Wall clock time and date at job start Tue Mar 31 2020 20:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47142 * 2 1 4 4 N 1.46502 * 109.47248 * 120.00343 * 2 1 3 5 5 C 1.34774 * 119.99521 * 274.99634 * 4 2 1 6 6 O 1.21566 * 120.00356 * 0.02562 * 5 4 2 7 7 C 1.47701 * 119.99489 * 180.02562 * 5 4 2 8 8 C 1.39684 * 120.15824 * 359.97438 * 7 5 4 9 9 C 1.37846 * 119.92792 * 180.02562 * 8 7 5 10 10 C 1.38451 * 120.23713 * 359.97438 * 9 8 7 11 11 C 1.38382 * 120.31906 * 0.02562 * 10 9 8 12 12 F 1.35099 * 119.96781 * 180.02562 * 11 10 9 13 13 C 1.38553 * 120.06816 * 359.72824 * 11 10 9 14 14 F 1.35095 * 120.11927 * 180.27585 * 13 11 10 15 15 C 1.52999 * 109.46641 * 239.99940 * 2 1 3 16 16 H 1.08997 * 109.50189 * 299.93977 * 15 2 1 17 17 C 1.53047 * 109.49853 * 60.00097 * 15 2 1 18 18 C 1.53035 * 109.53852 * 181.31325 * 17 15 2 19 19 C 1.53198 * 109.31692 * 298.63715 * 18 17 15 20 20 N 1.46922 * 108.77400 * 54.63105 * 19 18 17 21 21 C 1.36941 * 120.62777 * 126.37393 * 20 19 18 22 22 H 1.08007 * 119.99790 * 207.98476 * 21 20 19 23 23 C 1.38804 * 120.00077 * 27.98043 * 21 20 19 24 24 N 1.31620 * 119.99909 * 17.50728 * 23 21 20 25 25 Si 1.86803 * 120.00190 * 197.50219 * 23 21 20 26 26 H 1.48502 * 109.46934 * 94.07065 * 25 23 21 27 27 H 1.48507 * 109.47089 * 214.07101 * 25 23 21 28 28 H 1.48503 * 109.47071 * 334.07096 * 25 23 21 29 29 C 1.46928 * 118.74344 * 306.39769 * 20 19 18 30 30 H 1.09000 * 109.47215 * 59.99786 * 1 2 3 31 31 H 1.08997 * 109.47601 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46776 * 300.00003 * 1 2 3 33 33 H 0.96992 * 119.99849 * 94.99498 * 4 2 1 34 34 H 1.07999 * 120.03412 * 359.97438 * 8 7 5 35 35 H 1.07991 * 119.88169 * 179.97438 * 9 8 7 36 36 H 1.08007 * 119.84137 * 180.02562 * 10 9 8 37 37 H 1.08990 * 109.45830 * 301.33725 * 17 15 2 38 38 H 1.09004 * 109.45942 * 61.29396 * 17 15 2 39 39 H 1.09000 * 109.49606 * 58.58539 * 18 17 15 40 40 H 1.08999 * 109.50045 * 178.68541 * 18 17 15 41 41 H 1.08999 * 109.57996 * 294.85046 * 19 18 17 42 42 H 1.08999 * 109.58966 * 174.42598 * 19 18 17 43 43 H 0.97006 * 120.00194 * 179.97438 * 24 23 21 44 44 H 1.09007 * 109.58369 * 293.82213 * 29 20 19 45 45 H 1.08993 * 109.58965 * 173.39546 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0183 2.3570 6 8 1.8576 1.1611 2.4118 7 6 2.6401 -0.7145 3.5628 8 6 2.9732 -2.0698 3.5038 9 6 3.4322 -2.7149 4.6321 10 6 3.5651 -2.0243 5.8247 11 6 3.2380 -0.6815 5.8945 12 9 3.3709 -0.0144 7.0618 13 6 2.7802 -0.0190 4.7671 14 9 2.4659 1.2932 4.8327 15 6 2.0399 -0.7213 -1.2493 16 1 1.6777 -1.7493 -1.2492 17 6 1.5300 -0.0003 -2.4993 18 6 2.0124 -0.7398 -3.7492 19 6 3.5440 -0.7370 -3.7803 20 7 4.0437 -1.2971 -2.5173 21 6 4.9319 -2.3393 -2.5193 22 1 4.9574 -3.0288 -1.6883 23 6 5.7994 -2.5098 -3.5894 24 7 6.0210 -1.5147 -4.4219 25 14 6.6526 -4.1514 -3.8479 26 1 5.8590 -4.9783 -4.7922 27 1 8.0081 -3.9218 -4.4095 28 1 6.7688 -4.8590 -2.5475 29 6 3.5718 -0.7182 -1.2520 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6318 1.1525 34 1 2.8704 -2.6117 2.5753 35 1 3.6891 -3.7628 4.5857 36 1 3.9258 -2.5361 6.7048 37 1 0.4404 0.0205 -2.4874 38 1 1.9124 1.0204 -2.5111 39 1 1.6509 -1.7679 -3.7258 40 1 1.6296 -0.2393 -4.6386 41 1 3.9051 0.2850 -3.8950 42 1 3.8938 -1.3460 -4.6139 43 1 6.6276 -1.6337 -5.1695 44 1 3.9353 0.3054 -1.1605 45 1 3.9399 -1.3148 -0.4174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025515750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:51 Heat of formation + Delta-G solvation = -103.800242 kcal Electronic energy + Delta-G solvation = -29623.079339 eV Core-core repulsion = 25276.006832 eV Total energy + Delta-G solvation = -4347.072506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.57907 -49.65997 -41.38792 -39.80082 -39.02624 -36.74568 -34.75509 -33.16084 -32.32014 -31.67262 -31.29006 -29.83915 -27.13399 -25.91243 -24.61336 -23.78494 -23.59167 -22.27986 -21.60508 -20.75158 -19.49748 -18.67379 -18.43883 -18.23886 -17.51051 -17.39141 -16.94922 -16.74082 -16.20660 -15.92803 -15.88921 -15.79065 -15.46609 -15.37499 -15.09808 -14.94430 -14.67258 -14.13390 -14.05186 -14.01946 -13.70756 -13.31296 -13.11600 -13.05609 -12.98395 -12.82158 -12.75538 -12.58820 -12.26946 -12.18980 -11.92384 -11.75529 -11.49747 -11.31872 -11.11821 -10.94792 -10.51383 -10.35230 -10.03886 -9.88039 -8.66044 -7.84150 -5.30411 -0.55829 -0.17830 1.49861 1.51160 1.60116 1.62836 1.93218 2.46189 2.53536 2.68472 3.23843 3.30701 3.38004 3.53635 3.64975 3.73956 3.94303 4.00540 4.05184 4.09774 4.35500 4.40967 4.47993 4.53282 4.65944 4.67532 4.78295 4.82936 4.87048 4.88607 4.96009 4.98796 5.06023 5.10700 5.12444 5.24362 5.27493 5.34999 5.45597 5.51258 5.59536 5.61057 5.69505 5.79883 6.40130 6.44148 7.09350 7.16981 7.88323 8.41214 9.22319 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.003132 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.648189 B = 8936.936056 C =10545.665016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 H 0.062 0.938 4 N -0.699 5.699 5 C 0.554 3.446 6 O -0.572 6.572 7 C -0.161 4.161 8 C -0.057 4.057 9 C -0.088 4.088 10 C -0.084 4.084 11 C 0.041 3.959 12 F -0.137 7.137 13 C 0.088 3.912 14 F -0.133 7.133 15 C -0.092 4.092 16 H 0.087 0.913 17 C -0.099 4.099 18 C -0.129 4.129 19 C 0.172 3.828 20 N -0.608 5.608 21 C -0.259 4.259 22 H 0.076 0.924 23 C -0.054 4.054 24 N -0.939 5.939 25 Si 0.967 3.033 26 H -0.287 1.287 27 H -0.302 1.302 28 H -0.261 1.261 29 C 0.154 3.846 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.414 0.586 34 H 0.171 0.829 35 H 0.193 0.807 36 H 0.186 0.814 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.067 0.933 41 H -0.014 1.014 42 H 0.051 0.949 43 H 0.248 0.752 44 H -0.008 1.008 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.502 -6.314 17.538 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.050 3.950 3 H 0.080 0.920 4 N -0.350 5.350 5 C 0.341 3.659 6 O -0.452 6.452 7 C -0.165 4.165 8 C -0.076 4.076 9 C -0.106 4.106 10 C -0.102 4.102 11 C 0.021 3.979 12 F -0.115 7.115 13 C 0.067 3.933 14 F -0.112 7.112 15 C -0.113 4.113 16 H 0.105 0.895 17 C -0.137 4.137 18 C -0.168 4.168 19 C 0.046 3.954 20 N -0.331 5.331 21 C -0.390 4.390 22 H 0.094 0.906 23 C -0.249 4.249 24 N -0.585 5.585 25 Si 0.795 3.205 26 H -0.213 1.213 27 H -0.229 1.229 28 H -0.185 1.185 29 C 0.028 3.972 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.252 0.748 34 H 0.188 0.812 35 H 0.210 0.790 36 H 0.203 0.797 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.004 0.996 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.009 0.991 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.604 -5.403 17.474 21.142 hybrid contribution 1.030 0.163 -0.337 1.096 sum -9.574 -5.239 17.137 20.317 Atomic orbital electron populations 1.22132 0.93389 1.03240 1.02370 1.20937 0.95070 0.96113 0.82902 0.92011 1.45849 1.65989 1.14651 1.08560 1.18243 0.77692 0.86111 0.83824 1.90817 1.51753 1.17141 1.85535 1.19963 1.08005 0.96590 0.91930 1.21755 0.93758 0.90412 1.01647 1.21590 0.96481 1.02804 0.89721 1.21777 0.96716 0.89675 1.02066 1.17868 1.06836 0.92753 0.80416 1.91519 1.93967 1.80921 1.45137 1.18145 1.01995 0.78790 0.94392 1.91540 1.90187 1.32606 1.96820 1.21749 0.96041 1.00259 0.93237 0.89450 1.21451 1.00952 0.98044 0.93230 1.21993 0.96528 1.00326 0.97946 1.20633 0.91048 0.94565 0.89120 1.44322 1.49838 1.38002 1.00905 1.19605 1.10919 1.02603 1.05827 0.90647 1.25839 0.98485 1.00465 1.00099 1.70223 1.38935 1.31241 1.18149 0.85255 0.76844 0.79985 0.78388 1.21349 1.22893 1.18493 1.20982 0.92830 0.94768 0.88607 0.90036 0.90589 0.93666 0.74798 0.81213 0.78979 0.79717 0.89338 0.93546 0.92245 0.91440 0.99588 0.93021 0.94328 0.99051 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.13 71.98 0.66 -2.66 16 2 C 0.15 4.08 2.16 44.99 0.10 4.18 16 3 H 0.06 2.00 7.58 -2.39 -0.02 1.98 16 4 N -0.70 -16.64 4.43 -445.55 -1.97 -18.61 16 5 C 0.55 15.93 7.73 86.74 0.67 16.60 16 6 O -0.57 -21.68 15.00 -3.93 -0.06 -21.74 16 7 C -0.16 -3.69 5.88 -20.06 -0.12 -3.80 16 8 C -0.06 -0.75 9.54 22.53 0.21 -0.54 16 9 C -0.09 -0.71 10.03 22.23 0.22 -0.48 16 10 C -0.08 -0.90 10.01 22.35 0.22 -0.67 16 11 C 0.04 0.83 7.30 22.38 0.16 0.99 16 12 F -0.14 -3.09 17.18 44.97 0.77 -2.31 16 13 C 0.09 2.30 7.29 22.72 0.17 2.46 16 14 F -0.13 -4.47 15.46 44.97 0.70 -3.77 16 15 C -0.09 -2.70 1.97 -10.71 -0.02 -2.72 16 16 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 17 C -0.10 -2.90 4.85 30.62 0.15 -2.76 16 18 C -0.13 -4.50 6.08 30.67 0.19 -4.32 16 19 C 0.17 8.16 5.31 86.37 0.46 8.62 16 20 N -0.61 -29.24 2.99 -699.09 -2.09 -31.33 16 21 C -0.26 -13.54 9.58 84.03 0.81 -12.74 16 22 H 0.08 3.69 7.89 -2.91 -0.02 3.67 16 23 C -0.05 -2.92 4.90 84.86 0.42 -2.50 16 24 N -0.94 -55.27 11.22 21.65 0.24 -55.03 16 25 Si 0.97 43.12 29.59 68.60 2.03 45.15 16 26 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 27 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 29 C 0.15 6.01 5.56 86.36 0.48 6.49 16 30 H 0.08 1.59 6.40 -2.39 -0.02 1.58 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.41 7.37 6.46 -92.71 -0.60 6.77 16 34 H 0.17 1.35 6.40 -2.91 -0.02 1.33 16 35 H 0.19 -0.02 8.06 -2.92 -0.02 -0.04 16 36 H 0.19 0.71 8.06 -2.91 -0.02 0.68 16 37 H 0.09 2.02 6.36 -2.39 -0.02 2.01 16 38 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 41 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 42 H 0.05 2.79 6.06 -2.39 -0.01 2.77 16 43 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 44 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 45 H 0.06 2.16 7.45 -2.39 -0.02 2.14 16 Total: -1.00 -75.90 368.68 4.81 -71.08 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.43 Total: 10.43 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 4.77 Total: 6.15 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -3.82 Total: -104.97 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.06 Total: -21.74 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 1.47 Total: -6.09 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -75.90 4.81 -71.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025515750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.717 kcal (2) G-P(sol) polarization free energy of solvation -75.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds