Wall clock time and date at job start Tue Mar 31 2020 20:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46731 * 2 1 4 4 N 1.46503 * 109.46765 * 119.99895 * 2 1 3 5 5 C 1.34774 * 120.00225 * 275.27552 * 4 2 1 6 6 O 1.21591 * 119.99479 * 359.72788 * 5 4 2 7 7 C 1.47541 * 120.00082 * 179.72895 * 5 4 2 8 8 C 1.39903 * 120.18849 * 89.71998 * 7 5 4 9 9 F 1.35101 * 120.09544 * 0.02562 * 8 7 5 10 10 C 1.38225 * 119.79991 * 179.79146 * 8 7 5 11 11 C 1.38303 * 120.19238 * 0.48500 * 10 8 7 12 12 C 1.38303 * 120.38222 * 359.74653 * 11 10 8 13 13 C 1.38220 * 120.19299 * 0.02562 * 12 11 10 14 14 F 1.35101 * 120.09654 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47215 * 239.99985 * 2 1 3 16 16 H 1.08999 * 109.49661 * 184.93704 * 15 2 1 17 17 C 1.53044 * 109.49716 * 64.84108 * 15 2 1 18 18 C 1.53040 * 109.53744 * 178.68650 * 17 15 2 19 19 C 1.53190 * 109.31709 * 61.36101 * 18 17 15 20 20 N 1.46921 * 108.77507 * 305.36785 * 19 18 17 21 21 C 1.36940 * 120.63102 * 233.58361 * 20 19 18 22 22 H 1.08008 * 120.00090 * 151.84866 * 21 20 19 23 23 C 1.38808 * 119.99968 * 331.85062 * 21 20 19 24 24 N 1.31616 * 119.99935 * 343.06329 * 23 21 20 25 25 Si 1.86801 * 120.00071 * 163.06170 * 23 21 20 26 26 H 1.48498 * 109.47301 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46971 * 119.99757 * 25 23 21 28 28 H 1.48497 * 109.47213 * 240.00076 * 25 23 21 29 29 C 1.46931 * 118.74267 * 53.60533 * 20 19 18 30 30 H 1.08994 * 109.47302 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47196 * 300.00417 * 1 2 3 32 32 H 1.09002 * 109.46599 * 59.99860 * 1 2 3 33 33 H 0.97003 * 119.99796 * 95.00650 * 4 2 1 34 34 H 1.08001 * 119.89922 * 180.21655 * 10 8 7 35 35 H 1.07999 * 119.80536 * 179.72109 * 11 10 8 36 36 H 1.08007 * 119.89993 * 179.97438 * 12 11 10 37 37 H 1.09003 * 109.45808 * 298.70032 * 17 15 2 38 38 H 1.08998 * 109.46437 * 58.66153 * 17 15 2 39 39 H 1.09002 * 109.49339 * 301.41188 * 18 17 15 40 40 H 1.08995 * 109.52437 * 181.33253 * 18 17 15 41 41 H 1.09002 * 109.58968 * 185.57783 * 19 18 17 42 42 H 1.08999 * 109.58591 * 65.15412 * 19 18 17 43 43 H 0.97008 * 120.00053 * 179.97438 * 24 23 21 44 44 H 1.08996 * 109.59037 * 186.60423 * 29 20 19 45 45 H 1.08998 * 109.58417 * 66.17675 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1417 -0.0197 2.3586 6 8 1.8525 1.1601 2.4131 7 6 2.6278 -0.7167 3.5647 8 6 3.9972 -0.7619 3.8473 9 9 4.8804 -0.1664 3.0163 10 6 4.4434 -1.4134 4.9818 11 6 3.5413 -2.0280 5.8310 12 6 2.1862 -1.9923 5.5566 13 6 1.7222 -1.3412 4.4291 14 9 0.3982 -1.3080 4.1627 15 6 2.0401 -0.7212 -1.2492 16 1 3.1264 -0.7987 -1.2065 17 6 1.6321 0.0666 -2.4962 18 6 2.1698 -0.6366 -3.7446 19 6 1.5609 -2.0392 -3.8380 20 7 1.8249 -2.7540 -2.5819 21 6 2.4275 -3.9836 -2.5922 22 1 3.0181 -4.3027 -1.7460 23 6 2.2794 -4.8199 -3.6901 24 7 1.3173 -4.5989 -4.5607 25 14 3.4455 -6.2591 -3.9321 26 1 4.4313 -6.2895 -2.8219 27 1 2.6721 -7.5267 -3.9414 28 1 4.1599 -6.1054 -5.2248 29 6 1.4296 -2.1247 -1.3143 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 2.2491 -1.6318 1.1526 34 1 5.4999 -1.4462 5.2033 35 1 3.8971 -2.5391 6.7134 36 1 1.4886 -2.4752 6.2250 37 1 0.5449 0.1224 -2.5509 38 1 2.0448 1.0739 -2.4407 39 1 3.2551 -0.7149 -3.6789 40 1 1.8994 -0.0628 -4.6309 41 1 2.0146 -2.5800 -4.6686 42 1 0.4851 -1.9607 -3.9947 43 1 1.2141 -5.1832 -5.3281 44 1 1.7967 -2.7220 -0.4797 45 1 0.3431 -2.0532 -1.2652 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025606793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:33 Heat of formation + Delta-G solvation = -103.987763 kcal Electronic energy + Delta-G solvation = -29967.067058 eV Core-core repulsion = 25619.986420 eV Total energy + Delta-G solvation = -4347.080638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.21347 -50.18931 -41.35894 -39.87465 -39.13836 -36.76386 -34.76661 -33.15786 -32.31506 -31.74632 -31.45267 -29.51913 -27.24163 -26.05637 -24.72889 -23.94994 -23.90064 -22.39618 -21.57385 -20.27799 -19.47359 -18.88605 -18.50893 -18.45508 -17.56778 -16.93447 -16.84504 -16.79153 -16.49689 -16.35875 -16.10303 -15.69350 -15.63048 -15.50103 -15.16196 -15.03101 -14.73114 -14.12636 -14.00323 -13.89767 -13.75363 -13.36722 -13.11430 -13.08245 -13.00755 -12.92712 -12.81258 -12.74287 -12.28319 -12.10952 -11.95576 -11.74755 -11.56245 -11.42056 -11.15691 -11.06931 -10.53606 -10.27932 -10.21923 -9.89352 -8.66161 -7.87030 -5.32574 -0.34538 -0.13451 1.21088 1.45405 1.47801 1.57617 1.91964 2.26030 2.50549 2.62982 3.25582 3.27738 3.33272 3.54703 3.72426 3.74270 3.86578 3.94256 3.99955 4.11822 4.30561 4.33424 4.42740 4.57700 4.60418 4.61765 4.65530 4.80529 4.82429 4.88906 4.89864 4.97008 5.00805 5.10198 5.11117 5.15073 5.24591 5.31089 5.35550 5.44529 5.56178 5.62711 5.66647 5.78119 6.25016 6.39212 6.89332 7.15118 7.86248 8.38191 9.19118 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012011 B = 0.003365 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.699162 B = 8318.578264 C = 9377.204954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.156 3.844 3 H 0.081 0.919 4 N -0.702 5.702 5 C 0.565 3.435 6 O -0.566 6.566 7 C -0.226 4.226 8 C 0.139 3.861 9 F -0.138 7.138 10 C -0.153 4.153 11 C -0.026 4.026 12 C -0.152 4.152 13 C 0.140 3.860 14 F -0.137 7.137 15 C -0.097 4.097 16 H 0.065 0.935 17 C -0.097 4.097 18 C -0.131 4.131 19 C 0.175 3.825 20 N -0.609 5.609 21 C -0.262 4.262 22 H 0.066 0.934 23 C -0.048 4.048 24 N -0.933 5.933 25 Si 0.964 3.036 26 H -0.266 1.266 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.152 3.848 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.409 0.591 34 H 0.178 0.822 35 H 0.197 0.803 36 H 0.179 0.821 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.051 0.949 42 H -0.003 1.003 43 H 0.249 0.751 44 H 0.049 0.951 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.586 6.276 21.519 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.100 0.900 4 N -0.352 5.352 5 C 0.350 3.650 6 O -0.445 6.445 7 C -0.230 4.230 8 C 0.119 3.881 9 F -0.116 7.116 10 C -0.171 4.171 11 C -0.043 4.043 12 C -0.171 4.171 13 C 0.120 3.880 14 F -0.115 7.115 15 C -0.117 4.117 16 H 0.083 0.917 17 C -0.135 4.135 18 C -0.170 4.170 19 C 0.049 3.951 20 N -0.332 5.332 21 C -0.392 4.392 22 H 0.084 0.916 23 C -0.244 4.244 24 N -0.580 5.580 25 Si 0.792 3.208 26 H -0.190 1.190 27 H -0.219 1.219 28 H -0.218 1.218 29 C 0.026 3.974 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.245 0.755 34 H 0.196 0.804 35 H 0.214 0.786 36 H 0.196 0.804 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.015 0.985 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.320 7.036 21.347 22.888 hybrid contribution 0.181 -1.026 -1.149 1.551 sum 4.501 6.010 20.198 21.548 Atomic orbital electron populations 1.22198 0.94492 1.02574 1.02369 1.20990 0.94739 0.96371 0.82756 0.90043 1.46198 1.65250 1.14617 1.09092 1.18188 0.77050 0.86183 0.83562 1.90771 1.51426 1.16780 1.85525 1.19943 0.94361 1.08928 0.99809 1.17701 0.83898 0.95762 0.90780 1.91543 1.67405 1.81548 1.71128 1.21629 1.04032 0.99010 0.92435 1.21592 0.90250 0.93549 0.98920 1.21631 0.98814 1.00845 0.95787 1.17684 0.76663 0.98204 0.95489 1.91544 1.31581 1.94533 1.93877 1.21732 1.00149 0.96320 0.93515 0.91689 1.21414 1.01002 0.98129 0.92951 1.22015 0.99899 0.97057 0.98035 1.20615 0.95299 0.90156 0.89005 1.44278 1.69999 1.17448 1.01453 1.19528 1.22994 0.92943 1.03768 0.91606 1.25756 0.98820 1.00298 0.99515 1.70194 1.31846 1.40646 1.15268 0.85265 0.78813 0.79067 0.77655 1.19042 1.21917 1.21813 1.21093 0.96230 0.91776 0.88291 0.92031 0.93280 0.90049 0.75496 0.80423 0.78550 0.80363 0.91592 0.90730 0.93317 0.91067 0.93066 0.98469 0.94167 0.93281 0.95766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.58 8.76 71.98 0.63 -3.95 16 2 C 0.16 4.70 2.35 44.99 0.11 4.81 16 3 H 0.08 2.57 7.58 -2.39 -0.02 2.55 16 4 N -0.70 -20.84 5.01 -445.69 -2.23 -23.08 16 5 C 0.56 17.92 6.50 86.70 0.56 18.48 16 6 O -0.57 -21.72 16.77 -4.00 -0.07 -21.78 16 7 C -0.23 -5.71 5.64 -20.02 -0.11 -5.83 16 8 C 0.14 2.97 7.29 22.67 0.17 3.13 16 9 F -0.14 -3.55 16.83 44.97 0.76 -2.79 16 10 C -0.15 -1.79 10.01 22.28 0.22 -1.57 16 11 C -0.03 -0.18 10.03 22.30 0.22 0.04 16 12 C -0.15 -1.76 10.01 22.28 0.22 -1.54 16 13 C 0.14 2.96 7.29 22.67 0.17 3.12 16 14 F -0.14 -3.47 16.83 44.97 0.76 -2.71 16 15 C -0.10 -3.20 2.27 -10.72 -0.02 -3.22 16 16 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 17 C -0.10 -3.08 4.89 30.62 0.15 -2.93 16 18 C -0.13 -4.86 6.08 30.67 0.19 -4.68 16 19 C 0.17 8.40 5.30 86.36 0.46 8.86 16 20 N -0.61 -30.11 2.99 -699.10 -2.09 -32.20 16 21 C -0.26 -14.24 9.58 84.03 0.81 -13.44 16 22 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 23 C -0.05 -2.68 4.92 84.86 0.42 -2.26 16 24 N -0.93 -55.00 11.20 21.65 0.24 -54.76 16 25 Si 0.96 44.47 29.59 68.60 2.03 46.50 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 28 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 29 C 0.15 6.05 5.26 86.36 0.45 6.50 16 30 H 0.06 1.84 6.23 -2.39 -0.01 1.83 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 2.15 6.59 -2.39 -0.02 2.14 16 33 H 0.41 11.37 7.26 -92.71 -0.67 10.70 16 34 H 0.18 1.05 8.06 -2.91 -0.02 1.02 16 35 H 0.20 -0.41 8.06 -2.91 -0.02 -0.43 16 36 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 37 H 0.07 2.04 6.63 -2.39 -0.02 2.03 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.05 2.80 6.06 -2.39 -0.01 2.79 16 42 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 43 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 44 H 0.05 1.89 6.75 -2.39 -0.02 1.88 16 45 H 0.02 0.99 6.06 -2.39 -0.01 0.98 16 Total: -1.00 -73.05 369.09 4.39 -68.66 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.36 Total: 16.62 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 4.63 Total: 5.53 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -4.08 Total: -110.04 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.07 Total: -21.78 kcal Atomic # 9 Polarization: -7.01 SS G_CDS: 1.51 Total: -5.50 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -73.05 4.39 -68.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025606793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.327 kcal (2) G-P(sol) polarization free energy of solvation -73.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds