Wall clock time and date at job start Tue Mar 31 2020 20:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47224 * 2 1 4 4 N 1.46493 * 109.47355 * 120.00398 * 2 1 3 5 5 C 1.34778 * 120.00048 * 275.00400 * 4 2 1 6 6 O 1.21590 * 119.99877 * 359.97438 * 5 4 2 7 7 C 1.47564 * 120.00375 * 180.02562 * 5 4 2 8 8 C 1.39743 * 120.14008 * 359.97438 * 7 5 4 9 9 C 1.37734 * 119.90459 * 180.02562 * 8 7 5 10 10 C 1.38762 * 120.19138 * 0.02562 * 9 8 7 11 11 F 1.35103 * 119.85468 * 179.97438 * 10 9 8 12 12 C 1.38488 * 120.28723 * 0.02562 * 10 9 8 13 13 C 1.38204 * 120.09450 * 359.66859 * 12 10 9 14 14 F 1.35093 * 120.09778 * 180.32173 * 13 12 10 15 15 C 1.53005 * 109.47050 * 240.00172 * 2 1 3 16 16 H 1.08992 * 109.52393 * 185.07599 * 15 2 1 17 17 C 1.53046 * 109.49589 * 64.99659 * 15 2 1 18 18 C 1.53045 * 109.53628 * 178.68286 * 17 15 2 19 19 C 1.53188 * 109.31036 * 61.36865 * 18 17 15 20 20 N 1.46924 * 108.77926 * 305.36450 * 19 18 17 21 21 C 1.36931 * 120.63196 * 233.58995 * 20 19 18 22 22 H 1.08002 * 119.99989 * 152.79584 * 21 20 19 23 23 C 1.38813 * 120.00014 * 332.79609 * 21 20 19 24 24 N 1.31620 * 120.00218 * 159.75605 * 23 21 20 25 25 Si 1.86795 * 119.99965 * 339.75368 * 23 21 20 26 26 H 1.48505 * 109.47045 * 94.89373 * 25 23 21 27 27 H 1.48495 * 109.47297 * 214.89273 * 25 23 21 28 28 H 1.48504 * 109.47023 * 334.89518 * 25 23 21 29 29 C 1.46926 * 118.73802 * 53.60663 * 20 19 18 30 30 H 1.09005 * 109.47118 * 59.99694 * 1 2 3 31 31 H 1.09000 * 109.47224 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47386 * 299.99964 * 1 2 3 33 33 H 0.96996 * 120.00463 * 94.99351 * 4 2 1 34 34 H 1.07997 * 120.04445 * 359.97438 * 8 7 5 35 35 H 1.08000 * 119.90629 * 180.02562 * 9 8 7 36 36 H 1.08001 * 119.95961 * 179.97438 * 12 10 9 37 37 H 1.09000 * 109.46111 * 298.70633 * 17 15 2 38 38 H 1.08999 * 109.45569 * 58.68204 * 17 15 2 39 39 H 1.08997 * 109.49285 * 181.31787 * 18 17 15 40 40 H 1.09000 * 109.49725 * 301.38517 * 18 17 15 41 41 H 1.09002 * 109.58890 * 65.15277 * 19 18 17 42 42 H 1.08996 * 109.58456 * 185.57665 * 19 18 17 43 43 H 0.96997 * 120.00164 * 180.02562 * 24 23 21 44 44 H 1.08997 * 109.58737 * 186.61103 * 29 20 19 45 45 H 1.08999 * 109.58824 * 66.18283 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1960 5 6 2.1470 -0.0184 2.3571 6 8 1.8582 1.1614 2.4117 7 6 2.6395 -0.7139 3.5618 8 6 2.9728 -2.0697 3.5023 9 6 3.4315 -2.7142 4.6298 10 6 3.5631 -2.0212 5.8248 11 9 4.0132 -2.6602 6.9268 12 6 3.2340 -0.6777 5.8930 13 6 2.7786 -0.0178 4.7673 14 9 2.4638 1.2944 4.8322 15 6 2.0400 -0.7212 -1.2493 16 1 3.1261 -0.8011 -1.2059 17 6 1.6353 0.0687 -2.4961 18 6 2.1732 -0.6345 -3.7445 19 6 1.5610 -2.0355 -3.8400 20 7 1.8217 -2.7522 -2.5842 21 6 2.4215 -3.9831 -2.5949 22 1 2.9976 -4.3106 -1.7421 23 6 2.2893 -4.8101 -3.7020 24 7 3.1507 -5.7849 -3.9020 25 14 0.8886 -4.5394 -4.9079 26 1 1.3617 -3.6956 -6.0347 27 1 0.4257 -5.8497 -5.4312 28 1 -0.2349 -3.8574 -4.2166 29 6 1.4263 -2.1233 -1.3166 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6318 1.1525 34 1 2.8701 -2.6115 2.5737 35 1 3.6895 -3.7619 4.5838 36 1 3.3381 -0.1436 6.8259 37 1 0.5483 0.1271 -2.5521 38 1 2.0506 1.0749 -2.4391 39 1 1.9046 -0.0590 -4.6303 40 1 3.2582 -0.7148 -3.6778 41 1 0.4856 -1.9545 -3.9979 42 1 2.0146 -2.5766 -4.6704 43 1 3.0584 -6.3625 -4.6758 44 1 1.7910 -2.7221 -0.4821 45 1 0.3398 -2.0493 -1.2687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025604960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:18 Heat of formation + Delta-G solvation = -97.999307 kcal Electronic energy + Delta-G solvation = -29545.578326 eV Core-core repulsion = 25198.757367 eV Total energy + Delta-G solvation = -4346.820959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.15368 -50.09587 -41.39869 -39.96465 -39.06847 -36.80552 -34.76855 -33.34054 -32.59612 -31.90311 -31.47078 -29.65479 -27.15768 -25.94635 -24.87547 -24.14731 -23.70381 -22.58920 -21.51253 -20.32812 -19.44279 -18.90689 -18.60158 -18.24344 -17.24467 -17.20130 -17.01285 -16.70959 -16.47738 -16.23937 -16.11186 -15.75985 -15.55062 -15.50917 -15.07666 -15.00368 -14.75736 -14.52485 -14.18013 -13.98614 -13.83895 -13.55556 -13.50509 -13.18649 -13.03845 -12.92569 -12.78325 -12.59169 -12.25562 -12.06371 -11.88799 -11.61156 -11.43805 -11.36393 -11.21780 -11.01672 -10.62829 -10.32611 -10.17665 -9.86998 -8.86594 -8.12653 -5.43114 -0.62404 -0.12491 1.32980 1.44235 1.52223 1.56912 2.01194 2.42877 2.45286 2.66010 3.09111 3.17992 3.34342 3.41774 3.51394 3.75868 3.83521 3.94404 3.96744 4.02034 4.25114 4.30484 4.42295 4.53551 4.56471 4.58580 4.60859 4.72910 4.75651 4.80429 4.88354 4.89218 4.92248 4.99790 5.02290 5.13023 5.14304 5.27248 5.29156 5.40111 5.47372 5.54823 5.62463 5.90687 6.16917 6.42652 6.96039 7.09060 7.67287 8.08397 9.06842 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.002967 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.486146 B = 9434.983944 C =10981.769301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.158 3.842 3 H 0.081 0.919 4 N -0.707 5.707 5 C 0.558 3.442 6 O -0.568 6.568 7 C -0.197 4.197 8 C -0.019 4.019 9 C -0.159 4.159 10 C 0.157 3.843 11 F -0.126 7.126 12 C -0.198 4.198 13 C 0.169 3.831 14 F -0.125 7.125 15 C -0.101 4.101 16 H 0.066 0.934 17 C -0.100 4.100 18 C -0.128 4.128 19 C 0.116 3.884 20 N -0.619 5.619 21 C -0.242 4.242 22 H 0.060 0.940 23 C -0.035 4.035 24 N -0.958 5.958 25 Si 0.942 3.058 26 H -0.282 1.282 27 H -0.316 1.316 28 H -0.257 1.257 29 C 0.149 3.851 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.410 0.590 34 H 0.168 0.832 35 H 0.177 0.823 36 H 0.172 0.828 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.034 0.966 42 H 0.043 0.957 43 H 0.259 0.741 44 H 0.060 0.940 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.145 10.765 16.495 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.054 3.946 3 H 0.099 0.901 4 N -0.359 5.359 5 C 0.346 3.654 6 O -0.448 6.448 7 C -0.201 4.201 8 C -0.038 4.038 9 C -0.178 4.178 10 C 0.137 3.863 11 F -0.104 7.104 12 C -0.217 4.217 13 C 0.148 3.852 14 F -0.103 7.103 15 C -0.122 4.122 16 H 0.085 0.915 17 C -0.138 4.138 18 C -0.167 4.167 19 C -0.009 4.009 20 N -0.343 5.343 21 C -0.372 4.372 22 H 0.078 0.922 23 C -0.229 4.229 24 N -0.604 5.604 25 Si 0.772 3.228 26 H -0.209 1.209 27 H -0.246 1.246 28 H -0.181 1.181 29 C 0.024 3.976 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.248 0.752 34 H 0.186 0.814 35 H 0.194 0.806 36 H 0.189 0.811 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.321 11.502 16.473 20.225 hybrid contribution -0.177 -0.678 -0.609 0.928 sum -2.498 10.824 15.864 19.367 Atomic orbital electron populations 1.22235 0.94437 1.02827 1.02438 1.20917 0.94729 0.96398 0.82591 0.90102 1.46012 1.66179 1.14657 1.09028 1.18151 0.77538 0.86123 0.83573 1.90814 1.51799 1.16742 1.85438 1.20141 1.10227 0.96335 0.93372 1.21338 0.91644 0.90860 0.99954 1.21469 1.02715 1.03170 0.90397 1.17601 0.95439 0.89714 0.83577 1.91572 1.85939 1.81431 1.51475 1.21123 1.06066 0.94574 0.99934 1.17490 0.96266 0.78261 0.93199 1.91580 1.89649 1.32275 1.96781 1.21767 1.00454 0.96128 0.93820 0.91547 1.21449 1.01496 0.98305 0.92515 1.21914 1.00220 0.95599 0.98962 1.21426 0.97505 0.93365 0.88582 1.44457 1.70710 1.17007 1.02113 1.18908 1.23058 0.92095 1.03134 0.92213 1.25834 1.00187 0.96454 1.00458 1.69952 1.37071 1.22882 1.30530 0.85985 0.82250 0.75073 0.79517 1.20884 1.24581 1.18139 1.21237 0.97209 0.91777 0.87343 0.90127 0.91500 0.93317 0.75226 0.81439 0.80588 0.81086 0.90739 0.90470 0.90183 0.93026 0.94844 0.93844 0.93177 0.92154 0.93870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 8.76 71.98 0.63 -2.95 16 2 C 0.16 3.76 2.35 44.99 0.11 3.86 16 3 H 0.08 2.08 7.58 -2.39 -0.02 2.07 16 4 N -0.71 -15.93 4.96 -445.68 -2.21 -18.14 16 5 C 0.56 14.47 7.73 86.70 0.67 15.14 16 6 O -0.57 -18.91 15.00 -4.00 -0.06 -18.97 16 7 C -0.20 -4.12 5.88 -20.05 -0.12 -4.24 16 8 C -0.02 -0.29 9.53 22.51 0.21 -0.07 16 9 C -0.16 -2.00 10.01 22.28 0.22 -1.78 16 10 C 0.16 2.28 7.30 22.45 0.16 2.44 16 11 F -0.13 -1.90 17.26 44.97 0.78 -1.13 16 12 C -0.20 -3.15 9.99 22.32 0.22 -2.93 16 13 C 0.17 3.62 7.28 22.67 0.17 3.78 16 14 F -0.12 -3.32 15.55 44.97 0.70 -2.62 16 15 C -0.10 -2.70 2.27 -10.71 -0.02 -2.72 16 16 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 17 C -0.10 -2.50 4.89 30.62 0.15 -2.35 16 18 C -0.13 -3.91 6.08 30.67 0.19 -3.72 16 19 C 0.12 4.57 4.19 86.36 0.36 4.93 16 20 N -0.62 -26.45 2.77 -699.11 -1.94 -28.39 16 21 C -0.24 -12.79 10.04 84.03 0.84 -11.95 16 22 H 0.06 3.38 8.05 -2.91 -0.02 3.36 16 23 C -0.03 -1.95 5.24 84.86 0.44 -1.50 16 24 N -0.96 -58.31 13.97 21.65 0.30 -58.00 16 25 Si 0.94 45.07 24.35 68.60 1.67 46.74 16 26 H -0.28 -12.95 6.70 99.48 0.67 -12.29 16 27 H -0.32 -15.63 7.11 99.48 0.71 -14.92 16 28 H -0.26 -11.60 6.45 99.48 0.64 -10.95 16 29 C 0.15 4.83 5.26 86.36 0.45 5.28 16 30 H 0.08 1.60 6.60 -2.38 -0.02 1.59 16 31 H 0.07 1.48 6.23 -2.39 -0.01 1.46 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.41 7.82 5.31 -92.71 -0.49 7.33 16 34 H 0.17 1.84 6.40 -2.91 -0.02 1.82 16 35 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 37 H 0.07 1.72 6.63 -2.39 -0.02 1.70 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.03 1.27 6.98 -2.39 -0.02 1.26 16 42 H 0.04 1.95 4.50 -2.39 -0.01 1.94 16 43 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 44 H 0.06 1.87 6.75 -2.39 -0.02 1.86 16 45 H 0.04 1.34 6.06 -2.39 -0.01 1.32 16 Total: -1.00 -69.95 357.14 4.38 -65.57 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.44 Total: 13.73 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 4.69 Total: 1.22 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -3.85 Total: -104.53 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.06 Total: -18.97 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 1.48 Total: -3.75 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.67 Total: 46.74 kcal Total: -69.95 4.38 -65.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025604960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.426 kcal (2) G-P(sol) polarization free energy of solvation -69.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds