67464 * 17 15 2 39 39 H 1.08996 * 109.39171 * 301.27441 * 18 17 15 40 40 H 1.09003 * 109.62547 * 181.16407 * 18 17 15 41 41 H 1.09002 * 109.58742 * 185.72218 * 19 18 17 42 42 H 1.08998 * 109.59351 * 65.43846 * 19 18 17 43 43 H 0.96997 * 120.00271 * 180.02562 * 24 23 21 44 44 H 1.09004 * 109.58144 * 66.18005 * 29 20 19 45 45 H 1.08998 * 109.58393 * 186.45981 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8583 1.1615 -2.4116 7 6 2.6398 -0.7144 -3.5630 8 6 2.9788 -2.0677 -3.5025 9 6 3.4351 -2.7132 -4.6345 10 9 3.7590 -4.0236 -4.5785 11 6 3.5660 -2.0188 -5.8275 12 6 3.2371 -0.6783 -5.8940 13 6 2.7741 -0.0201 -4.7691 14 9 2.4525 1.2904 -4.8356 15 6 2.0401 -0.7213 1.2492 16 1 1.6759 -1.7488 1.2507 17 6 1.5336 0.0019 2.4992 18 6 2.0159 -0.7348 3.7513 19 6 3.5476 -0.7382 3.7781 20 7 4.0442 -1.3006 2.5149 21 6 4.9301 -2.3449 2.5166 22 1 4.9508 -3.0369 1.6876 23 6 5.8015 -2.5140 3.5838 24 7 6.0199 -1.5205 4.4189 25 14 6.6641 -4.1518 3.8347 26 1 6.2515 -5.0974 2.7666 27 1 8.1344 -3.9510 3.7765 28 1 6.2926 -4.7090 5.1602 29 6 3.5719 -0.7217 1.2498 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6318 -1.1528 34 1 2.8810 -2.6091 -2.5731 35 1 3.9270 -2.5279 -6.7089 36 1 3.3419 -0.1434 -6.8263 37 1 1.9183 1.0217 2.5096 38 1 0.4439 0.0249 2.4890 39 1 1.6501 -1.7613 3.7307 40 1 1.6377 -0.2311 4.6409 41 1 3.8971 -1.3474 4.6117 42 1 3.9134 0.2822 3.8926 43 1 6.6292 -1.6385 5.1644 44 1 3.9377 0.3009 1.1569 45 1 3.9396 -1.3185 0.4151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025443240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:40 Heat of formation + Delta-G solvation = -104.068838 kcal Electronic energy + Delta-G solvation = -29672.483703 eV Core-core repulsion = 25325.399549 eV Total energy + Delta-G solvation = -4347.084154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.00381 -49.99279 -41.37660 -39.78904 -39.01368 -36.75594 -34.78966 -33.34907 -32.37184 -31.67310 -31.09313 -29.86865 -27.15959 -25.92445 -24.73502 -23.77741 -23.60826 -22.22735 -21.61399 -20.76365 -19.39759 -18.65866 -18.54974 -18.29048 -17.31804 -17.11831 -16.92996 -16.73970 -16.43841 -15.94630 -15.90398 -15.66624 -15.41314 -15.37543 -14.97654 -14.82009 -14.65861 -14.21678 -14.11834 -14.03515 -13.75165 -13.64026 -13.30389 -13.02737 -12.96107 -12.81122 -12.66676 -12.52667 -12.26953 -12.22379 -11.94875 -11.77143 -11.51491 -11.34018 -11.13083 -10.96408 -10.54710 -10.49551 -10.13458 -9.71831 -8.67889 -7.87070 -5.33498 -0.58083 -0.16125 1.45971 1.47923 1.58079 1.59057 1.97257 2.41171 2.50549 2.97151 3.01006 3.27746 3.39043 3.47647 3.58043 3.85012 3.92167 3.96310 4.00668 4.05614 4.33542 4.39245 4.44035 4.49089 4.63668 4.68062 4.76330 4.80093 4.82709 4.85858 4.87262 4.92317 4.94642 5.04609 5.10323 5.22419 5.26053 5.33023 5.44102 5.49344 5.57346 5.58995 5.66995 5.78622 6.37172 6.40670 7.05743 7.14703 7.85720 8.38157 9.19264 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010736 B = 0.003473 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.516310 B = 8060.287275 C = 9912.478790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 H 0.066 0.934 4 N -0.704 5.704 5 C 0.555 3.445 6 O -0.565 6.565 7 C -0.160 4.160 8 C -0.092 4.092 9 C 0.078 3.922 10 F -0.134 7.134 11 C -0.081 4.081 12 C -0.121 4.121 13 C 0.126 3.874 14 F -0.130 7.130 15 C -0.094 4.094 16 H 0.082 0.918 17 C -0.098 4.098 18 C -0.130 4.130 19 C 0.172 3.828 20 N -0.608 5.608 21 C -0.261 4.261 22 H 0.070 0.930 23 C -0.051 4.051 24 N -0.937 5.937 25 Si 0.965 3.035 26 H -0.263 1.263 27 H -0.295 1.295 28 H -0.290 1.290 29 C 0.154 3.846 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.410 0.590 34 H 0.160 0.840 35 H 0.187 0.813 36 H 0.184 0.816 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.051 0.949 42 H -0.012 1.012 43 H 0.249 0.751 44 H -0.005 1.005 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.884 -2.235 -19.721 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.050 3.950 3 H 0.084 0.916 4 N -0.355 5.355 5 C 0.343 3.657 6 O -0.445 6.445 7 C -0.164 4.164 8 C -0.111 4.111 9 C 0.058 3.942 10 F -0.113 7.113 11 C -0.100 4.100 12 C -0.140 4.140 13 C 0.105 3.895 14 F -0.108 7.108 15 C -0.114 4.114 16 H 0.100 0.900 17 C -0.136 4.136 18 C -0.168 4.168 19 C 0.047 3.953 20 N -0.331 5.331 21 C -0.391 4.391 22 H 0.088 0.912 23 C -0.246 4.246 24 N -0.583 5.583 25 Si 0.794 3.206 26 H -0.187 1.187 27 H -0.223 1.223 28 H -0.217 1.217 29 C 0.028 3.972 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.247 0.753 34 H 0.177 0.823 35 H 0.204 0.796 36 H 0.202 0.798 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.006 0.994 43 H 0.058 0.942 44 H 0.013 0.987 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.986 -1.409 -19.598 22.511 hybrid contribution 1.136 -0.785 0.803 1.598 sum -9.849 -2.194 -18.795 21.332 Atomic orbital electron populations 1.22131 0.93303 1.03090 1.02571 1.20953 0.95131 0.96176 0.82736 0.91569 1.45947 1.66071 1.14568 1.08952 1.18211 0.77693 0.86165 0.83658 1.90816 1.51654 1.16607 1.85434 1.19811 1.07991 0.94880 0.93702 1.21302 0.97478 0.92532 0.99800 1.17634 1.02346 0.79055 0.95129 1.91559 1.90381 1.32296 1.97058 1.21580 0.97031 0.93492 0.97874 1.21326 0.99594 0.94712 0.98318 1.18120 0.98530 0.78571 0.94239 1.91568 1.89743 1.32687 1.96799 1.21747 0.95997 1.00114 0.93552 0.89950 1.21447 1.00978 0.98111 0.93024 1.22004 0.96541 1.00277 0.98027 1.20632 0.91046 0.94649 0.88992 1.44310 1.50038 1.37809 1.00963 1.19572 1.11022 1.02488 1.05989 0.91185 1.25809 0.98402 1.00454 0.99983 1.70206 1.38747 1.31239 1.18123 0.85239 0.77454 0.80196 0.77756 1.18669 1.22262 1.21712 1.20969 0.92875 0.94826 0.88495 0.93355 0.90968 0.89869 0.75268 0.82268 0.79589 0.79841 0.93273 0.89281 0.92479 0.91210 0.93010 0.99386 0.94219 0.98714 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.14 71.98 0.66 -2.73 16 2 C 0.15 4.21 2.16 44.99 0.10 4.30 16 3 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 4 N -0.70 -17.90 4.43 -445.53 -1.97 -19.87 16 5 C 0.56 16.01 7.73 86.74 0.67 16.68 16 6 O -0.56 -20.58 15.00 -3.96 -0.06 -20.64 16 7 C -0.16 -3.69 5.88 -20.06 -0.12 -3.81 16 8 C -0.09 -1.67 9.51 22.57 0.21 -1.46 16 9 C 0.08 1.23 7.29 22.33 0.16 1.39 16 10 F -0.13 -2.36 17.26 44.97 0.78 -1.58 16 11 C -0.08 -0.88 10.01 22.36 0.22 -0.65 16 12 C -0.12 -1.55 10.01 22.28 0.22 -1.33 16 13 C 0.13 2.73 7.28 22.67 0.17 2.90 16 14 F -0.13 -3.55 15.55 44.97 0.70 -2.86 16 15 C -0.09 -2.86 1.98 -10.72 -0.02 -2.88 16 16 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 17 C -0.10 -2.93 4.85 30.63 0.15 -2.78 16 18 C -0.13 -4.62 6.09 30.68 0.19 -4.43 16 19 C 0.17 8.31 5.30 86.36 0.46 8.76 16 20 N -0.61 -30.11 3.00 -699.10 -2.09 -32.20 16 21 C -0.26 -14.07 9.58 84.03 0.81 -13.27 16 22 H 0.07 3.62 7.89 -2.90 -0.02 3.60 16 23 C -0.05 -2.84 4.92 84.86 0.42 -2.43 16 24 N -0.94 -55.78 11.20 21.65 0.24 -55.54 16 25 Si 0.97 44.36 29.59 68.60 2.03 46.39 16 26 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 28 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 29 C 0.15 6.25 5.55 86.36 0.48 6.73 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.64 6.41 -2.39 -0.02 1.63 16 33 H 0.41 8.67 6.45 -92.71 -0.60 8.07 16 34 H 0.16 2.48 6.41 -2.91 -0.02 2.46 16 35 H 0.19 0.71 8.06 -2.91 -0.02 0.68 16 36 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.09 2.08 6.37 -2.39 -0.02 2.06 16 39 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.05 2.83 6.06 -2.39 -0.01 2.82 16 42 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 43 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 44 H -0.01 -0.23 8.14 -2.39 -0.02 -0.25 16 45 H 0.05 2.09 7.44 -2.39 -0.02 2.07 16 Total: -1.00 -72.34 368.77 4.82 -67.51 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.43 Total: 13.78 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 4.77 Total: 5.01 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -3.82 Total: -107.61 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.06 Total: -20.64 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 1.48 Total: -4.44 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -72.34 4.82 -67.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025443240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.554 kcal (2) G-P(sol) polarization free energy of solvation -72.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds