Wall clock time and date at job start Tue Mar 31 2020 20:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47142 * 2 1 4 4 N 1.46502 * 109.47248 * 120.00343 * 2 1 3 5 5 C 1.34774 * 119.99521 * 274.99634 * 4 2 1 6 6 O 1.21566 * 120.00356 * 0.02562 * 5 4 2 7 7 C 1.47701 * 119.99489 * 180.02562 * 5 4 2 8 8 C 1.39684 * 120.15824 * 359.97438 * 7 5 4 9 9 C 1.37846 * 119.92792 * 180.02562 * 8 7 5 10 10 C 1.38451 * 120.23713 * 359.97438 * 9 8 7 11 11 C 1.38382 * 120.31906 * 0.02562 * 10 9 8 12 12 F 1.35099 * 119.96781 * 180.02562 * 11 10 9 13 13 C 1.38553 * 120.06816 * 359.72824 * 11 10 9 14 14 F 1.35095 * 120.11927 * 180.27585 * 13 11 10 15 15 C 1.52999 * 109.46641 * 239.99940 * 2 1 3 16 16 H 1.08997 * 109.50189 * 299.93977 * 15 2 1 17 17 C 1.53047 * 109.49853 * 60.00097 * 15 2 1 18 18 C 1.53035 * 109.53852 * 181.31325 * 17 15 2 19 19 C 1.53198 * 109.31692 * 298.63715 * 18 17 15 20 20 N 1.46922 * 108.77400 * 54.63105 * 19 18 17 21 21 C 1.36941 * 120.62777 * 126.37393 * 20 19 18 22 22 H 1.08007 * 119.99790 * 207.98476 * 21 20 19 23 23 C 1.38804 * 120.00077 * 27.98043 * 21 20 19 24 24 N 1.31620 * 119.99909 * 17.50728 * 23 21 20 25 25 Si 1.86803 * 120.00190 * 197.50219 * 23 21 20 26 26 H 1.48502 * 109.46934 * 94.07065 * 25 23 21 27 27 H 1.48507 * 109.47089 * 214.07101 * 25 23 21 28 28 H 1.48503 * 109.47071 * 334.07096 * 25 23 21 29 29 C 1.46928 * 118.74344 * 306.39769 * 20 19 18 30 30 H 1.09000 * 109.47215 * 59.99786 * 1 2 3 31 31 H 1.08997 * 109.47601 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46776 * 300.00003 * 1 2 3 33 33 H 0.96992 * 119.99849 * 94.99498 * 4 2 1 34 34 H 1.07999 * 120.03412 * 359.97438 * 8 7 5 35 35 H 1.07991 * 119.88169 * 179.97438 * 9 8 7 36 36 H 1.08007 * 119.84137 * 180.02562 * 10 9 8 37 37 H 1.08990 * 109.45830 * 301.33725 * 17 15 2 38 38 H 1.09004 * 109.45942 * 61.29396 * 17 15 2 39 39 H 1.09000 * 109.49606 * 58.58539 * 18 17 15 40 40 H 1.08999 * 109.50045 * 178.68541 * 18 17 15 41 41 H 1.08999 * 109.57996 * 294.85046 * 19 18 17 42 42 H 1.08999 * 109.58966 * 174.42598 * 19 18 17 43 43 H 0.97006 * 120.00194 * 179.97438 * 24 23 21 44 44 H 1.09007 * 109.58369 * 293.82213 * 29 20 19 45 45 H 1.08993 * 109.58965 * 173.39546 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0183 2.3570 6 8 1.8576 1.1611 2.4118 7 6 2.6401 -0.7145 3.5628 8 6 2.9732 -2.0698 3.5038 9 6 3.4322 -2.7149 4.6321 10 6 3.5651 -2.0243 5.8247 11 6 3.2380 -0.6815 5.8945 12 9 3.3709 -0.0144 7.0618 13 6 2.7802 -0.0190 4.7671 14 9 2.4659 1.2932 4.8327 15 6 2.0399 -0.7213 -1.2493 16 1 1.6777 -1.7493 -1.2492 17 6 1.5300 -0.0003 -2.4993 18 6 2.0124 -0.7398 -3.7492 19 6 3.5440 -0.7370 -3.7803 20 7 4.0437 -1.2971 -2.5173 21 6 4.9319 -2.3393 -2.5193 22 1 4.9574 -3.0288 -1.6883 23 6 5.7994 -2.5098 -3.5894 24 7 6.0210 -1.5147 -4.4219 25 14 6.6526 -4.1514 -3.8479 26 1 5.8590 -4.9783 -4.7922 27 1 8.0081 -3.9218 -4.4095 28 1 6.7688 -4.8590 -2.5475 29 6 3.5718 -0.7182 -1.2520 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6318 1.1525 34 1 2.8704 -2.6117 2.5753 35 1 3.6891 -3.7628 4.5857 36 1 3.9258 -2.5361 6.7048 37 1 0.4404 0.0205 -2.4874 38 1 1.9124 1.0204 -2.5111 39 1 1.6509 -1.7679 -3.7258 40 1 1.6296 -0.2393 -4.6386 41 1 3.9051 0.2850 -3.8950 42 1 3.8938 -1.3460 -4.6139 43 1 6.6276 -1.6337 -5.1695 44 1 3.9353 0.3054 -1.1605 45 1 3.9399 -1.3148 -0.4174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025515750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:52 Heat of formation + Delta-G solvation = -84.809047 kcal Electronic energy + Delta-G solvation = -29622.255819 eV Core-core repulsion = 25276.006832 eV Total energy + Delta-G solvation = -4346.248986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.69128 -48.73752 -40.35077 -38.76861 -37.77746 -35.31436 -33.20365 -32.00397 -30.84461 -30.59258 -30.27081 -28.50408 -25.38016 -24.87514 -23.44877 -22.94188 -21.98533 -21.01326 -20.44911 -19.30656 -18.52649 -17.59097 -17.45014 -16.77344 -16.61134 -16.40804 -15.80073 -15.25358 -15.20316 -14.95709 -14.71285 -14.56387 -14.37143 -14.03509 -13.68212 -13.43356 -13.31136 -13.21883 -12.77176 -12.50304 -12.40917 -12.37815 -12.26950 -12.04100 -11.83453 -11.56051 -11.14946 -11.00451 -10.71717 -10.45622 -10.24980 -10.18317 -10.03614 -9.92554 -9.60096 -9.52744 -9.45421 -9.12608 -8.97634 -8.49852 -6.70533 -5.82323 -3.25315 0.20072 0.54402 2.49418 2.91190 3.30833 3.33633 3.40287 3.42219 3.46450 4.01025 4.18226 4.27784 4.42917 4.45744 4.66659 4.91193 5.19432 5.22952 5.29080 5.33614 5.37858 5.50269 5.51376 5.53229 5.56585 5.70969 5.74332 5.77301 5.98439 6.03599 6.08997 6.25412 6.27835 6.31104 6.39777 6.47898 6.58283 6.67698 6.76426 6.84081 6.94455 7.37018 7.44341 7.64235 7.74756 8.12509 8.40953 9.17254 9.80977 10.38067 11.25918 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.003132 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.648189 B = 8936.936056 C =10545.665016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.089 0.911 4 N -0.709 5.709 5 C 0.557 3.443 6 O -0.524 6.524 7 C -0.142 4.142 8 C -0.065 4.065 9 C -0.107 4.107 10 C -0.103 4.103 11 C 0.055 3.945 12 F -0.126 7.126 13 C 0.126 3.874 14 F -0.104 7.104 15 C -0.111 4.111 16 H 0.072 0.928 17 C -0.101 4.101 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.255 4.255 22 H 0.065 0.935 23 C 0.004 3.996 24 N -0.900 5.900 25 Si 0.901 3.099 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.279 1.279 29 C 0.155 3.845 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.400 0.600 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.017 0.983 42 H 0.085 0.915 43 H 0.254 0.746 44 H 0.017 0.983 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.440 -2.741 16.205 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.107 0.893 4 N -0.360 5.360 5 C 0.343 3.657 6 O -0.400 6.400 7 C -0.146 4.146 8 C -0.084 4.084 9 C -0.125 4.125 10 C -0.122 4.122 11 C 0.035 3.965 12 F -0.105 7.105 13 C 0.104 3.896 14 F -0.082 7.082 15 C -0.132 4.132 16 H 0.090 0.910 17 C -0.139 4.139 18 C -0.181 4.181 19 C 0.043 3.957 20 N -0.313 5.313 21 C -0.384 4.384 22 H 0.082 0.918 23 C -0.195 4.195 24 N -0.544 5.544 25 Si 0.731 3.269 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.204 1.204 29 C 0.028 3.972 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.236 0.764 34 H 0.164 0.836 35 H 0.166 0.834 36 H 0.168 0.832 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.035 0.965 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.520 -1.795 16.117 18.804 hybrid contribution 0.639 -0.928 0.030 1.127 sum -8.882 -2.722 16.146 18.628 Atomic orbital electron populations 1.22206 0.95479 1.01963 1.02341 1.21125 0.93613 0.97669 0.83250 0.89334 1.45971 1.66549 1.14157 1.09356 1.17812 0.78488 0.86553 0.82862 1.90847 1.49518 1.14960 1.84711 1.20068 1.06021 0.95106 0.93418 1.21398 0.95121 0.92114 0.99780 1.21064 0.99080 1.01157 0.91228 1.21298 0.99073 0.91430 1.00354 1.17578 1.06008 0.91535 0.81371 1.91551 1.93785 1.80372 1.44750 1.17676 0.99665 0.79488 0.92754 1.91629 1.89484 1.30462 1.96579 1.21985 0.99593 0.99205 0.92392 0.90956 1.21444 0.98782 0.99087 0.94604 1.22173 1.00836 0.99334 0.95743 1.20794 0.87474 0.97248 0.90174 1.44041 1.49773 1.38054 0.99468 1.19161 1.11289 1.02112 1.05862 0.91752 1.25038 0.97183 0.97404 0.99906 1.70048 1.37746 1.29167 1.17484 0.86298 0.78713 0.83855 0.78005 1.21479 1.21783 1.20421 1.20865 0.89824 0.96439 0.90051 0.91104 0.92596 0.92594 0.76396 0.83589 0.83361 0.83204 0.93059 0.92535 0.92769 0.93207 0.96479 0.89637 0.93614 0.96494 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.13 37.16 0.34 -1.61 16 2 C 0.15 2.04 2.16 -67.93 -0.15 1.89 16 3 H 0.09 1.41 7.58 -51.93 -0.39 1.02 16 4 N -0.71 -8.90 4.43 -54.80 -0.24 -9.14 16 5 C 0.56 7.94 7.73 -12.40 -0.10 7.85 16 6 O -0.52 -9.42 15.00 5.31 0.08 -9.34 16 7 C -0.14 -1.67 5.88 -104.92 -0.62 -2.29 16 8 C -0.07 -0.54 9.54 -39.19 -0.37 -0.91 16 9 C -0.11 -0.69 10.03 -39.65 -0.40 -1.09 16 10 C -0.10 -0.74 10.01 -39.45 -0.40 -1.14 16 11 C 0.06 0.58 7.30 -39.41 -0.29 0.29 16 12 F -0.13 -1.43 17.18 2.25 0.04 -1.39 16 13 C 0.13 1.60 7.29 -38.89 -0.28 1.31 16 14 F -0.10 -1.60 15.46 2.25 0.03 -1.57 16 15 C -0.11 -1.72 1.97 -90.50 -0.18 -1.90 16 16 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 17 C -0.10 -1.59 4.85 -26.69 -0.13 -1.72 16 18 C -0.14 -2.57 6.08 -26.61 -0.16 -2.73 16 19 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16 20 N -0.59 -14.16 2.99 -172.32 -0.52 -14.68 16 21 C -0.25 -6.70 9.58 -15.06 -0.14 -6.84 16 22 H 0.06 1.64 7.89 -52.48 -0.41 1.22 16 23 C 0.00 0.10 4.90 -17.43 -0.09 0.01 16 24 N -0.90 -25.68 11.22 55.49 0.62 -25.06 16 25 Si 0.90 21.00 29.59 -169.99 -5.03 15.97 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 C 0.16 3.05 5.56 -3.71 -0.02 3.03 16 30 H 0.07 0.80 6.40 -51.93 -0.33 0.47 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.40 4.11 6.46 -40.82 -0.26 3.85 16 34 H 0.15 0.91 6.40 -52.49 -0.34 0.57 16 35 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 36 H 0.15 0.68 8.06 -52.48 -0.42 0.25 16 37 H 0.05 0.69 6.36 -51.93 -0.33 0.36 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.02 0.37 8.14 -51.92 -0.42 -0.06 16 45 H 0.05 0.95 7.45 -51.93 -0.39 0.56 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -32.13 368.68 -8.59 -40.72 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.13 Total: 0.86 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -3.00 Total: -1.94 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.14 Total: -48.87 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.07 Total: -2.95 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.13 -8.59 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025515750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.088 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds