Wall clock time and date at job start Tue Mar 31 2020 20:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46731 * 2 1 4 4 N 1.46503 * 109.46765 * 119.99895 * 2 1 3 5 5 C 1.34774 * 120.00225 * 275.27552 * 4 2 1 6 6 O 1.21591 * 119.99479 * 359.72788 * 5 4 2 7 7 C 1.47541 * 120.00082 * 179.72895 * 5 4 2 8 8 C 1.39903 * 120.18849 * 89.71998 * 7 5 4 9 9 F 1.35101 * 120.09544 * 0.02562 * 8 7 5 10 10 C 1.38225 * 119.79991 * 179.79146 * 8 7 5 11 11 C 1.38303 * 120.19238 * 0.48500 * 10 8 7 12 12 C 1.38303 * 120.38222 * 359.74653 * 11 10 8 13 13 C 1.38220 * 120.19299 * 0.02562 * 12 11 10 14 14 F 1.35101 * 120.09654 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47215 * 239.99985 * 2 1 3 16 16 H 1.08999 * 109.49661 * 184.93704 * 15 2 1 17 17 C 1.53044 * 109.49716 * 64.84108 * 15 2 1 18 18 C 1.53040 * 109.53744 * 178.68650 * 17 15 2 19 19 C 1.53190 * 109.31709 * 61.36101 * 18 17 15 20 20 N 1.46921 * 108.77507 * 305.36785 * 19 18 17 21 21 C 1.36940 * 120.63102 * 233.58361 * 20 19 18 22 22 H 1.08008 * 120.00090 * 151.84866 * 21 20 19 23 23 C 1.38808 * 119.99968 * 331.85062 * 21 20 19 24 24 N 1.31616 * 119.99935 * 343.06329 * 23 21 20 25 25 Si 1.86801 * 120.00071 * 163.06170 * 23 21 20 26 26 H 1.48498 * 109.47301 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46971 * 119.99757 * 25 23 21 28 28 H 1.48497 * 109.47213 * 240.00076 * 25 23 21 29 29 C 1.46931 * 118.74267 * 53.60533 * 20 19 18 30 30 H 1.08994 * 109.47302 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47196 * 300.00417 * 1 2 3 32 32 H 1.09002 * 109.46599 * 59.99860 * 1 2 3 33 33 H 0.97003 * 119.99796 * 95.00650 * 4 2 1 34 34 H 1.08001 * 119.89922 * 180.21655 * 10 8 7 35 35 H 1.07999 * 119.80536 * 179.72109 * 11 10 8 36 36 H 1.08007 * 119.89993 * 179.97438 * 12 11 10 37 37 H 1.09003 * 109.45808 * 298.70032 * 17 15 2 38 38 H 1.08998 * 109.46437 * 58.66153 * 17 15 2 39 39 H 1.09002 * 109.49339 * 301.41188 * 18 17 15 40 40 H 1.08995 * 109.52437 * 181.33253 * 18 17 15 41 41 H 1.09002 * 109.58968 * 185.57783 * 19 18 17 42 42 H 1.08999 * 109.58591 * 65.15412 * 19 18 17 43 43 H 0.97008 * 120.00053 * 179.97438 * 24 23 21 44 44 H 1.08996 * 109.59037 * 186.60423 * 29 20 19 45 45 H 1.08998 * 109.58417 * 66.17675 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1417 -0.0197 2.3586 6 8 1.8525 1.1601 2.4131 7 6 2.6278 -0.7167 3.5647 8 6 3.9972 -0.7619 3.8473 9 9 4.8804 -0.1664 3.0163 10 6 4.4434 -1.4134 4.9818 11 6 3.5413 -2.0280 5.8310 12 6 2.1862 -1.9923 5.5566 13 6 1.7222 -1.3412 4.4291 14 9 0.3982 -1.3080 4.1627 15 6 2.0401 -0.7212 -1.2492 16 1 3.1264 -0.7987 -1.2065 17 6 1.6321 0.0666 -2.4962 18 6 2.1698 -0.6366 -3.7446 19 6 1.5609 -2.0392 -3.8380 20 7 1.8249 -2.7540 -2.5819 21 6 2.4275 -3.9836 -2.5922 22 1 3.0181 -4.3027 -1.7460 23 6 2.2794 -4.8199 -3.6901 24 7 1.3173 -4.5989 -4.5607 25 14 3.4455 -6.2591 -3.9321 26 1 4.4313 -6.2895 -2.8219 27 1 2.6721 -7.5267 -3.9414 28 1 4.1599 -6.1054 -5.2248 29 6 1.4296 -2.1247 -1.3143 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 2.2491 -1.6318 1.1526 34 1 5.4999 -1.4462 5.2033 35 1 3.8971 -2.5391 6.7134 36 1 1.4886 -2.4752 6.2250 37 1 0.5449 0.1224 -2.5509 38 1 2.0448 1.0739 -2.4407 39 1 3.2551 -0.7149 -3.6789 40 1 1.8994 -0.0628 -4.6309 41 1 2.0146 -2.5800 -4.6686 42 1 0.4851 -1.9607 -3.9947 43 1 1.2141 -5.1832 -5.3281 44 1 1.7967 -2.7220 -0.4797 45 1 0.3431 -2.0532 -1.2652 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025606793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:34 Heat of formation + Delta-G solvation = -85.077122 kcal Electronic energy + Delta-G solvation = -29966.247031 eV Core-core repulsion = 25619.986420 eV Total energy + Delta-G solvation = -4346.260611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.35548 -49.33431 -40.19039 -38.84703 -37.88146 -35.22079 -33.11871 -32.01444 -30.79128 -30.57945 -30.46451 -28.08489 -25.31982 -25.01725 -23.50944 -23.23865 -22.21120 -21.02706 -20.26387 -18.85849 -18.51299 -17.81011 -17.64746 -16.69382 -16.51614 -16.00583 -15.86178 -15.62193 -15.55594 -14.90897 -14.76370 -14.72535 -14.30931 -14.10628 -13.81728 -13.46544 -13.17202 -13.08761 -12.60324 -12.47159 -12.36227 -12.30003 -12.28776 -12.18329 -11.81267 -11.63971 -11.01993 -10.93929 -10.60134 -10.47791 -10.23682 -10.17915 -10.02857 -9.87954 -9.62606 -9.47109 -9.40084 -9.20254 -9.00842 -8.48255 -6.67664 -5.80879 -3.23732 0.37001 0.53659 2.37007 2.81817 3.08147 3.34815 3.38818 3.42945 3.44596 3.94984 4.19898 4.40831 4.43837 4.47120 4.65969 5.01692 5.20767 5.23758 5.32051 5.38327 5.41048 5.44870 5.53593 5.56819 5.67907 5.68288 5.70354 5.85328 5.99800 6.11876 6.21862 6.24481 6.25028 6.32690 6.47129 6.56739 6.60116 6.69966 6.76813 6.86367 6.97279 7.39203 7.44549 7.66276 7.77086 8.07577 8.42733 9.19084 9.82539 10.39421 11.27275 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012011 B = 0.003365 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.699162 B = 8318.578264 C = 9377.204954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.148 3.852 3 H 0.084 0.916 4 N -0.704 5.704 5 C 0.566 3.434 6 O -0.526 6.526 7 C -0.198 4.198 8 C 0.164 3.836 9 F -0.120 7.120 10 C -0.166 4.166 11 C -0.046 4.046 12 C -0.166 4.166 13 C 0.164 3.836 14 F -0.120 7.120 15 C -0.113 4.113 16 H 0.073 0.927 17 C -0.100 4.100 18 C -0.142 4.142 19 C 0.170 3.830 20 N -0.591 5.591 21 C -0.254 4.254 22 H 0.064 0.936 23 C 0.004 3.996 24 N -0.901 5.901 25 Si 0.900 3.100 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.289 1.289 29 C 0.151 3.849 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.405 0.595 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.018 0.982 43 H 0.253 0.747 44 H 0.046 0.954 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 6.678 18.845 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.102 0.898 4 N -0.355 5.355 5 C 0.349 3.651 6 O -0.402 6.402 7 C -0.203 4.203 8 C 0.144 3.856 9 F -0.098 7.098 10 C -0.185 4.185 11 C -0.065 4.065 12 C -0.185 4.185 13 C 0.144 3.856 14 F -0.098 7.098 15 C -0.134 4.134 16 H 0.091 0.909 17 C -0.138 4.138 18 C -0.182 4.182 19 C 0.044 3.956 20 N -0.313 5.313 21 C -0.383 4.383 22 H 0.082 0.918 23 C -0.195 4.195 24 N -0.545 5.545 25 Si 0.730 3.270 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.215 1.215 29 C 0.024 3.976 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.240 0.760 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.036 0.964 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.963 7.438 18.649 20.295 hybrid contribution 0.604 -1.123 -0.418 1.342 sum 3.566 6.315 18.231 19.620 Atomic orbital electron populations 1.22263 0.95101 1.02922 1.02044 1.21136 0.94407 0.96809 0.83216 0.89804 1.46196 1.65574 1.14498 1.09188 1.17715 0.78078 0.86560 0.82740 1.90814 1.49596 1.15042 1.84750 1.20028 0.93107 1.06962 1.00189 1.17334 0.84671 0.94204 0.89403 1.91595 1.67038 1.80893 1.70257 1.21197 1.02133 1.00943 0.94200 1.20999 0.91478 0.95481 0.98498 1.21194 0.97355 1.02647 0.97286 1.17321 0.77495 0.96657 0.94122 1.91593 1.30420 1.94208 1.93555 1.21963 1.00994 0.98070 0.92348 0.90873 1.21418 1.00550 0.97221 0.94615 1.22179 1.00618 0.99592 0.95762 1.20788 0.96605 0.88004 0.90169 1.44025 1.69770 1.17624 0.99893 1.19196 1.23244 0.92084 1.03788 0.91797 1.25028 0.97365 0.97616 0.99491 1.70046 1.30165 1.39505 1.14788 0.86258 0.80660 0.82263 0.77797 1.20294 1.21725 1.21539 1.20997 0.96230 0.90292 0.90049 0.91430 0.92822 0.91174 0.75965 0.83284 0.83358 0.83277 0.92180 0.93483 0.92798 0.93182 0.89603 0.96434 0.93683 0.93555 0.95562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 8.76 37.16 0.33 -2.09 16 2 C 0.15 2.26 2.35 -67.93 -0.16 2.10 16 3 H 0.08 1.34 7.58 -51.93 -0.39 0.94 16 4 N -0.70 -10.30 5.01 -54.84 -0.27 -10.58 16 5 C 0.57 8.74 6.50 -12.47 -0.08 8.66 16 6 O -0.53 -9.77 16.77 5.29 0.09 -9.68 16 7 C -0.20 -2.51 5.64 -104.86 -0.59 -3.10 16 8 C 0.16 1.83 7.29 -38.96 -0.28 1.54 16 9 F -0.12 -1.54 16.83 2.25 0.04 -1.50 16 10 C -0.17 -1.25 10.01 -39.56 -0.40 -1.65 16 11 C -0.05 -0.27 10.03 -39.53 -0.40 -0.67 16 12 C -0.17 -1.24 10.01 -39.56 -0.40 -1.63 16 13 C 0.16 1.81 7.29 -38.97 -0.28 1.53 16 14 F -0.12 -1.50 16.83 2.25 0.04 -1.47 16 15 C -0.11 -1.90 2.27 -90.50 -0.21 -2.11 16 16 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 17 C -0.10 -1.66 4.89 -26.69 -0.13 -1.79 16 18 C -0.14 -2.69 6.08 -26.61 -0.16 -2.85 16 19 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 20 N -0.59 -14.39 2.99 -172.32 -0.52 -14.90 16 21 C -0.25 -6.80 9.58 -15.06 -0.14 -6.95 16 22 H 0.06 1.68 7.89 -52.48 -0.41 1.27 16 23 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 24 N -0.90 -25.81 11.20 55.49 0.62 -25.19 16 25 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 29 C 0.15 3.00 5.26 -3.71 -0.02 2.98 16 30 H 0.07 1.01 6.23 -51.93 -0.32 0.69 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.97 6.59 -51.93 -0.34 0.62 16 33 H 0.40 5.53 7.26 -40.82 -0.30 5.23 16 34 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.15 0.37 8.06 -52.49 -0.42 -0.06 16 36 H 0.15 0.75 8.06 -52.48 -0.42 0.32 16 37 H 0.06 0.98 6.63 -51.93 -0.34 0.64 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.05 0.89 6.75 -51.93 -0.35 0.54 16 45 H 0.03 0.54 6.06 -51.93 -0.31 0.22 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -32.00 369.09 -8.54 -40.53 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.03 Total: 2.91 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -3.03 Total: -2.04 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.17 Total: -50.67 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.08 Total: -2.96 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.00 -8.54 -40.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025606793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.545 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds