Wall clock time and date at job start Tue Mar 31 2020 20:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47224 * 2 1 4 4 N 1.46493 * 109.47355 * 120.00398 * 2 1 3 5 5 C 1.34778 * 120.00048 * 275.00400 * 4 2 1 6 6 O 1.21590 * 119.99877 * 359.97438 * 5 4 2 7 7 C 1.47564 * 120.00375 * 180.02562 * 5 4 2 8 8 C 1.39743 * 120.14008 * 359.97438 * 7 5 4 9 9 C 1.37734 * 119.90459 * 180.02562 * 8 7 5 10 10 C 1.38762 * 120.19138 * 0.02562 * 9 8 7 11 11 F 1.35103 * 119.85468 * 179.97438 * 10 9 8 12 12 C 1.38488 * 120.28723 * 0.02562 * 10 9 8 13 13 C 1.38204 * 120.09450 * 359.66859 * 12 10 9 14 14 F 1.35093 * 120.09778 * 180.32173 * 13 12 10 15 15 C 1.53005 * 109.47050 * 240.00172 * 2 1 3 16 16 H 1.08992 * 109.52393 * 185.07599 * 15 2 1 17 17 C 1.53046 * 109.49589 * 64.99659 * 15 2 1 18 18 C 1.53045 * 109.53628 * 178.68286 * 17 15 2 19 19 C 1.53188 * 109.31036 * 61.36865 * 18 17 15 20 20 N 1.46924 * 108.77926 * 305.36450 * 19 18 17 21 21 C 1.36931 * 120.63196 * 233.58995 * 20 19 18 22 22 H 1.08002 * 119.99989 * 152.79584 * 21 20 19 23 23 C 1.38813 * 120.00014 * 332.79609 * 21 20 19 24 24 N 1.31620 * 120.00218 * 159.75605 * 23 21 20 25 25 Si 1.86795 * 119.99965 * 339.75368 * 23 21 20 26 26 H 1.48505 * 109.47045 * 94.89373 * 25 23 21 27 27 H 1.48495 * 109.47297 * 214.89273 * 25 23 21 28 28 H 1.48504 * 109.47023 * 334.89518 * 25 23 21 29 29 C 1.46926 * 118.73802 * 53.60663 * 20 19 18 30 30 H 1.09005 * 109.47118 * 59.99694 * 1 2 3 31 31 H 1.09000 * 109.47224 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47386 * 299.99964 * 1 2 3 33 33 H 0.96996 * 120.00463 * 94.99351 * 4 2 1 34 34 H 1.07997 * 120.04445 * 359.97438 * 8 7 5 35 35 H 1.08000 * 119.90629 * 180.02562 * 9 8 7 36 36 H 1.08001 * 119.95961 * 179.97438 * 12 10 9 37 37 H 1.09000 * 109.46111 * 298.70633 * 17 15 2 38 38 H 1.08999 * 109.45569 * 58.68204 * 17 15 2 39 39 H 1.08997 * 109.49285 * 181.31787 * 18 17 15 40 40 H 1.09000 * 109.49725 * 301.38517 * 18 17 15 41 41 H 1.09002 * 109.58890 * 65.15277 * 19 18 17 42 42 H 1.08996 * 109.58456 * 185.57665 * 19 18 17 43 43 H 0.96997 * 120.00164 * 180.02562 * 24 23 21 44 44 H 1.08997 * 109.58737 * 186.61103 * 29 20 19 45 45 H 1.08999 * 109.58824 * 66.18283 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1960 5 6 2.1470 -0.0184 2.3571 6 8 1.8582 1.1614 2.4117 7 6 2.6395 -0.7139 3.5618 8 6 2.9728 -2.0697 3.5023 9 6 3.4315 -2.7142 4.6298 10 6 3.5631 -2.0212 5.8248 11 9 4.0132 -2.6602 6.9268 12 6 3.2340 -0.6777 5.8930 13 6 2.7786 -0.0178 4.7673 14 9 2.4638 1.2944 4.8322 15 6 2.0400 -0.7212 -1.2493 16 1 3.1261 -0.8011 -1.2059 17 6 1.6353 0.0687 -2.4961 18 6 2.1732 -0.6345 -3.7445 19 6 1.5610 -2.0355 -3.8400 20 7 1.8217 -2.7522 -2.5842 21 6 2.4215 -3.9831 -2.5949 22 1 2.9976 -4.3106 -1.7421 23 6 2.2893 -4.8101 -3.7020 24 7 3.1507 -5.7849 -3.9020 25 14 0.8886 -4.5394 -4.9079 26 1 1.3617 -3.6956 -6.0347 27 1 0.4257 -5.8497 -5.4312 28 1 -0.2349 -3.8574 -4.2166 29 6 1.4263 -2.1233 -1.3166 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6318 1.1525 34 1 2.8701 -2.6115 2.5737 35 1 3.6895 -3.7619 4.5838 36 1 3.3381 -0.1436 6.8259 37 1 0.5483 0.1271 -2.5521 38 1 2.0506 1.0749 -2.4391 39 1 1.9046 -0.0590 -4.6303 40 1 3.2582 -0.7148 -3.6778 41 1 0.4856 -1.9545 -3.9979 42 1 2.0146 -2.5766 -4.6704 43 1 3.0584 -6.3625 -4.6758 44 1 1.7910 -2.7221 -0.4821 45 1 0.3398 -2.0493 -1.2687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025604960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:19 Heat of formation + Delta-G solvation = -78.684972 kcal Electronic energy + Delta-G solvation = -29544.740793 eV Core-core repulsion = 25198.757367 eV Total energy + Delta-G solvation = -4345.983427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.46784 -49.21374 -40.39630 -38.88660 -37.99503 -35.46372 -33.24553 -32.09809 -31.14000 -30.90760 -30.50434 -28.47787 -25.40010 -24.91981 -23.94043 -23.30090 -22.14575 -21.31375 -20.45748 -19.09785 -18.58997 -17.95169 -17.48387 -16.75804 -16.41020 -16.12000 -15.82775 -15.67553 -15.45320 -15.15802 -14.97712 -14.76432 -14.63836 -14.10151 -13.95998 -13.61446 -13.42819 -13.26144 -13.00499 -12.80096 -12.66721 -12.34264 -12.23210 -12.09729 -11.93320 -11.81364 -11.51742 -11.21492 -10.70222 -10.59161 -10.47827 -10.17931 -10.04020 -9.87888 -9.69434 -9.59539 -9.50343 -9.24675 -9.00665 -8.67208 -7.02666 -6.00950 -3.37092 0.14617 0.56664 2.42193 2.97131 3.27511 3.28401 3.38536 3.44765 3.46847 3.91653 4.08201 4.34757 4.40347 4.47807 4.65817 4.73833 5.01838 5.13915 5.20419 5.23461 5.29432 5.33358 5.45872 5.47718 5.50220 5.53121 5.57927 5.64084 5.77446 5.92786 5.98457 6.00971 6.10363 6.22099 6.23547 6.32170 6.34993 6.43858 6.52240 6.54465 6.65682 6.67439 6.92920 7.40441 7.88757 8.08399 8.25343 8.86941 9.65858 10.03764 11.14799 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.002967 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.486146 B = 9434.983944 C =10981.769301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 H 0.086 0.914 4 N -0.713 5.713 5 C 0.559 3.441 6 O -0.528 6.528 7 C -0.183 4.183 8 C -0.025 4.025 9 C -0.169 4.169 10 C 0.155 3.845 11 F -0.126 7.126 12 C -0.206 4.206 13 C 0.190 3.810 14 F -0.106 7.106 15 C -0.115 4.115 16 H 0.078 0.922 17 C -0.102 4.102 18 C -0.135 4.135 19 C 0.124 3.876 20 N -0.605 5.605 21 C -0.262 4.262 22 H 0.085 0.915 23 C 0.025 3.975 24 N -0.908 5.908 25 Si 0.883 3.117 26 H -0.289 1.289 27 H -0.304 1.304 28 H -0.270 1.270 29 C 0.153 3.847 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.402 0.598 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.026 0.974 42 H 0.070 0.930 43 H 0.263 0.737 44 H 0.055 0.945 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.251 9.838 15.906 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.046 3.954 3 H 0.104 0.896 4 N -0.365 5.365 5 C 0.345 3.655 6 O -0.406 6.406 7 C -0.187 4.187 8 C -0.044 4.044 9 C -0.188 4.188 10 C 0.135 3.865 11 F -0.105 7.105 12 C -0.225 4.225 13 C 0.169 3.831 14 F -0.084 7.084 15 C -0.136 4.136 16 H 0.096 0.904 17 C -0.140 4.140 18 C -0.174 4.174 19 C -0.001 4.001 20 N -0.328 5.328 21 C -0.391 4.391 22 H 0.102 0.898 23 C -0.175 4.175 24 N -0.551 5.551 25 Si 0.714 3.286 26 H -0.217 1.217 27 H -0.232 1.232 28 H -0.194 1.194 29 C 0.027 3.973 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.238 0.762 34 H 0.169 0.831 35 H 0.170 0.830 36 H 0.172 0.828 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.409 10.545 15.870 19.106 hybrid contribution -0.518 -0.383 -0.543 0.843 sum -1.927 10.161 15.327 18.490 Atomic orbital electron populations 1.22281 0.95254 1.02784 1.02159 1.21057 0.94251 0.96933 0.83128 0.89602 1.46068 1.66656 1.14355 1.09451 1.17833 0.78262 0.86532 0.82876 1.90839 1.49918 1.15043 1.84785 1.20211 1.08868 0.95337 0.94273 1.21178 0.92350 0.91955 0.98916 1.21200 1.04249 1.02154 0.91225 1.17522 0.95780 0.89840 0.83334 1.91563 1.85995 1.81511 1.51396 1.21012 1.07169 0.94356 0.99993 1.17251 0.94840 0.78733 0.92300 1.91631 1.89187 1.30927 1.96649 1.21970 1.01425 0.97637 0.92586 0.90363 1.21426 1.00622 0.97645 0.94271 1.22005 1.01264 0.97643 0.96499 1.21351 0.97052 0.91578 0.90124 1.44305 1.70620 1.18008 0.99888 1.18883 1.24781 0.90784 1.04610 0.89786 1.25256 0.98066 0.96016 0.98118 1.69827 1.34995 1.20942 1.29328 0.86936 0.84746 0.75795 0.81107 1.21711 1.23231 1.19450 1.21029 0.96381 0.90561 0.89321 0.91305 0.91538 0.92634 0.76167 0.83103 0.83008 0.82769 0.92053 0.92795 0.92698 0.91751 0.95661 0.91147 0.92739 0.92607 0.95110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 8.76 37.16 0.33 -1.73 16 2 C 0.15 1.94 2.35 -67.93 -0.16 1.78 16 3 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 4 N -0.71 -8.55 4.96 -54.84 -0.27 -8.82 16 5 C 0.56 7.42 7.73 -12.46 -0.10 7.33 16 6 O -0.53 -8.81 15.00 5.29 0.08 -8.73 16 7 C -0.18 -2.00 5.88 -104.91 -0.62 -2.61 16 8 C -0.03 -0.21 9.53 -39.20 -0.37 -0.59 16 9 C -0.17 -1.29 10.01 -39.57 -0.40 -1.68 16 10 C 0.16 1.30 7.30 -39.30 -0.29 1.01 16 11 F -0.13 -1.10 17.26 2.25 0.04 -1.06 16 12 C -0.21 -1.78 9.99 -39.50 -0.39 -2.18 16 13 C 0.19 2.08 7.28 -38.97 -0.28 1.80 16 14 F -0.11 -1.39 15.55 2.25 0.04 -1.36 16 15 C -0.12 -1.68 2.27 -90.49 -0.21 -1.88 16 16 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 17 C -0.10 -1.45 4.89 -26.68 -0.13 -1.58 16 18 C -0.13 -2.24 6.08 -26.61 -0.16 -2.41 16 19 C 0.12 2.58 4.19 -3.71 -0.02 2.56 16 20 N -0.60 -13.34 2.77 -172.32 -0.48 -13.82 16 21 C -0.26 -6.91 10.04 -15.06 -0.15 -7.06 16 22 H 0.08 2.33 8.05 -52.49 -0.42 1.91 16 23 C 0.02 0.68 5.24 -17.43 -0.09 0.59 16 24 N -0.91 -26.95 13.97 55.49 0.78 -26.17 16 25 Si 0.88 21.72 24.35 -169.99 -4.14 17.59 16 26 H -0.29 -6.92 6.70 56.52 0.38 -6.54 16 27 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 28 H -0.27 -6.47 6.45 56.52 0.36 -6.11 16 29 C 0.15 2.65 5.26 -3.71 -0.02 2.63 16 30 H 0.07 0.80 6.60 -51.93 -0.34 0.46 16 31 H 0.07 0.83 6.23 -51.93 -0.32 0.50 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.40 4.19 5.31 -40.82 -0.22 3.97 16 34 H 0.15 1.01 6.40 -52.49 -0.34 0.67 16 35 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.06 0.84 6.63 -51.93 -0.34 0.50 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.03 0.52 6.98 -51.93 -0.36 0.16 16 42 H 0.07 1.62 4.50 -51.93 -0.23 1.39 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.06 0.91 6.75 -51.93 -0.35 0.56 16 45 H 0.03 0.53 6.06 -51.93 -0.31 0.21 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -31.78 357.14 -7.43 -39.21 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.79 Total: 1.81 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -3.06 Total: -4.03 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.02 Total: -48.82 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.08 Total: -8.73 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.07 Total: -2.42 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.14 Total: 17.59 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.78 -7.43 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025604960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.472 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds